Stard5 (StAR related lipid transfer domain containing 5) - Rat Genome Database

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Gene: Stard5 (StAR related lipid transfer domain containing 5) Mus musculus
Analyze
Symbol: Stard5
Name: StAR related lipid transfer domain containing 5 (Ensembl:StAR-related lipid transfer (START) domain containing 5)
RGD ID: 1317619
MGI Page MGI
Description: Predicted to enable cholesterol binding activity and cholesterol transfer activity. Predicted to be involved in cholesterol import. Predicted to act upstream of or within lipid transport. Is expressed in embryo; liver; metanephros; and small intestine. Orthologous to human STARD5 (StAR related lipid transfer domain containing 5).
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: 18B7-T7(GS; 18B7-T7(GS); 2310058G22Rik; AI607880; D7Ertd152; D7Ertd152e; StAR-related lipid transfer (START) domain containing 5; stAR-related lipid transfer protein 5; StAR-related protein 1-4E; StAR-related protein p3-15E/p3-16E; START domain-containing protein 5
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39783,281,225 - 83,291,536 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl783,281,167 - 83,302,335 (+)EnsemblGRCm39 Ensembl
GRCm38783,632,017 - 83,642,328 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl783,631,959 - 83,653,127 (+)EnsemblGRCm38mm10GRCm38
MGSCv37790,780,527 - 90,790,838 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36783,508,202 - 83,518,513 (+)NCBIMGSCv36mm8
Celera781,043,369 - 81,053,681 (+)NCBICelera
Cytogenetic Map7D3NCBI
cM Map747.43NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-schisandrin B  (ISO)
(-)-alpha-phellandrene  (ISO)
(1->4)-beta-D-glucan  (EXP)
1,2-dichloroethane  (EXP)
1,2-dimethylhydrazine  (EXP)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
3,3',4,4'-tetrachlorobiphenyl  (EXP)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4,4'-diaminodiphenylmethane  (EXP)
4,4'-sulfonyldiphenol  (ISO)
5-aza-2'-deoxycytidine  (EXP)
6-propyl-2-thiouracil  (ISO)
aflatoxin B1  (ISO)
alpha-phellandrene  (ISO)
amiodarone  (ISO)
benzo[a]pyrene  (EXP,ISO)
bisphenol A  (ISO)
buspirone  (ISO)
butanal  (ISO)
cadmium atom  (EXP,ISO)
cadmium dichloride  (EXP,ISO)
carbon nanotube  (EXP)
CGP 52608  (ISO)
chlordecone  (EXP)
cisplatin  (ISO)
copper(II) sulfate  (ISO)
crocidolite asbestos  (ISO)
Cuprizon  (ISO)
cyclosporin A  (ISO)
dexamethasone  (ISO)
dextran sulfate  (EXP)
doxorubicin  (ISO)
elemental selenium  (ISO)
epoxiconazole  (EXP)
ethanol  (EXP)
ethyl methanesulfonate  (ISO)
fenthion  (EXP)
gentamycin  (ISO)
indometacin  (ISO)
isoprenaline  (EXP)
ketoconazole  (ISO)
lipopolysaccharide  (ISO)
methyl methanesulfonate  (ISO)
ozone  (ISO)
paracetamol  (ISO)
perfluorononanoic acid  (ISO)
perfluorooctane-1-sulfonic acid  (EXP)
phenobarbital  (EXP)
pirinixic acid  (EXP)
propiconazole  (EXP)
rotenone  (ISO)
S-(1,2-dichlorovinyl)-L-cysteine  (ISO)
selenium atom  (ISO)
silicon dioxide  (EXP)
sunitinib  (ISO)
temozolomide  (ISO)
tetrachloromethane  (EXP,ISO)
thioacetamide  (ISO)
titanium dioxide  (EXP)
trichloroethene  (ISO)
trichostatin A  (ISO)
triptonide  (EXP)
troglitazone  (EXP)
trovafloxacin  (EXP)
urethane  (ISO)
valdecoxib  (ISO)
vitamin E  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2. Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Ko MS, etal., Development 2000 Apr;127(8):1737-49.
3. MGDs mouse GO annotations MGD data from the GO Consortium
4. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
5. Mouse MP Annotation Import Pipeline RGD automated import pipeline
6. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11247670   PMID:12011452   PMID:12011453   PMID:12477932   PMID:15489334   PMID:15760897   PMID:16141072  
PMID:16141073   PMID:16783635   PMID:17983586   PMID:19474188   PMID:19554387   PMID:19865483   PMID:21677750   PMID:21873635   PMID:24652767   PMID:30973865   PMID:31015253  


Genomics

Comparative Map Data
Stard5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39783,281,225 - 83,291,536 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl783,281,167 - 83,302,335 (+)EnsemblGRCm39 Ensembl
GRCm38783,632,017 - 83,642,328 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl783,631,959 - 83,653,127 (+)EnsemblGRCm38mm10GRCm38
MGSCv37790,780,527 - 90,790,838 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36783,508,202 - 83,518,513 (+)NCBIMGSCv36mm8
Celera781,043,369 - 81,053,681 (+)NCBICelera
Cytogenetic Map7D3NCBI
cM Map747.43NCBI
STARD5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381581,309,053 - 81,324,141 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1581,309,053 - 81,324,183 (-)EnsemblGRCh38hg38GRCh38
GRCh371581,601,394 - 81,616,482 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361579,392,062 - 79,403,579 (-)NCBINCBI36Build 36hg18NCBI36
Build 341579,392,062 - 79,403,579NCBI
Celera1558,542,985 - 58,554,503 (-)NCBICelera
Cytogenetic Map15q25.1NCBI
HuRef1558,363,306 - 58,374,824 (-)NCBIHuRef
CHM1_11581,722,973 - 81,734,490 (-)NCBICHM1_1
T2T-CHM13v2.01579,173,123 - 79,188,213 (-)NCBIT2T-CHM13v2.0
Stard5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81147,015,304 - 147,025,170 (+)NCBIGRCr8
mRatBN7.21137,606,151 - 137,616,017 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1137,606,177 - 137,616,469 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1145,541,568 - 145,551,324 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01152,710,583 - 152,720,339 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01145,585,775 - 145,595,531 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01145,770,135 - 145,780,001 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1145,770,135 - 145,780,001 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01146,699,154 - 146,709,020 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41139,896,268 - 139,906,134 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1129,627,481 - 129,637,270 (+)NCBICelera
Cytogenetic Map1q31NCBI
Stard5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541611,989,572 - 12,000,226 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541611,989,572 - 12,000,226 (-)NCBIChiLan1.0ChiLan1.0
STARD5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21670,581,409 - 70,596,296 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11574,746,898 - 74,758,090 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01560,299,309 - 60,310,602 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11579,254,417 - 79,265,673 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1579,254,424 - 79,265,673 (-)Ensemblpanpan1.1panPan2
STARD5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1356,462,153 - 56,472,187 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl356,461,592 - 56,470,333 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha359,112,068 - 59,122,077 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0356,885,826 - 56,895,830 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl356,885,555 - 56,895,809 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1356,395,802 - 56,405,808 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0356,601,434 - 56,611,439 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0356,940,321 - 56,950,330 (+)NCBIUU_Cfam_GSD_1.0
Stard5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640126,917,865 - 126,928,283 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648319,406,223 - 19,419,081 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648319,406,273 - 19,416,619 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
STARD5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl750,107,035 - 50,118,629 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1750,107,033 - 50,118,652 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2755,706,942 - 55,718,553 (-)NCBISscrofa10.2Sscrofa10.2susScr3
STARD5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1262,067,420 - 2,079,132 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl262,067,456 - 2,077,949 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666048139,811,416 - 139,823,426 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Stard5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476820,584,581 - 20,594,826 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476820,584,583 - 20,594,842 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Stard5
398 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1866
Count of miRNA genes:794
Interacting mature miRNAs:1022
Transcripts:ENSMUST00000075418, ENSMUST00000117410, ENSMUST00000130723, ENSMUST00000146469, ENSMUST00000150174
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300722Sle3_msystemic lupus erythmatosus susceptibility 3 (mouse)Not determined7351172887142720Mouse
25314307Mlh1fc2_mMLH1 foci count 2 (mouse)76502999133501729Mouse
12792978Fbmd3_mfemoral bone mineral density 3, females only (mouse)77050288142367832Mouse
10412199Sst2_msusceptibility to tuberculosis 2 (mouse)Not determined718728794119485380Mouse
1301158Eae4_msusceptibility to experimental allergic encephalomyelitis 4 (mouse)Not determined719147398141919804Mouse
26884404Huml1_mhumerus length 1, 5 week (mouse)730199425108999207Mouse
1301514Rigs1_mradiation induced gastroschisis 1 (mouse)Not determined73628001592394346Mouse
1301082Bbaa16_mB.burgdorferi-associated arthritis 16 (mouse)Not determined736280015116416877Mouse
25314303Vmm4_mvariable multisystem mineralization 4, kidney (mouse)73729942587049208Mouse
1300791Abbp3_mA/J and C57BL/6 blood pressure 3 (mouse)Not determined739673887103510010Mouse
10043926Bw1n_mbody weight 1 in NSY (mouse)Not determined745161966118693530Mouse
10053685Eae43_mexperimental allergic encephalomyelitis susceptibility 43 (mouse)Not determined75112495485125093Mouse
10054064Bwq11_mbody weight QTL 11 (mouse)Not determined75112495485125093Mouse
13208555Lgth10_mbody length 10 (mouse)751649748125599172Mouse
12880418V125Dq6_mvitamin D active form serum level QTL 6 (mouse)75214974886149748Mouse
27226751Femd5_mfemur midshaft diameter 5, 10 week (mouse)753249748143153737Mouse
25823170Hrsq7_mhost response to SARS QTL 7, log titer (mouse)754819589116822815Mouse
11565101Tsve1_mvariable short tail (Tsv) enhancer 1 (mouse)75588950887142720Mouse
27226778Femd11_mfemur midshaft diameter 11, 16 week (mouse)756949748134001729Mouse
1300952Hcs1_mhepatocarcinogenesis susceptibility 1 (mouse)Not determined75732612191326352Mouse
1301465Egrm3_mearly growth rate (mouse)Not determined75732612191326352Mouse
1301663Skull9_mskull morphology 9 (mouse)Not determined75732612191326352Mouse
26884408Bzwq13_mbi-zygomatic width QTL 13, 16 week (mouse)761749748121399223Mouse
27095916Scvln15_msacral vertebrae length 2, 16 week (mouse)761749748123699223Mouse
25314305Vmm6_mvariable multisystem mineralization 6, eye (mouse)761849748102749207Mouse
1301383Aem2_manti-erythrocyte autoantibody modifier 2 (mouse)Not determined76413542498135653Mouse
26884381Bzwq2_mbi-zygomatic width QTL 2, 5 week (mouse)76524974896949207Mouse
26884440Sklq4_mskull length QTL 4, 5 week (mouse)765249748126499172Mouse
11553865Stmm1c_mskin tumor modifier of MSM 1c (mouse)76578898699788986Mouse
11553866Stmm1d_mskin tumor modifier of MSM 1d (mouse)76578898699788986Mouse
27095937Ulnl7_mulna length 7, 10 week (mouse)76644974898349207Mouse
12801463Rta1_mretinal aging 1 (mouse)76716802789089989Mouse
1301826Pgia3_mproteoglycan induced arthritis 3 (mouse)Not determined767290094101290240Mouse
1301784Ses2_msalmonella enteritidis susceptibility 2 (mouse)Not determined767290094101290240Mouse
1300620Pgia21_mproteoglycan induced arthritis 21 (mouse)Not determined767290094101290240Mouse
26884418Bzwq7_mbi-zygomatic width QTL 7, 10 week (mouse)767849748105449207Mouse
27226715Metcl3_mmetatarsal-calcaneal length 3, 5 week (mouse)767849748119499223Mouse
26884444Sklq8_mskull length QTL 8, 10 week (mouse)767849748124199223Mouse
26884451Sklq14_mskull length QTL 14, 16 week (mouse)767849748124999172Mouse
1300654Bomd1_mbone mineral density 1 (mouse)Not determined768365595102365702Mouse
27095907Scvln4_msacral vertebrae length 2, 5 week (mouse)769949748120499223Mouse
1301155Bpq7_mblood pressure QTL 7 (mouse)Not determined770143137104143379Mouse
10043973Obq29_mobesity QTL 29 (mouse)Not determined772263372106263372Mouse
4142319Powg_mpost-ovarectomy weight gain (mouse)Not determined7285710592582163Mouse
27095910Pglq13_mpelvic girdle length QTL 13, 16 week (mouse)773049748125699172Mouse
27095933Ulnl3_mulna length 3, 5 week (mouse)773149748143153737Mouse
11553869Stmm2b_mskin tumor modifier of MSM 2a (mouse)773725965107725965Mouse
4142212Png1_mPostnatal growth 1 (mouse)Not determined7432612192394346Mouse
27226745Metcl9_mmetatarsal-calcaneal length 9, 10 week (mouse)774849748122199223Mouse
27226781Tibl3_mtibia length 3, 5 week (mouse)774849748122199223Mouse
1301566Adip3_madiposity 3 (mouse)Not determined775394215109394346Mouse
14746989Manh62_mmandible shape 62 (mouse)775742528109742528Mouse
26884398Humsd6_mhumerus midshaft diameter 6, 16 week (mouse)778649748136901729Mouse
10412110Cctq1_mcentral corneal thickness QTL 1 (mouse)Not determined780551681114551791Mouse
4142500Morq1_mmodifier of Rs1 QTL 1 (mouse)Not determined80551681114551791Mouse
27095930Ulnl10_mulna length 10, 16 week (mouse)780849748126699172Mouse
27095923Pglq3_mpelvic girdle length QTL 3, 5 week (mouse)781249748124199223Mouse
27095903Scvln10_msacral vertebrae length 2, 10 week (mouse)781449748126499172Mouse
27226765Tibl18_mtibia length 18, 16 week (mouse)781849748126499172Mouse

Markers in Region
AI607880  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38783,641,942 - 83,642,067UniSTSGRCm38
MGSCv37790,790,452 - 90,790,577UniSTSGRCm37
Celera781,053,295 - 81,053,420UniSTS
Cytogenetic Map7D3UniSTS
cM Map741.2UniSTS
Whitehead/MRC_RH7896.08UniSTS
RH126299  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38783,640,837 - 83,641,036UniSTSGRCm38
MGSCv37790,789,347 - 90,789,546UniSTSGRCm37
Celera794,308,318 - 94,308,517UniSTS
Celera781,052,190 - 81,052,389UniSTS
Cytogenetic Map7D3UniSTS
cM Map741.2UniSTS
Whitehead/MRC_RH7902.75UniSTS


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000075418   ⟹   ENSMUSP00000074872
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl783,281,167 - 83,291,536 (+)Ensembl
GRCm38.p6 Ensembl783,631,959 - 83,642,328 (+)Ensembl
RefSeq Acc Id: ENSMUST00000117410   ⟹   ENSMUSP00000112781
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl783,281,208 - 83,302,335 (+)Ensembl
GRCm38.p6 Ensembl783,632,000 - 83,653,127 (+)Ensembl
RefSeq Acc Id: ENSMUST00000130723
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl783,281,761 - 83,282,563 (+)Ensembl
GRCm38.p6 Ensembl783,632,553 - 83,633,355 (+)Ensembl
RefSeq Acc Id: ENSMUST00000146469
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl783,281,208 - 83,282,679 (+)Ensembl
GRCm38.p6 Ensembl783,632,000 - 83,633,471 (+)Ensembl
RefSeq Acc Id: ENSMUST00000150174
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl783,281,224 - 83,287,283 (+)Ensembl
GRCm38.p6 Ensembl783,632,016 - 83,638,075 (+)Ensembl
RefSeq Acc Id: NM_023377   ⟹   NP_075866
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39783,281,225 - 83,291,536 (+)NCBI
GRCm38783,632,017 - 83,642,328 (+)ENTREZGENE
MGSCv37790,780,527 - 90,790,838 (+)RGD
Celera781,043,369 - 81,053,681 (+)RGD
cM Map7 ENTREZGENE
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_075866   ⟸   NM_023377
- UniProtKB: Q9CQY0 (UniProtKB/Swiss-Prot),   Q9EPQ6 (UniProtKB/Swiss-Prot),   Q9EPQ7 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSMUSP00000074872   ⟸   ENSMUST00000075418
RefSeq Acc Id: ENSMUSP00000112781   ⟸   ENSMUST00000117410
Protein Domains
START

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9EPQ7-F1-model_v2 AlphaFold Q9EPQ7 1-213 view protein structure

Promoters
RGD ID:8664663
Promoter ID:EPDNEW_M10363
Type:multiple initiation site
Name:Stard5_1
Description:Mus musculus StAR-related lipid transfer domain containing 5, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38783,632,000 - 83,632,060EPDNEW
RGD ID:6840523
Promoter ID:MM_KWN:51390
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000117410,   OTTMUST00000067536,   OTTMUST00000067539,   OTTMUST00000067540,   OTTMUST00000067541,   UC009IDP.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36790,780,311 - 90,781,362 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2156765 AgrOrtholog
Ensembl Genes ENSMUSG00000046027 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000075418 ENTREZGENE
  ENSMUST00000075418.15 UniProtKB/Swiss-Prot
  ENSMUST00000117410.2 UniProtKB/TrEMBL
Gene3D-CATH 3.30.530.20 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro StAR-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  StARD5/6 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  START-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  START_lipid-bd_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:170460 UniProtKB/Swiss-Prot
MGD MGI:2156765 ENTREZGENE
NCBI Gene 170460 ENTREZGENE
PANTHER PTHR46374 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR46374:SF3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam START UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Stard5 PhenoGen
PRINTS STARPROTEIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE START UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART START UniProtKB/Swiss-Prot
Superfamily-SCOP Bet v1-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt D3YU00_MOUSE UniProtKB/TrEMBL
  Q78RK2_MOUSE UniProtKB/TrEMBL
  Q78YL5_MOUSE UniProtKB/TrEMBL
  Q9CQY0 ENTREZGENE
  Q9EPQ6 ENTREZGENE
  Q9EPQ7 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary Q9CQY0 UniProtKB/Swiss-Prot
  Q9EPQ6 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-09-13 Stard5  StAR related lipid transfer domain containing 5  Stard5  StAR-related lipid transfer (START) domain containing 5  Symbol and/or name change 5135510 APPROVED