Mpp5 (membrane protein, palmitoylated 5 (MAGUK p55 subfamily member 5)) - Rat Genome Database
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Gene: Mpp5 (membrane protein, palmitoylated 5 (MAGUK p55 subfamily member 5)) Mus musculus
Analyze
Symbol: Mpp5
Name: membrane protein, palmitoylated 5 (MAGUK p55 subfamily member 5)
RGD ID: 1317632
MGI Page MGI
Description: Is expressed in several structures, including cerebral cortex; early conceptus; eye; and future spinal cord neural plate. Used to study Leber congenital amaurosis. Orthologous to human MPP5 (membrane palmitoylated protein 5); INTERACTS WITH 1,2-dichloroethane; 1,2-dimethylhydrazine; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: 3830420B02Rik; AI255216; AI644496; MAGUK p55 subfamily member 5; membrane protein, palmitoylated 3 (MAGUK p55 subfamily member 5); P; Pals1; protein associated with Lin-7 1
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391278,795,606 - 78,887,488 (+)NCBIGRCm39mm39
GRCm39 Ensembl1278,795,681 - 78,887,488 (+)Ensembl
GRCm381278,748,882 - 78,840,714 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1278,748,907 - 78,840,714 (+)EnsemblGRCm38mm10GRCm38
MGSCv371279,849,934 - 79,941,701 (+)NCBIGRCm37mm9NCBIm37
MGSCv361279,667,864 - 79,756,927 (+)NCBImm8
Celera1280,213,557 - 80,305,293 (+)NCBICelera
Cytogenetic Map12C3NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
abnormal behavior  (IAGP)
abnormal brain morphology  (IAGP)
abnormal cell proliferation  (IAGP)
abnormal cerebral cortex morphology  (IAGP)
abnormal eye electrophysiology  (IAGP)
abnormal gait  (IAGP)
abnormal neuronal precursor proliferation  (IAGP)
abnormal photoreceptor outer segment morphology  (IAGP)
abnormal placing response  (IAGP)
abnormal retina morphology  (IAGP)
abnormal retina outer limiting membrane morphology  (IAGP)
abnormal retinal inner plexiform layer morphology  (IAGP)
abnormal retinal outer nuclear layer morphology  (IAGP)
abnormal retinal photoreceptor layer morphology  (IAGP)
abnormal retinal photoreceptor morphology  (IAGP)
abnormal retinal rod cell morphology  (IAGP)
abnormal rod electrophysiology  (IAGP)
abnormal spatial learning  (IAGP)
absent photoreceptor inner segment  (IAGP)
absent photoreceptor outer segment  (IAGP)
astrocytosis  (IAGP)
decreased body weight  (IAGP)
decreased cell proliferation  (IAGP)
decreased exploration in new environment  (IAGP)
decreased grip strength  (IAGP)
disheveled coat  (IAGP)
disorganized retinal ganglion layer  (IAGP)
disorganized retinal outer nuclear layer  (IAGP)
hypoactivity  (IAGP)
increased neuron apoptosis  (IAGP)
increased retinal apoptosis  (IAGP)
jerky movement  (IAGP)
jumpy  (IAGP)
loss of cortex neurons  (IAGP)
microgliosis  (IAGP)
microphthalmia  (IAGP)
no abnormal phenotype detected  (IAGP)
premature neuronal precursor differentiation  (IAGP)
retinal degeneration  (IAGP)
retinal ganglion cell degeneration  (IAGP)
retinal outer nuclear layer degeneration  (IAGP)
retinal photoreceptor degeneration  (IAGP)
short photoreceptor inner segment  (IAGP)
short photoreceptor outer segment  (IAGP)
small hippocampus  (IAGP)
thin cerebral cortex  (IAGP)
thin retinal ganglion layer  (IAGP)
thin retinal inner plexiform layer  (IAGP)
thin retinal outer nuclear layer  (IAGP)
References

Additional References at PubMed
PMID:7671812   PMID:8889548   PMID:10349636   PMID:10753959   PMID:11042159   PMID:11076861   PMID:11927608   PMID:12477932   PMID:12527193   PMID:12545177   PMID:12904583   PMID:14610273  
PMID:15140881   PMID:15234345   PMID:15241471   PMID:15316081   PMID:15475968   PMID:15558731   PMID:15677456   PMID:15863617   PMID:16141072   PMID:16141073   PMID:16186258   PMID:16885194  
PMID:17507402   PMID:17584769   PMID:17920587   PMID:18403412   PMID:18799693   PMID:18824598   PMID:19506035   PMID:20237282   PMID:20399730   PMID:21145499   PMID:21267068   PMID:21382550  
PMID:21677750   PMID:22028625   PMID:22398208   PMID:22689267   PMID:23001562   PMID:23658188   PMID:24164893   PMID:24381198   PMID:24384391   PMID:24498314   PMID:25636444   PMID:25742799  
PMID:26203142   PMID:26209645   PMID:26404741   PMID:26631503   PMID:26657772   PMID:26802325   PMID:27616714   PMID:27664421   PMID:27974163   PMID:28154200   PMID:28482867   PMID:28671696  
PMID:29155075   PMID:29249622   PMID:30985297   PMID:31586559   PMID:32286224   PMID:32290105   PMID:32968282   PMID:33073849  


Genomics

Comparative Map Data
Mpp5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391278,795,606 - 78,887,488 (+)NCBIGRCm39mm39
GRCm39 Ensembl1278,795,681 - 78,887,488 (+)Ensembl
GRCm381278,748,882 - 78,840,714 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1278,748,907 - 78,840,714 (+)EnsemblGRCm38mm10GRCm38
MGSCv371279,849,934 - 79,941,701 (+)NCBIGRCm37mm9NCBIm37
MGSCv361279,667,864 - 79,756,927 (+)NCBImm8
Celera1280,213,557 - 80,305,293 (+)NCBICelera
Cytogenetic Map12C3NCBI
PALS1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1467,240,713 - 67,336,061 (+)EnsemblGRCh38hg38GRCh38
GRCh38.p13 Ensembl1467,241,342 - 67,336,061 (+)EnsemblGRCh38hg38GRCh38
GRCh381467,241,395 - 67,336,061 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh371467,708,152 - 67,802,778 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361466,777,774 - 66,872,289 (+)NCBINCBI36hg18NCBI36
Build 341466,777,773 - 66,872,288NCBI
Celera1447,767,078 - 47,861,589 (+)NCBI
Cytogenetic Map14q23.3NCBI
HuRef1447,877,875 - 47,972,701 (+)NCBIHuRef
CHM1_11467,646,631 - 67,741,468 (+)NCBICHM1_1
Mpp5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2697,548,133 - 97,654,163 (+)NCBI
Rnor_6.0 Ensembl6101,923,785 - 102,028,592 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.06101,923,675 - 102,029,705 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.06111,299,821 - 111,404,519 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.46101,414,657 - 101,471,504 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.16101,370,971 - 101,477,629 (+)NCBI
Celera695,983,793 - 96,039,503 (+)NCBICelera
Cytogenetic Map6q24NCBI
Pals1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554662,874,058 - 2,918,122 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554662,871,445 - 2,937,296 (-)NCBIChiLan1.0ChiLan1.0
PALS1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11466,693,863 - 66,790,122 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1466,693,863 - 66,790,122 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01447,814,896 - 47,911,206 (+)NCBIMhudiblu_PPA_v0panPan3
PALS1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl841,275,947 - 41,327,348 (+)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.1841,230,230 - 41,330,017 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Pals1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_00493649510,636,762 - 10,729,060 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PALS1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl790,955,680 - 91,055,620 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1790,955,524 - 91,055,923 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2797,264,802 - 97,365,354 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PALS1
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12444,483,005 - 44,576,017 (+)NCBI
ChlSab1.1 Ensembl2444,483,199 - 44,573,172 (+)Ensembl
Pals1
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462473433,659,625 - 33,758,680 (-)NCBI

Position Markers
RH136034  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381278,837,785 - 78,838,010UniSTSGRCm38
MGSCv371279,938,772 - 79,938,997UniSTSGRCm37
Celera1280,302,364 - 80,302,589UniSTS
Cytogenetic Map12C3UniSTS
AI644496  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381278,840,357 - 78,840,486UniSTSGRCm38
MGSCv371279,941,344 - 79,941,473UniSTSGRCm37
Celera1280,304,936 - 80,305,065UniSTS
Cytogenetic Map12C3UniSTS
Whitehead/MRC_RH12737.01UniSTS
07.MMHAP12FRC7.seq  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381278,803,527 - 78,803,716UniSTSGRCm38
MGSCv371279,904,514 - 79,904,703UniSTSGRCm37
Celera1280,268,291 - 80,268,480UniSTS
Cytogenetic Map12C3UniSTS
Whitehead_YAC12 UniSTS
43.MMHAP15FRG10.seq  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381278,799,801 - 78,799,906UniSTSGRCm38
MGSCv371279,900,788 - 79,900,893UniSTSGRCm37
Celera1280,264,565 - 80,264,670UniSTS
Cytogenetic Map12C3UniSTS
Whitehead_YAC12 UniSTS
UniSTS:236883  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381278,840,366 - 78,840,482UniSTSGRCm38
MGSCv371279,941,353 - 79,941,469UniSTSGRCm37
Celera1280,304,945 - 80,305,061UniSTS
Cytogenetic Map12C3UniSTS
UniSTS:236890  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381278,838,874 - 78,838,982UniSTSGRCm38
MGSCv371279,939,861 - 79,939,969UniSTSGRCm37
Celera1280,303,453 - 80,303,561UniSTS
Cytogenetic Map12C3UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
27226753Femd7_mfemur midshaft diameter 7, 10 week (mouse)12950000084100000Mouse
13207568Tcq14_mtotal cholesterol QTL 14 (mouse)121161000097210000Mouse
1558978Cplaq10_mcircadian period of locomotor activity 10 (mouse)Not determined121529102578993590Mouse
1301574Lmblgq5_mlimb length QTL 5 (mouse)Not determined121754644680910109Mouse
4142002Tbqt3_mtibia bone quality traits 3 (mouse)Not determined1235235497109969809Mouse
1357479Splwt1_mspleen weight 1 (mouse)Not determined124164639290920752Mouse
1357757Lnopy2_mlens opacity 2 (mouse)Not determined125279985286800022Mouse
1357749Vtbt13_mvertebral trabecular bone trait 13 (mouse)Not determined125308522887085371Mouse
12832727Ahrq1_mairway hyperresponsiveness QTL 1 (mouse)125464912582619165Mouse
4140993Tglq2b_mtriglyceride QTL 2b (mouse)Not determined125529146189291675Mouse
9850127Tglq6_mtriglyceride QTL6 (mouse)Not determined125529146189291675Mouse
27226728Tibl20_mtibia length 20, 16 week (mouse)125910000093900000Mouse
27226776Tibl6_mtibia length 6, 5 week (mouse)126060000092700000Mouse
10043948Pbft6_mpercent body fat 6 (mouse)Not determined126115865395158653Mouse
1301476Pbwg12_mpostnatal body weight growth 12 (mouse)Not determined126199339095993590Mouse
27226797Scvln19_msacral vertebrae length 2, 16 week (mouse)126210000099500000Mouse
10043895Bw20_mbody weight QTL 20 (mouse)Not determined126226147896261478Mouse
1301046Par3_mpulmonary adenoma resistance 3 (mouse)Not determined126390993497910109Mouse
1301337Cdcs8_mcytokine deficiency colitis susceptibility 8 (mouse)Not determined126464230998642455Mouse
1300633Cdcs7_mcytokine deficiency colitis susceptibility 7 (mouse)Not determined126464230998642455Mouse
14746976Manh73_mmandible shape 73 (mouse)126581035799810357Mouse
27226771Tibl14_mtibia length 14, 10 week (mouse)126830000098800000Mouse
27226793Feml10_mfemur length 10, 5 week (mouse)1268300000113400000Mouse
4141738Tgq23_mtriglyceride QTL 23 (mouse)Not determined72146107106146107Mouse
1301689Skull18_mskull morphology 18 (mouse)Not determined1273920648107920752Mouse
1301926Adip6_madiposity 6 (mouse)Not determined1273920648107920752Mouse
13524842Ppiq10a_mprepulse inhibition QTL 10a (mouse)1277545446111545446Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:925
Count of miRNA genes:513
Interacting mature miRNAs:639
Transcripts:ENSMUST00000082024
Prediction methods:Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_019579 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006516097 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006516098 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017315139 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030246824 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036157538 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC123869 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF199008 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK014444 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK032731 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK040265 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK086227 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK133187 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK162014 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AW488563 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BB858385 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC067404 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC075698 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC138624 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466590 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000082024   ⟹   ENSMUSP00000080683
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1278,748,992 - 78,840,714 (+)Ensembl
RefSeq Acc Id: ENSMUST00000218726
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1278,829,475 - 78,829,898 (+)Ensembl
RefSeq Acc Id: ENSMUST00000219180
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1278,834,463 - 78,838,081 (+)Ensembl
RefSeq Acc Id: ENSMUST00000219197   ⟹   ENSMUSP00000151349
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1278,748,907 - 78,840,586 (+)Ensembl
RefSeq Acc Id: ENSMUST00000219667   ⟹   ENSMUSP00000151872
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1278,748,926 - 78,809,767 (+)Ensembl
RefSeq Acc Id: NM_019579   ⟹   NP_062525
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391278,795,721 - 78,887,488 (+)NCBI
GRCm381278,748,947 - 78,840,714 (+)NCBI
MGSCv371279,849,934 - 79,941,701 (+)RGD
Celera1280,213,557 - 80,305,293 (+)RGD
cM Map12 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006516097   ⟹   XP_006516160
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391278,795,606 - 78,887,364 (+)NCBI
GRCm381278,748,887 - 78,840,590 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006516098   ⟹   XP_006516161
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391278,795,700 - 78,887,364 (+)NCBI
GRCm381278,748,926 - 78,840,590 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017315139   ⟹   XP_017170628
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391278,795,691 - 78,887,364 (+)NCBI
GRCm381278,749,078 - 78,840,590 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030246824   ⟹   XP_030102684
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391278,795,625 - 78,887,364 (+)NCBI
GRCm381278,748,882 - 78,840,590 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036157538   ⟹   XP_036013431
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391278,795,674 - 78,887,364 (+)NCBI
Reference Sequences
RefSeq Acc Id: NP_062525   ⟸   NM_019579
- UniProtKB: Q9JLB2 (UniProtKB/Swiss-Prot),   B2RRY4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006516161   ⟸   XM_006516098
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_006516160   ⟸   XM_006516097
- Peptide Label: isoform X1
- UniProtKB: Q9JLB2 (UniProtKB/Swiss-Prot),   B2RRY4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017170628   ⟸   XM_017315139
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_030102684   ⟸   XM_030246824
- Peptide Label: isoform X2
RefSeq Acc Id: ENSMUSP00000151349   ⟸   ENSMUST00000219197
RefSeq Acc Id: ENSMUSP00000151872   ⟸   ENSMUST00000219667
RefSeq Acc Id: ENSMUSP00000080683   ⟸   ENSMUST00000082024
RefSeq Acc Id: XP_036013431   ⟸   XM_036157538
- Peptide Label: isoform X3
Protein Domains
Guanylate kinase-like   L27   PDZ   SH3

Promoters
RGD ID:8678616
Promoter ID:EPDNEW_M17338
Type:initiation region
Name:Mpp5_1
Description:Mus musculus membrane protein, palmitoylated 5 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M17339  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381278,749,009 - 78,749,069EPDNEW
RGD ID:8678618
Promoter ID:EPDNEW_M17339
Type:single initiation site
Name:Mpp5_2
Description:Mus musculus membrane protein, palmitoylated 5 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M17338  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381278,789,899 - 78,789,959EPDNEW
RGD ID:6823220
Promoter ID:MM_KWN:12021
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day3,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6
Transcripts:ENSMUST00000082024,   UC007NZG.1,   UC007NZH.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361279,849,534 - 79,850,034 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1927339 AgrOrtholog
Ensembl Genes ENSMUSG00000021112 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000080683 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000151349 UniProtKB/TrEMBL
  ENSMUSP00000151872 UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000082024 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000219197 UniProtKB/TrEMBL
  ENSMUST00000219667 UniProtKB/TrEMBL
Gene3D-CATH 2.30.42.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro GK/Ca_channel_bsu UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Guanylate_kin-like_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Guanylate_kinase_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  L27_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  L27_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  L27_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  L27_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  MPP5_SH3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PDZ UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PDZ_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SH3-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SH3_domain UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:56217 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:1927339 ENTREZGENE
NCBI Gene 56217 ENTREZGENE
Pfam Guanylate_kin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  L27 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  L27_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PDZ UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SH3_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Mpp5 PhenoGen
PROSITE GUANYLATE_KINASE_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GUANYLATE_KINASE_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  L27 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PDZ UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SH3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART GuKc UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  L27 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PDZ UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SH3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF101288 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF50044 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF50156 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF52540 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A1W2P6P0_MOUSE UniProtKB/TrEMBL
  A0A1W2P7Z6_MOUSE UniProtKB/TrEMBL
  B2RRY4 ENTREZGENE, UniProtKB/TrEMBL
  MPP5_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE