Nphp1 (nephronophthisis 1 (juvenile) homolog (human)) - Rat Genome Database

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Gene: Nphp1 (nephronophthisis 1 (juvenile) homolog (human)) Mus musculus
Analyze
Symbol: Nphp1
Name: nephronophthisis 1 (juvenile) homolog (human)
RGD ID: 1317735
MGI Page MGI
Description: Involved in several processes, including photoreceptor cell outer segment organization; retina development in camera-type eye; and spermatid differentiation. Located in ciliary base; cytoplasm; and photoreceptor distal connecting cilium. Is expressed in several structures, including central nervous system; genitourinary system; gut; respiratory system; and white fat. Human ortholog(s) of this gene implicated in Bardet-Biedl syndrome; Joubert syndrome 4; Senior-Loken syndrome; nephronophthisis; and nephronophthisis 1. Orthologous to human NPHP1 (nephrocystin 1).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: nephrocystin 1; nephrocystin-1
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392127,582,652 - 127,630,833 (-)NCBIGRCm39mm39
GRCm39 Ensembl2127,582,652 - 127,630,817 (-)Ensembl
GRCm382127,740,732 - 127,788,913 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2127,740,732 - 127,788,897 (-)EnsemblGRCm38mm10GRCm38
MGSCv372127,566,468 - 127,614,590 (-)NCBIGRCm37mm9NCBIm37
MGSCv362127,432,171 - 127,480,295 (-)NCBImm8
Celera2128,973,360 - 129,021,982 (-)NCBICelera
Cytogenetic Map2F1NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

Additional References at PubMed
PMID:10349636   PMID:10665934   PMID:10739664   PMID:11042159   PMID:11076861   PMID:11493697   PMID:12477932   PMID:12652657   PMID:12872123   PMID:14610273   PMID:15817158   PMID:16141072  
PMID:16141073   PMID:16308564   PMID:16885411   PMID:17251353   PMID:17971504   PMID:18287559   PMID:18684731   PMID:18799693   PMID:19208653   PMID:19334288   PMID:20081859   PMID:20169535  
PMID:20172860   PMID:20233749   PMID:20856870   PMID:21267068   PMID:21565611   PMID:21873635   PMID:24194600   PMID:24302887   PMID:25671767   PMID:26540106   PMID:26936822   PMID:27626380  
PMID:27956704   PMID:29725084   PMID:29899041   PMID:32290105   PMID:33961633   PMID:34415307  


Genomics

Comparative Map Data
Nphp1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392127,582,652 - 127,630,833 (-)NCBIGRCm39mm39
GRCm39 Ensembl2127,582,652 - 127,630,817 (-)Ensembl
GRCm382127,740,732 - 127,788,913 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2127,740,732 - 127,788,897 (-)EnsemblGRCm38mm10GRCm38
MGSCv372127,566,468 - 127,614,590 (-)NCBIGRCm37mm9NCBIm37
MGSCv362127,432,171 - 127,480,295 (-)NCBImm8
Celera2128,973,360 - 129,021,982 (-)NCBICelera
Cytogenetic Map2F1NCBI
NPHP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382110,123,348 - 110,205,013 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl2110,122,311 - 110,205,066 (-)EnsemblGRCh38hg38GRCh38
GRCh372110,880,925 - 110,962,590 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362110,237,177 - 110,319,883 (-)NCBINCBI36hg18NCBI36
Build 342110,292,999 - 110,319,969NCBI
Celera2104,844,788 - 104,926,515 (+)NCBI
Cytogenetic Map2q13NCBI
HuRef2104,021,273 - 104,102,972 (-)NCBIHuRef
CHM1_12110,885,220 - 110,966,946 (-)NCBICHM1_1
T2T-CHM13v2.02110,588,729 - 110,670,393 (+)NCBI
Nphp1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.23114,960,650 - 115,016,234 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl3114,960,650 - 115,016,234 (-)Ensembl
Rnor_6.03120,316,048 - 120,370,089 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3120,316,047 - 120,373,500 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03126,960,471 - 127,017,986 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43115,263,821 - 115,322,901 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.13115,169,392 - 115,225,028 (-)NCBI
Celera3113,795,120 - 113,850,690 (-)NCBICelera
Cytogenetic Map3q36NCBI
Nphp1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554703,260,557 - 3,307,797 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554703,261,455 - 3,305,989 (+)NCBIChiLan1.0ChiLan1.0
NPHP1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.12A111,625,267 - 111,706,205 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A111,625,267 - 111,706,205 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v02A91,520,612 - 91,602,187 (+)NCBIMhudiblu_PPA_v0panPan3
NPHP1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11735,076,527 - 35,136,674 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1735,076,636 - 35,136,425 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1734,845,437 - 34,905,231 (-)NCBI
ROS_Cfam_1.01735,847,583 - 35,907,539 (-)NCBI
ROS_Cfam_1.0 Ensembl1735,847,691 - 35,907,474 (-)Ensembl
UMICH_Zoey_3.11734,975,730 - 35,035,512 (-)NCBI
UNSW_CanFamBas_1.01735,044,554 - 35,103,753 (-)NCBI
UU_Cfam_GSD_1.01735,253,888 - 35,313,793 (-)NCBI
NPHP1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl346,281,570 - 46,377,273 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1346,316,864 - 46,378,279 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2347,952,796 - 48,013,146 (-)NCBISscrofa10.2Sscrofa10.2susScr3
NPHP1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11413,520,573 - 13,589,980 (-)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl1413,520,541 - 13,589,146 (-)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660806,101,274 - 6,169,926 (+)NCBIVero_WHO_p1.0
Nphp1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247491,725,598 - 1,779,344 (+)EnsemblHetGla_female_1.0hetGla2
HetGla 1.0NW_0046247491,725,515 - 1,779,787 (+)NCBIHetGla_female_1.0hetGla2


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1302174Dssc2_mdextran sodium sulfate induced colitis QTL2 (mouse)Not determined224224632148700377Mouse
4141854T2dm2sa_mtype 2 diabetes mellitus 2 in SMXA RI mice (mouse)Not determined229307947148374934Mouse
1301344Lith1_mlithogenic gene 1 (mouse)Not determined245347635145312647Mouse
13824983Vclq1_mcurvilinear velocity QTL 1 (mouse)261830344136841920Mouse
5491197Mobq5_mmultigenic obesity QTL 5 (mouse)Not determined265269746162518926Mouse
11528549Sluc31_msusceptibility to lung cancer 31 (mouse)274524117129213005Mouse
4141155Plast2b_mplasma plant sterol 2b (mouse)Not determined284013198148522175Mouse
10412082Hylaq1_mHyperlocomotor activity related QTL 1 (mouse)Not determined284013198148667470Mouse
5491196Mobq6_mmultigenic obesity QTL 6 (mouse)Not determined285724269180896594Mouse
27226761Feml18_mfemur length 18, 16 week (mouse)294230345154241920Mouse
11049569Lmr28d_mleishmaniasis resistance 28d (mouse)297123370131123532Mouse
11049568Lmr28c_mleishmaniasis resistance 28c (mouse)297123370131123532Mouse
12904935Edlmmq2_mextensor digitorum longus muscle mass QTL 2 (mouse)297210364131210364Mouse
12904954Gmmq2_mgastrocnemius muscle mass QTL 2 (mouse)297210364131210364Mouse
4141802Ignpq1_mIgA nephropathy QTL 1 (mouse)Not determined2100824060134824269Mouse
1302203Gvhd3_mgraft-versus host disease 3 (mouse)Not determined2100942930134943090Mouse
1301330Tbbmd2_mtotal body bone mineral density 2 (mouse)Not determined2100942930134943090Mouse
1302071Fembrs1_mfemur breaking strength 1 (mouse)Not determined2100942930134943090Mouse
27226788Feml13_mfemur length 13, 10 week (mouse)2102630345159941920Mouse
11041906Lmr28a_mleishmaniasis resistance 28a (mouse)2103095716129213005Mouse
11038702Ltpr2_mLeishmania tropica response 2 (mouse)2103095716167212356Mouse
1301825Pbrgcsf1_mperipheral blood stem cell response to granulocyte colony stimulating factor 1 (mouse)Not determined2106233580140233729Mouse
10043875Bw25_mbody weight QTL 25 (mouse)Not determined2107255676141255676Mouse
1301087Bbaa15_mB.burgdorferi-associated arthritis 15 (mouse)Not determined2110489658144489807Mouse
10045885Cplaq15_mcircadian period of locomotor activity 15 (mouse)Not determined2110916118154354667Mouse
1558990Skmw9_mskeletal muscle weight 9 (mouse)Not determined2111173704145173821Mouse
1300793Pcfm2_mperiosteal circumference and femur length 2 (mouse)Not determined2111173704145173821Mouse
1301905Lgth2_mbody length 2 (mouse)Not determined2111173704145173821Mouse
1301755Hrq1_mheart rate quantitative locus 1 (mouse)Not determined2111173704145173821Mouse
1301201Chab1_mcholesterol absorption 1 (mouse)Not determined2111551028145551163Mouse
1302033Nsv1_mNeuroadapted Sindbis viral RNA level 1 (mouse)Not determined2111623386145623526Mouse
1300798Actre3_mactivity response to ethanol 3 (mouse)Not determined2112024987128173821Mouse
1301415Actre4_mactivity response to ethanol 4 (mouse)Not determined2112024987128173821Mouse
11039520Ltpr2h_mLeishmania tropica response 2h (mouse)2112212746146213005Mouse
11038699Ltpr2b_mLeishmania tropica response 2b (mouse)2112212746146213005Mouse
11038700Ltpr2a_mLeishmania tropica response 2a (mouse)2112212746146213005Mouse
1301029T2dm3_mtype 2 diabetes mellitus 3 (mouse)Not determined2114288075132714157Mouse
11039521Ltpr2g_mLeishmania tropica response 2g (mouse)2115212857149212994Mouse
11038696Ltpr2f_mLeishmania tropica response 2f (mouse)2115212857149212994Mouse
1301295Prdt1_mprion disease incubation time 1 (mouse)Not determined2116077623150077741Mouse
1558881Ses7_msalmonella enteritidis susceptibility 7 (mouse)Not determined2116306330150306474Mouse
1301618Bglu1_mblood glucose level 1 (mouse)Not determined2117942930174324863Mouse
12910795Pwbwq5_mpost-weaning body weight QTL 5 (mouse)2118589253160611165Mouse
12910799Pwgrq2_mpre-weaning growth rate QTL 2 (mouse)2118589253160611165Mouse
12910812Pwgrq1_mpre-weaning growth rate QTL 1 (mouse)2118589253160611165Mouse
12910814Pwbwq1_mpre-weaning body weight QTL 1 (mouse)2118589253160611165Mouse
1300712El2_mepilepsy 2 (mouse)Not determined2122207146142532135Mouse
1301294Hrtfm5_mheart failure modifier 5 (mouse)Not determined2122883015156883131Mouse
1301066Otx2m2_morthodenticle homolog 2 (Drosophila) modifier 2 (mouse)Not determined2123231973148700377Mouse
1301822Pgia2_mproteoglycan induced arthritis 2 (mouse)Not determined2123937311157937424Mouse
27226749Femd10_mfemur midshaft diameter 10, 16 week (mouse)2124441920168241920Mouse
13506763Tbvq1_mtrabecular bone volume QTL 1 (mouse)2126041920135441920Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:245
Count of miRNA genes:142
Interacting mature miRNAs:152
Transcripts:ENSMUST00000028857, ENSMUST00000110357, ENSMUST00000144938, ENSMUST00000148033
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001291012 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001291013 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001355429 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001369236 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_016902 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011239695 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011239696 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011239697 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030251881 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036162392 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AA107655 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF127180 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF176210 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ243223 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK009252 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK159627 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL844204 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC118953 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY147655 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY353783 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466519 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  EF174553 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  EF174554 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FJ767895 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FJ767896 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FJ767897 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FJ767898 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000028857   ⟹   ENSMUSP00000028857
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2127,582,652 - 127,630,774 (-)Ensembl
GRCm38.p6 Ensembl2127,740,732 - 127,788,854 (-)Ensembl
RefSeq Acc Id: ENSMUST00000110357   ⟹   ENSMUSP00000105986
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2127,582,656 - 127,630,817 (-)Ensembl
GRCm38.p6 Ensembl2127,740,736 - 127,788,897 (-)Ensembl
RefSeq Acc Id: ENSMUST00000144938
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2127,582,654 - 127,586,467 (-)Ensembl
GRCm38.p6 Ensembl2127,740,734 - 127,744,547 (-)Ensembl
RefSeq Acc Id: ENSMUST00000148033
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2127,587,542 - 127,595,990 (-)Ensembl
GRCm38.p6 Ensembl2127,745,622 - 127,754,070 (-)Ensembl
RefSeq Acc Id: NM_001291012   ⟹   NP_001277941
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392127,582,652 - 127,630,811 (-)NCBI
GRCm382127,740,732 - 127,788,891 (-)NCBI
Celera2128,973,360 - 129,022,019 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001291013   ⟹   NP_001277942
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392127,582,652 - 127,630,811 (-)NCBI
GRCm382127,740,732 - 127,788,891 (-)NCBI
Celera2128,973,360 - 129,022,019 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001355429   ⟹   NP_001342358
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392127,582,652 - 127,630,811 (-)NCBI
GRCm382127,740,732 - 127,788,891 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001369236   ⟹   NP_001356165
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392127,582,652 - 127,630,811 (-)NCBI
GRCm382127,740,732 - 127,788,891 (-)NCBI
Sequence:
RefSeq Acc Id: NM_016902   ⟹   NP_058598
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392127,582,652 - 127,630,811 (-)NCBI
GRCm382127,740,732 - 127,788,891 (-)NCBI
MGSCv372127,566,468 - 127,614,590 (-)RGD
Celera2128,973,360 - 129,022,019 (-)NCBI
cM Map2 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_011239695   ⟹   XP_011237997
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392127,582,654 - 127,630,833 (-)NCBI
GRCm382127,740,734 - 127,788,913 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011239696   ⟹   XP_011237998
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392127,582,654 - 127,630,833 (-)NCBI
GRCm382127,740,734 - 127,788,913 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011239697   ⟹   XP_011237999
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392127,582,654 - 127,630,833 (-)NCBI
GRCm382127,740,734 - 127,788,913 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030251881   ⟹   XP_030107741
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392127,582,654 - 127,630,833 (-)NCBI
GRCm382127,740,734 - 127,788,913 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036162392   ⟹   XP_036018285
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392127,582,654 - 127,630,833 (-)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: NP_058598   ⟸   NM_016902
- Peptide Label: isoform a
- UniProtKB: Q9QY53 (UniProtKB/Swiss-Prot),   A2APS1 (UniProtKB/TrEMBL),   Q3TWM5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001277942   ⟸   NM_001291013
- Peptide Label: isoform c
- Sequence:
RefSeq Acc Id: NP_001277941   ⟸   NM_001291012
- Peptide Label: isoform b
- UniProtKB: Q3TWM5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011237999   ⟸   XM_011239697
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_011237998   ⟸   XM_011239696
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_011237997   ⟸   XM_011239695
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: NP_001342358   ⟸   NM_001355429
- Peptide Label: isoform d
RefSeq Acc Id: NP_001356165   ⟸   NM_001369236
- Peptide Label: isoform e
RefSeq Acc Id: XP_030107741   ⟸   XM_030251881
- Peptide Label: isoform X5
RefSeq Acc Id: ENSMUSP00000105986   ⟸   ENSMUST00000110357
RefSeq Acc Id: ENSMUSP00000028857   ⟸   ENSMUST00000028857
RefSeq Acc Id: XP_036018285   ⟸   XM_036162392
- Peptide Label: isoform X2
Protein Domains
SH3

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9QY53-F1-model_v2 AlphaFold Q9QY53 1-687 view protein structure

Promoters
RGD ID:6831941
Promoter ID:MM_KWN:31622
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day1,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   ES_Cell,   Kidney,   MEF_B4,   MEF_B6
Transcripts:ENSMUST00000028857,   ENSMUST00000110358,   UC008MGB.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv362127,614,521 - 127,615,021 (-)MPROMDB
RGD ID:6878666
Promoter ID:EPDNEW_M2784
Type:single initiation site
Name:Nphp1_2
Description:Mus musculus nephronophthisis 1 homolog , transcript variant3, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M2785  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm382127,744,546 - 127,744,606EPDNEW
RGD ID:6878668
Promoter ID:EPDNEW_M2785
Type:initiation region
Name:Nphp1_1
Description:Mus musculus nephronophthisis 1 homolog , transcript variant3, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M2784  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm382127,788,891 - 127,788,951EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1858233 AgrOrtholog
Ensembl Genes ENSMUSG00000027378 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000028857 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUSP00000105986 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000028857 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUST00000110357 ENTREZGENE, UniProtKB/TrEMBL
InterPro NPHP1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  NPHP1_SH3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SH3-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SH3_domain UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:53885 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:1858233 ENTREZGENE
NCBI Gene 53885 ENTREZGENE
PANTHER PTHR15176:SF1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam SH3_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Nphp1 PhenoGen
PRINTS SH3DOMAIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE SH3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART SH3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF50044 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A1Z2X7_MOUSE UniProtKB/TrEMBL
  A1Z2X8_MOUSE UniProtKB/TrEMBL
  A2APS1 ENTREZGENE, UniProtKB/TrEMBL
  C0LT62_MOUSE UniProtKB/TrEMBL
  C0LT63_MOUSE UniProtKB/TrEMBL
  C0LT64_MOUSE UniProtKB/TrEMBL
  NPHP1_MOUSE UniProtKB/Swiss-Prot
  Q0VF70_MOUSE UniProtKB/TrEMBL
  Q3TWM5 ENTREZGENE, UniProtKB/TrEMBL
  Q9QY53 ENTREZGENE
UniProt Secondary Q9D7G8 UniProtKB/Swiss-Prot
  Q9QZP0 UniProtKB/Swiss-Prot
  Q9WUZ2 UniProtKB/Swiss-Prot