0610010K14Rik (RIKEN cDNA 0610010K14 gene) - Rat Genome Database

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Gene: 0610010K14Rik (RIKEN cDNA 0610010K14 gene) Mus musculus
Analyze
Symbol: 0610010K14Rik
Name: RIKEN cDNA 0610010K14 gene
RGD ID: 1317731
MGI Page MGI
Description: Predicted to enable identical protein binding activity. Predicted to act upstream of or within chromatin organization. Predicted to be located in cytosol and nucleoplasm. Predicted to be part of MLL1 complex and NURF complex. Is expressed in several structures, including alimentary system; eye; genitourinary system; leg; and nervous system. Orthologous to human C17orf49 (chromosome 17 open reading frame 49).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 1110020A23Rik; AL033328; AU045833; Bap18; BPTF-associated protein of 18 kDa; chromatin complexes subunit BAP18; MLL1/MLL complex subunit C17orf49 homolog; RP23-198E14.7
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391170,126,030 - 70,128,808 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1170,126,032 - 70,128,740 (-)EnsemblGRCm39 Ensembl
GRCm381170,235,204 - 70,237,923 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1170,235,206 - 70,237,914 (-)EnsemblGRCm38mm10GRCm38
MGSCv371170,048,706 - 70,051,416 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361170,051,403 - 70,054,109 (-)NCBIMGSCv36mm8
Celera1177,779,678 - 77,782,388 (-)NCBICelera
Cytogenetic Map11B3NCBI
cM Map1142.99NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytosol  (ISO)
MLL1 complex  (IBA,ISO)
nucleoplasm  (ISO)
nucleus  (IEA)
NURF complex  (IBA,ISO)

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2. Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Ko MS, etal., Development 2000 Apr;127(8):1737-49.
3. MGDs mouse GO annotations MGD data from the GO Consortium
4. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
5. Mouse MP Annotation Import Pipeline RGD automated import pipeline
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:7671812   PMID:8889548   PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:12477932   PMID:14610273   PMID:15226823   PMID:15489334   PMID:15782199   PMID:16141072  
PMID:16141073   PMID:18287559   PMID:19334288   PMID:20362541   PMID:21267068   PMID:21873635   PMID:23892456   PMID:24194600   PMID:30457570  


Genomics

Comparative Map Data
0610010K14Rik
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391170,126,030 - 70,128,808 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1170,126,032 - 70,128,740 (-)EnsemblGRCm39 Ensembl
GRCm381170,235,204 - 70,237,923 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1170,235,206 - 70,237,914 (-)EnsemblGRCm38mm10GRCm38
MGSCv371170,048,706 - 70,051,416 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361170,051,403 - 70,054,109 (-)NCBIMGSCv36mm8
Celera1177,779,678 - 77,782,388 (-)NCBICelera
Cytogenetic Map11B3NCBI
cM Map1142.99NCBI
C17orf49
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38177,014,782 - 7,017,520 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl177,014,495 - 7,017,525 (+)EnsemblGRCh38hg38GRCh38
GRCh37176,918,101 - 6,920,839 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36176,858,848 - 6,861,563 (+)NCBINCBI36Build 36hg18NCBI36
Celera176,943,578 - 6,946,344 (+)NCBICelera
Cytogenetic Map17p13.1NCBI
HuRef176,811,749 - 6,814,536 (+)NCBIHuRef
CHM1_1176,927,486 - 6,930,273 (+)NCBICHM1_1
T2T-CHM13v2.0176,915,382 - 6,918,120 (+)NCBIT2T-CHM13v2.0
C10h17orf49
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81055,450,648 - 55,453,409 (-)NCBIGRCr8
mRatBN7.21054,951,991 - 54,954,756 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1054,951,991 - 54,956,601 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1059,631,535 - 59,634,197 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01059,120,134 - 59,122,796 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01054,619,258 - 54,621,920 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01056,843,846 - 56,848,265 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1056,845,383 - 56,849,255 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01056,589,618 - 56,592,444 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41057,074,325 - 57,076,971 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11057,087,976 - 57,090,651 (-)NCBI
Celera1054,103,460 - 54,106,106 (-)NCBICelera
Cytogenetic Map10q24NCBI
LOC102008931
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554679,911,660 - 9,916,106 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554679,911,925 - 9,914,811 (-)NCBIChiLan1.0ChiLan1.0
C19H17orf49
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21914,608,275 - 14,611,139 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11716,574,283 - 16,577,124 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0177,045,486 - 7,048,370 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1177,033,360 - 7,036,634 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl177,033,360 - 7,036,634 (+)Ensemblpanpan1.1panPan2
C5H17orf49
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1532,042,545 - 32,045,347 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl532,042,540 - 32,045,364 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha532,181,213 - 32,184,064 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0532,147,468 - 32,150,319 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl532,147,521 - 32,150,336 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1532,113,536 - 32,116,387 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0532,072,780 - 32,075,631 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0532,249,259 - 32,252,110 (+)NCBIUU_Cfam_GSD_1.0
CUNH17orf49
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560246,812,164 - 46,814,956 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936595285,234 - 289,144 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936595286,250 - 289,144 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
C12H17orf49
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1252,418,984 - 52,421,935 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11252,418,989 - 52,421,938 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21254,717,494 - 54,720,458 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CUNH17orf49
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1166,373,906 - 6,376,811 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl166,374,142 - 6,376,611 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605915,038,145 - 15,041,172 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
CUNH17orf49
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247869,557,766 - 9,562,800 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247869,559,130 - 9,561,847 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:2502
Count of miRNA genes:419
Interacting mature miRNAs:496
Transcripts:ENSMUST00000021180, ENSMUST00000021181, ENSMUST00000100950, ENSMUST00000102569, ENSMUST00000108575, ENSMUST00000108576, ENSMUST00000108577, ENSMUST00000108578, ENSMUST00000108579, ENSMUST00000134700, ENSMUST00000135390, ENSMUST00000138658, ENSMUST00000148878, ENSMUST00000150504
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
26884453Sklq16_mskull length QTL 16, 16 week (mouse)11325000072690826Mouse
13208559Wght10_mweight 10 (mouse)11395000088890826Mouse
13208558Lgth12_mbody length 12 (mouse)11395000094890826Mouse
1300905Scc6_mcolon tumor susceptibility 6 (mouse)Not determined11688027789019734Mouse
39128214Lwq20_mliver weight QTL 20 (mouse)1112268637118022724Mouse
4141894Nidd6k_mNidd6 on KK-A (mouse)Not determined1912420496897826Mouse
10412246Dfs2_mdental fluorosis suseptibility 2 (mouse)Not determined112180736495881231Mouse
13208569Bmiq10_mbody mass index QTL 10 (mouse)113589082784890826Mouse
1301328Mol4_mmodifier of LPS-response 4 (mouse)Not determined113628257783481356Mouse
1301788Lbw8_mlupus NZB x NZW 8 (mouse)Not determined113650328770509492Mouse
1301896Tria1_mT-cell receptor induced activation 1 (mouse)Not determined113661356570613855Mouse
4141853Skmw17_mskeletal muscle weight 17 (mouse)Not determined113708094171081064Mouse
10766457Nwa3_mNew Zealand White autoimmunity 3 (mouse)113801611572016209Mouse
11532698Sluc36a_msusceptibility to lung cancer 36a (mouse)114225661776256730Mouse
11532699Sluc36b_msusceptibility to lung cancer 36b (mouse)114225661776256730Mouse
4142300Ctrq3_mC. trachomatis resistance QTL 3 (mouse)Not determined114463003876854757Mouse
4141367Inf1_macute ozone induced inflammation (mouse)Not determined44630038113058009Mouse
1302021Nidd1n_mnon-insulin-dependent diabetes mellitus 1 in NSY (mouse)Not determined114516587379978324Mouse
1357878Mastr_mmodifier of astrocytoma (mouse)Not determined114570858189818733Mouse
1300765Bbaa4_mB.burgdorferi-associated arthritis 4 (mouse)Not determined114618516780185262Mouse
1301988Bmd11_mbone mineral density 11 (mouse)Not determined114631940780319522Mouse
1301830Ssta4_msusceptibility to Salmonella typhimurium antigens 4 (mouse)Not determined115007819184078411Mouse
13524840Ppiq9a_mprepulse inhibition QTL 9a (mouse)115249438586494385Mouse
1300774Pgia7_mproteoglycan induced arthritis 7 (mouse)Not determined115339058887390737Mouse
4141830Pregq1_mpregnancy QTL 1 (mouse)Not determined115412675283733652Mouse
4141875Etax9_methanol induced ataxia 9 (mouse)Not determined5528498572209927Mouse
4142121Tmc1m2_mTmc1 modifier 2 (mouse)Not determined1156864027114157957Mouse
1300664Etohcta9_methanol conditioned taste aversion 9 (mouse)Not determined115775466091754758Mouse
10053682Eae45_mexperimental allergic encephalomyelitis susceptibility 45 (mouse)Not determined115849055574754758Mouse
1300924Ity2_mimmunity to S. typhimurium 2 (mouse)Not determined15850803087695238Mouse
4141982Skts-fp2_mskin tumor susceptibility in FVB and PWK 2 (mouse)Not determined5871926685066529Mouse
1301987Pid3_mprior incubation determinant 3 (mouse)Not determined116168682088699728Mouse
1301319Dautb4_mdopamine uptake transporter binding 4 (mouse)Not determined116215600596156153Mouse
27226730Tibmd1_mtibia midshaft diameter 1, 5 week (mouse)1162590826109390826Mouse
1301999Lmr15_mleishmaniasis resistance 15 (mouse)Not determined116331940781830473Mouse
10044004Stzid3_mstreptozotocin induced diabetes susceptibility 3 (mouse)Not determined116331940794063918Mouse
11039502Ltpr6b_mLeishmania tropica response 6b (mouse)116483033698830473Mouse
11039501Ltpr6a_mLeishmania tropica response 6a (mouse)116483033698830473Mouse
11039515Ltpr6_mLeishmania tropica response 6 (mouse)116483033698830473Mouse
1357766Si5lq6_mserum IGFBP-5 level QTL 6 (mouse)Not determined1166733420100733652Mouse
1301546Pcir2_mperiosteal circumference 2 (mouse)Not determined1166733420100733652Mouse
1301833Tbbmd5_mtotal body bone mineral density 5 (mouse)Not determined1166733420100733652Mouse
1300628Lgth6_mbody length 6 (mouse)Not determined1166733420100733652Mouse
4141012Femwf6_mfemur work to failure 6 (mouse)Not determined66733420100733652Mouse
1300784Prdt3_mprion disease incubation time 3 (mouse)Not determined1166733420100733652Mouse
4142316Ity2b_mimmunity to S. typhimurium 2b (mouse)Not determined116707819179813912Mouse
27226783Tibl5_mtibia length 5, 5 week (mouse)1168190826101890826Mouse
36049778Ars6_mantibody response to SARS-CoV 6, day 15, IgM (mouse)116899082672490826Mouse
36049779Ars7_mantibody response to SARS-CoV 7, day 29, IgG1 (mouse)116899082672490826Mouse
36049784Ars8_mantibody response to SARS-CoV 8, day 29, IgG2a+IgG2c (mouse)116899082672490826Mouse
36049785Ars9_mantibody response to SARS-CoV 9, day 29, IgM (mouse)116899082672490826Mouse
36049786Ars10_mantibody response to SARS-CoV 10, 4 days post-rechallenge, IgG2a+IgG2c (mouse)116899082672490826Mouse
36049787Ars11_mantibody response to SARS-CoV 11, 4 days post-rechallenge, IgM (mouse)116899082672490826Mouse
36049788Ars1_mantibody response to SARS-CoV 1, day 7, IgG1 (mouse)116899082672490826Mouse
36049789Ars2_mantibody response to SARS-CoV 2, day 7, IgG2a+IgG2c (mouse)116899082672490826Mouse
36049790Ars3_mantibody response to SARS-CoV 3, day 7, IgG2b (mouse)116899082672490826Mouse
36049791Ars4_mantibody response to SARS-CoV 4, day 7, IgG3 (mouse)116899082672490826Mouse
36049792Ars5_mantibody response to SARS-CoV 5, day 7, IgM (mouse)116899082672490826Mouse
35673314Ari2_mantibody response to influenza 2, day 10, IgG3 (mouse)116899082672490826Mouse

Markers in Region
AU045833  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381170,235,276 - 70,235,733UniSTSGRCm38
MGSCv371170,048,778 - 70,049,235UniSTSGRCm37
Celera1177,779,750 - 77,780,207UniSTS
Cytogenetic Map11B3UniSTS
Whitehead/MRC_RH11911.36UniSTS
RH124212  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381170,235,284 - 70,235,391UniSTSGRCm38
MGSCv371170,048,786 - 70,048,893UniSTSGRCm37
Celera1177,779,758 - 77,779,865UniSTS
Cytogenetic Map11B3UniSTS
MARC_13791-13792:1006807790:1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381170,238,963 - 70,239,696UniSTSGRCm38
MGSCv371170,052,465 - 70,053,198UniSTSGRCm37
Celera1177,783,437 - 77,784,170UniSTS
Cytogenetic Map11B3UniSTS
cM Map1137.0UniSTS
MARC_24292-24293:1030106971:1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381170,238,385 - 70,238,994UniSTSGRCm38
MGSCv371170,051,887 - 70,052,496UniSTSGRCm37
Celera1177,782,859 - 77,783,468UniSTS
Cytogenetic Map11B3UniSTS
cM Map1137.0UniSTS
D11Bwg0434e  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381170,238,130 - 70,238,305UniSTSGRCm38
MGSCv371170,051,632 - 70,051,807UniSTSGRCm37
Celera1177,782,604 - 77,782,779UniSTS
Cytogenetic Map11B3UniSTS
cM Map1137.0UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001177601 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001177603 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001177606 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001177607 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_026757 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_145758 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017314213 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030245456 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_003949207 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_003949208 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AA189586 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK003842 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK169173 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK170380 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK178853 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK208696 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL669869 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AW557771 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC055357 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BE861439 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CB192659 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466596 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CK791552 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CR933731 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  EL959640 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSMUST00000021180   ⟹   ENSMUSP00000021180
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1170,126,562 - 70,128,687 (-)Ensembl
GRCm38.p6 Ensembl1170,235,736 - 70,237,861 (-)Ensembl
RefSeq Acc Id: ENSMUST00000021181   ⟹   ENSMUSP00000021181
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1170,126,032 - 70,128,740 (-)Ensembl
GRCm38.p6 Ensembl1170,235,206 - 70,237,914 (-)Ensembl
RefSeq Acc Id: ENSMUST00000100950   ⟹   ENSMUSP00000098510
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1170,126,188 - 70,128,504 (-)Ensembl
GRCm38.p6 Ensembl1170,235,362 - 70,237,678 (-)Ensembl
RefSeq Acc Id: ENSMUST00000102569   ⟹   ENSMUSP00000099629
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1170,126,032 - 70,128,740 (-)Ensembl
GRCm38.p6 Ensembl1170,235,206 - 70,237,914 (-)Ensembl
RefSeq Acc Id: ENSMUST00000108575   ⟹   ENSMUSP00000104215
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1170,126,032 - 70,128,679 (-)Ensembl
GRCm38.p6 Ensembl1170,235,206 - 70,237,853 (-)Ensembl
RefSeq Acc Id: ENSMUST00000108576   ⟹   ENSMUSP00000104216
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1170,126,230 - 70,128,630 (-)Ensembl
GRCm38.p6 Ensembl1170,235,404 - 70,237,804 (-)Ensembl
RefSeq Acc Id: ENSMUST00000108577   ⟹   ENSMUSP00000104218
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1170,126,034 - 70,128,728 (-)Ensembl
GRCm38.p6 Ensembl1170,235,208 - 70,237,902 (-)Ensembl
RefSeq Acc Id: ENSMUST00000108578   ⟹   ENSMUSP00000104219
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1170,126,032 - 70,128,740 (-)Ensembl
GRCm38.p6 Ensembl1170,235,206 - 70,237,914 (-)Ensembl
RefSeq Acc Id: ENSMUST00000108579   ⟹   ENSMUSP00000104220
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1170,126,032 - 70,128,730 (-)Ensembl
GRCm38.p6 Ensembl1170,235,206 - 70,237,904 (-)Ensembl
RefSeq Acc Id: ENSMUST00000134700   ⟹   ENSMUSP00000119483
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1170,126,032 - 70,127,730 (-)Ensembl
GRCm38.p6 Ensembl1170,235,206 - 70,236,904 (-)Ensembl
RefSeq Acc Id: ENSMUST00000135390   ⟹   ENSMUSP00000134994
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1170,126,032 - 70,127,022 (-)Ensembl
GRCm38.p6 Ensembl1170,235,206 - 70,236,196 (-)Ensembl
RefSeq Acc Id: ENSMUST00000138658
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1170,126,205 - 70,128,589 (-)Ensembl
GRCm38.p6 Ensembl1170,235,379 - 70,237,763 (-)Ensembl
RefSeq Acc Id: ENSMUST00000148878
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1170,126,197 - 70,128,315 (-)Ensembl
GRCm38.p6 Ensembl1170,235,371 - 70,237,489 (-)Ensembl
RefSeq Acc Id: ENSMUST00000150504
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1170,127,280 - 70,128,738 (-)Ensembl
GRCm38.p6 Ensembl1170,236,454 - 70,237,912 (-)Ensembl
RefSeq Acc Id: NM_001177601   ⟹   NP_001171072
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391170,126,030 - 70,128,740 (-)NCBI
GRCm381170,235,204 - 70,237,914 (-)ENTREZGENE
MGSCv371170,048,706 - 70,051,416 (-)RGD
Celera1177,779,678 - 77,782,388 (-)RGD
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001177603   ⟹   NP_001171074
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391170,126,030 - 70,128,740 (-)NCBI
GRCm381170,235,204 - 70,237,914 (-)ENTREZGENE
MGSCv371170,048,706 - 70,051,416 (-)RGD
Celera1177,779,678 - 77,782,388 (-)RGD
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001177606   ⟹   NP_001171077
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391170,126,030 - 70,128,740 (-)NCBI
GRCm381170,235,204 - 70,237,914 (-)ENTREZGENE
MGSCv371170,048,706 - 70,051,416 (-)RGD
Celera1177,779,678 - 77,782,388 (-)RGD
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001177607   ⟹   NP_001171078
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391170,126,030 - 70,128,740 (-)NCBI
GRCm381170,235,204 - 70,237,914 (-)ENTREZGENE
MGSCv371170,048,706 - 70,051,416 (-)RGD
Celera1177,779,678 - 77,782,388 (-)RGD
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_026757   ⟹   NP_081033
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391170,126,030 - 70,128,740 (-)NCBI
GRCm381170,235,204 - 70,237,914 (-)ENTREZGENE
MGSCv371170,048,706 - 70,051,416 (-)RGD
Celera1177,779,678 - 77,782,388 (-)RGD
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_145758   ⟹   NP_665701
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391170,126,030 - 70,128,740 (-)NCBI
GRCm381170,235,204 - 70,237,914 (-)ENTREZGENE
MGSCv371170,048,706 - 70,051,416 (-)RGD
Celera1177,779,678 - 77,782,388 (-)RGD
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_017314213   ⟹   XP_017169702
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391170,126,032 - 70,128,738 (-)NCBI
GRCm381170,235,206 - 70,237,923 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030245456   ⟹   XP_030101316
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391170,126,032 - 70,128,808 (-)NCBI
GRCm381170,235,206 - 70,237,912 (-)NCBI
Sequence:
RefSeq Acc Id: XR_003949207
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391170,126,032 - 70,128,808 (-)NCBI
GRCm381170,235,206 - 70,237,912 (-)NCBI
Sequence:
RefSeq Acc Id: XR_003949208
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391170,126,032 - 70,128,808 (-)NCBI
GRCm381170,235,206 - 70,237,912 (-)NCBI
Sequence:
RefSeq Acc Id: NP_081033   ⟸   NM_026757
- Peptide Label: isoform 4
- UniProtKB: Q9DCT6 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001171072   ⟸   NM_001177601
- Peptide Label: isoform 1
- UniProtKB: D3Z687 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001171074   ⟸   NM_001177603
- Peptide Label: isoform 3
- UniProtKB: F6XN97 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001171077   ⟸   NM_001177606
- Peptide Label: isoform 5
- UniProtKB: A2CF80 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001171078   ⟸   NM_001177607
- Peptide Label: isoform 6
- UniProtKB: A2CF83 (UniProtKB/TrEMBL),   A2CF80 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_665701   ⟸   NM_145758
- Peptide Label: isoform 2
- UniProtKB: Q7TMP3 (UniProtKB/Swiss-Prot),   Q3TFE6 (UniProtKB/Swiss-Prot),   Q9D183 (UniProtKB/Swiss-Prot),   Q9DCT6 (UniProtKB/Swiss-Prot),   F6XN97 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017169702   ⟸   XM_017314213
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_030101316   ⟸   XM_030245456
- Peptide Label: isoform X2
- UniProtKB: A2CF83 (UniProtKB/TrEMBL),   A2CF80 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSMUSP00000104215   ⟸   ENSMUST00000108575
RefSeq Acc Id: ENSMUSP00000104218   ⟸   ENSMUST00000108577
RefSeq Acc Id: ENSMUSP00000104216   ⟸   ENSMUST00000108576
RefSeq Acc Id: ENSMUSP00000104220   ⟸   ENSMUST00000108579
RefSeq Acc Id: ENSMUSP00000104219   ⟸   ENSMUST00000108578
RefSeq Acc Id: ENSMUSP00000134994   ⟸   ENSMUST00000135390
RefSeq Acc Id: ENSMUSP00000119483   ⟸   ENSMUST00000134700
RefSeq Acc Id: ENSMUSP00000098510   ⟸   ENSMUST00000100950
RefSeq Acc Id: ENSMUSP00000021180   ⟸   ENSMUST00000021180
RefSeq Acc Id: ENSMUSP00000021181   ⟸   ENSMUST00000021181
RefSeq Acc Id: ENSMUSP00000099629   ⟸   ENSMUST00000102569
Protein Domains
SANT

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9DCT6-F1-model_v2 AlphaFold Q9DCT6 1-171 view protein structure

Promoters
RGD ID:6821830
Promoter ID:MM_KWN:8196
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain
Transcripts:OTTMUST00000013593
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361170,049,056 - 70,049,556 (-)MPROMDB
RGD ID:6820138
Promoter ID:MM_KWN:8197
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000021180,   ENSMUST00000100950,   ENSMUST00000108575,   ENSMUST00000108576,   ENSMUST00000108577,   OTTMUST00000013582,   OTTMUST00000013583,   OTTMUST00000013586,   OTTMUST00000013589,   OTTMUST00000013590,   OTTMUST00000013592,   UC007JUD.1,   UC007JUE.1,   UC007JUF.1,   UC007JUG.1,   UC007JUH.1,   UC007JUI.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361170,050,996 - 70,053,712 (-)MPROMDB
RGD ID:8675302
Promoter ID:EPDNEW_M15682
Type:initiation region
Name:0610010K14Rik_1
Description:Mus musculus RIKEN cDNA 0610010K14 gene , transcript variant1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381170,239,809 - 70,239,869EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1915609 AgrOrtholog
Ensembl Genes ENSMUSG00000020831 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000021180.8 UniProtKB/TrEMBL
  ENSMUST00000021181 ENTREZGENE
  ENSMUST00000021181.13 UniProtKB/Swiss-Prot
  ENSMUST00000100950.10 UniProtKB/TrEMBL
  ENSMUST00000102569 ENTREZGENE
  ENSMUST00000102569.10 UniProtKB/Swiss-Prot
  ENSMUST00000108575 ENTREZGENE
  ENSMUST00000108575.9 UniProtKB/TrEMBL
  ENSMUST00000108576 ENTREZGENE
  ENSMUST00000108576.10 UniProtKB/TrEMBL
  ENSMUST00000108577.8 UniProtKB/TrEMBL
  ENSMUST00000108578 ENTREZGENE
  ENSMUST00000108578.9 UniProtKB/Swiss-Prot
  ENSMUST00000108579 ENTREZGENE
  ENSMUST00000108579.8 UniProtKB/Swiss-Prot
  ENSMUST00000134700.8 UniProtKB/TrEMBL
  ENSMUST00000135390.2 UniProtKB/TrEMBL
Gene3D-CATH 1.20.58.1880 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Homeobox-like_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SANT/Myb UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:104457 UniProtKB/Swiss-Prot
MGD MGI:1915609 ENTREZGENE
NCBI Gene 104457 ENTREZGENE
PANTHER CHROMATIN COMPLEXES SUBUNIT BAP18-RELATED UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR21397:SF2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen 0610010K14Rik PhenoGen
Superfamily-SCOP SSF46689 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A2CF80 ENTREZGENE, UniProtKB/TrEMBL
  A2CF83 ENTREZGENE, UniProtKB/TrEMBL
  BAP18_MOUSE UniProtKB/Swiss-Prot
  D3Z687 ENTREZGENE, UniProtKB/TrEMBL
  F6S0D5_MOUSE UniProtKB/TrEMBL
  F6XN97 ENTREZGENE, UniProtKB/TrEMBL
  F8WH46_MOUSE UniProtKB/TrEMBL
  H3BJI0_MOUSE UniProtKB/TrEMBL
  Q3TFE6 ENTREZGENE
  Q7TMP3 ENTREZGENE
  Q9D183 ENTREZGENE
  Q9DCT6 ENTREZGENE
UniProt Secondary Q3TFE6 UniProtKB/Swiss-Prot
  Q7TMP3 UniProtKB/Swiss-Prot
  Q9D183 UniProtKB/Swiss-Prot