Trp53bp1 (transformation related protein 53 binding protein 1) - Rat Genome Database

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Gene: Trp53bp1 (transformation related protein 53 binding protein 1) Mus musculus
Analyze
Symbol: Trp53bp1
Name: transformation related protein 53 binding protein 1
RGD ID: 1317578
MGI Page MGI
Description: Exhibits damaged DNA binding activity; methylated histone binding activity; and telomeric DNA binding activity. Involved in double-strand break repair via nonhomologous end joining; negative regulation of double-strand break repair via homologous recombination; and positive regulation of isotype switching. Localizes to DNA repair complex; chromosome; and nuclear body. Is expressed in ileum; lung; metanephros; nervous system; and sensory organ. Orthologous to human TP53BP1 (tumor protein p53 binding protein 1); PARTICIPATES IN ataxia telangiectasia-mutated (ATM) signaling pathway; histone modification pathway; non-homologous end joining pathway of double-strand break repair; INTERACTS WITH 1,2-dimethylhydrazine; 1H-pyrazole; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: 53BP; 53BP1; m53BP1; MGC100303; murine p53-binding protein; p53-binding protein 1; p53B; p53BP1; TP53-binding protein 1; Tp53bp1; transformation related protein 53 binding-protein 1; tumor suppressor p53-binding protein 1
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392121,025,316 - 121,126,830 (-)NCBIGRCm39mm39
GRCm39 Ensembl2121,023,762 - 121,101,888 (-)Ensembl
GRCm382121,194,835 - 121,296,354 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2121,193,281 - 121,271,407 (-)EnsemblGRCm38mm10GRCm38
MGSCv372121,022,463 - 121,097,122 (-)NCBIGRCm37mm9NCBIm37
MGSCv362120,889,692 - 120,962,561 (-)NCBImm8
Celera2122,348,714 - 122,423,035 (-)NCBICelera
Cytogenetic Map2E5NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-epigallocatechin 3-gallate  (ISO)
1,2-dimethylhydrazine  (EXP)
17beta-estradiol  (ISO)
1H-pyrazole  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4-(N-nitrosomethylamino)-1-(3-pyridyl)butan-1-one  (ISO)
4-hydroxyphenyl retinamide  (ISO)
5'-phosphopyridoxal-6-azobenzene-2,4-disulfonic acid  (ISO)
acrolein  (ISO)
adenosine  (ISO)
adenosine 5'-monophosphate  (ISO)
ADP  (ISO)
aflatoxin B1  (EXP,ISO)
all-trans-retinoic acid  (ISO)
alpha-pinene  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
ATP  (ISO)
atrazine  (ISO)
benzo[a]pyrene  (EXP,ISO)
biphenyl-4-amine  (ISO)
bis(2-chloroethyl) sulfide  (ISO)
bisphenol A  (ISO)
bisphenol F  (ISO)
bortezomib  (ISO)
brefeldin A  (ISO)
chromium(6+)  (ISO)
cisplatin  (EXP,ISO)
crocidolite asbestos  (EXP,ISO)
cyclosporin A  (ISO)
dexamethasone  (ISO)
dibutyl phthalate  (EXP)
doxorubicin  (ISO)
enzyme inhibitor  (ISO)
ethanol  (EXP)
etoposide  (ISO)
folic acid  (EXP)
GDP  (ISO)
geldanamycin  (ISO)
gemcitabine  (ISO)
GTP  (ISO)
guanosine  (ISO)
hexadecanoic acid  (ISO)
hydrogen peroxide  (EXP)
IDP  (ISO)
indometacin  (ISO)
inosine  (ISO)
mercury dichloride  (ISO)
methylmercury chloride  (ISO)
N-methyl-N-nitrosourea  (ISO)
nitric oxide  (EXP)
oxaliplatin  (ISO)
oxybenzone  (ISO)
ozone  (ISO)
paracetamol  (EXP)
pentachlorophenol  (EXP)
phenobarbital  (EXP)
potassium chromate  (ISO)
propylparaben  (ISO)
rac-1,2-dichloropropane  (ISO)
sodium arsenate  (EXP)
sodium arsenite  (ISO)
tamoxifen  (EXP)
tert-butyl hydroperoxide  (ISO)
thimerosal  (ISO)
thioacetamide  (ISO)
torcetrapib  (ISO)
trichostatin A  (ISO)
triptonide  (EXP)
tungsten  (EXP)
UDP  (ISO)
UTP  (ISO)
valproic acid  (ISO)
vorinostat  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

Additional References at PubMed
PMID:8889548   PMID:8910340   PMID:10349636   PMID:10862698   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11217851   PMID:11544199   PMID:11801725   PMID:11934988   PMID:12477932  
PMID:12520002   PMID:12578828   PMID:12640136   PMID:12792649   PMID:12819125   PMID:12904583   PMID:14610273   PMID:15077110   PMID:15159415   PMID:15341721   PMID:15364958   PMID:15489334  
PMID:15542852   PMID:15782199   PMID:15840649   PMID:16009723   PMID:16107646   PMID:16141072   PMID:16141073   PMID:16260621   PMID:16400328   PMID:16492765   PMID:16602821   PMID:17053789  
PMID:17183606   PMID:17452983   PMID:17500065   PMID:17599403   PMID:18158901   PMID:18504301   PMID:18676810   PMID:18678890   PMID:18722365   PMID:18799693   PMID:18931658   PMID:18931659  
PMID:19001091   PMID:19223465   PMID:19379695   PMID:19386638   PMID:19414588   PMID:19433796   PMID:19450527   PMID:19598117   PMID:19633665   PMID:19716796   PMID:19876815   PMID:19948482  
PMID:20010693   PMID:20059953   PMID:20080757   PMID:20126263   PMID:20231360   PMID:20362325   PMID:20368578   PMID:20385748   PMID:20421415   PMID:20588252   PMID:20724228   PMID:21267068  
PMID:21383990   PMID:21536733   PMID:21549309   PMID:21701264   PMID:21734301   PMID:21746928   PMID:21750527   PMID:21779340   PMID:21873635   PMID:21931182   PMID:22083510   PMID:22308489  
PMID:22355127   PMID:22445484   PMID:22508511   PMID:22556254   PMID:22915756   PMID:23209566   PMID:23241889   PMID:23249736   PMID:23254285   PMID:23271346   PMID:23290917   PMID:23306437  
PMID:23306439   PMID:23333305   PMID:23333306   PMID:23345425   PMID:23352430   PMID:23657012   PMID:23683352   PMID:23714778   PMID:23727112   PMID:23760478   PMID:23858098   PMID:23892236  
PMID:23969417   PMID:24001775   PMID:24013561   PMID:24217620   PMID:24324146   PMID:24611931   PMID:24703952   PMID:24706806   PMID:24725274   PMID:24842372   PMID:24914237   PMID:25049398  
PMID:25264618   PMID:25294941   PMID:25344324   PMID:25515659   PMID:26123487   PMID:26303202   PMID:26308889   PMID:26365490   PMID:26496610   PMID:26544937   PMID:26745185   PMID:26774285  
PMID:27251002   PMID:27320916   PMID:27670884   PMID:27820601   PMID:27869164   PMID:28051062   PMID:28159901   PMID:28199841   PMID:28276606   PMID:28671696   PMID:28893945   PMID:28912125  
PMID:29078319   PMID:29311308   PMID:29378830   PMID:29520062   PMID:29620483   PMID:29923310   PMID:30022158   PMID:30022168   PMID:30046110   PMID:30239864   PMID:30257212   PMID:30297459  
PMID:30312172   PMID:30333137   PMID:30352856   PMID:30530501   PMID:30620991   PMID:30668564   PMID:30704900   PMID:31267601   PMID:31320710   PMID:31390554   PMID:31506606   PMID:31541646  
PMID:31629252   PMID:31653568   PMID:32051414   PMID:32139898   PMID:33087478   PMID:33200984   PMID:33410253  


Genomics

Comparative Map Data
Trp53bp1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392121,025,316 - 121,126,830 (-)NCBIGRCm39mm39
GRCm39 Ensembl2121,023,762 - 121,101,888 (-)Ensembl
GRCm382121,194,835 - 121,296,354 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2121,193,281 - 121,271,407 (-)EnsemblGRCm38mm10GRCm38
MGSCv372121,022,463 - 121,097,122 (-)NCBIGRCm37mm9NCBIm37
MGSCv362120,889,692 - 120,962,561 (-)NCBImm8
Celera2122,348,714 - 122,423,035 (-)NCBICelera
Cytogenetic Map2E5NCBI
TP53BP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1543,403,061 - 43,510,728 (-)EnsemblGRCh38hg38GRCh38
GRCh381543,403,061 - 43,510,640 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh371543,695,259 - 43,802,838 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361541,486,699 - 41,590,028 (-)NCBINCBI36hg18NCBI36
Build 341541,486,698 - 41,590,028NCBI
Celera1520,470,061 - 20,573,379 (-)NCBI
Cytogenetic Map15q15.3NCBI
HuRef1520,547,443 - 20,650,644 (-)NCBIHuRef
CHM1_11543,818,081 - 43,921,400 (-)NCBICHM1_1
Tp53bp1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.23108,166,574 - 108,270,229 (-)NCBI
Rnor_6.0 Ensembl3113,160,000 - 113,231,790 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.03113,160,030 - 113,259,701 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.03119,697,122 - 119,799,485 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43107,994,425 - 108,071,133 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.13107,897,216 - 107,968,850 (-)NCBI
Celera3107,073,150 - 107,144,062 (-)NCBICelera
Cytogenetic Map3q35NCBI
Tp53bp1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554169,962,897 - 10,035,278 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554169,962,736 - 10,035,433 (-)NCBIChiLan1.0ChiLan1.0
TP53BP1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11540,519,012 - 40,626,845 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1540,519,012 - 40,626,741 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01522,364,696 - 22,472,499 (-)NCBIMhudiblu_PPA_v0panPan3
TP53BP1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13010,263,650 - 10,362,646 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3010,263,650 - 10,336,134 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3010,322,230 - 10,419,975 (-)NCBI
ROS_Cfam_1.03010,399,747 - 10,497,632 (-)NCBI
UMICH_Zoey_3.13010,316,018 - 10,388,325 (-)NCBI
UNSW_CanFamBas_1.03010,437,331 - 10,535,512 (-)NCBI
UU_Cfam_GSD_1.03010,557,080 - 10,655,185 (-)NCBI
Tp53bp1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864088,741,332 - 88,837,137 (-)NCBI
SpeTri2.0NW_0049364716,589,395 - 6,668,242 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TP53BP1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1127,958,518 - 128,028,718 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11127,958,500 - 128,032,370 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21142,694,698 - 142,705,941 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TP53BP1
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12639,489,925 - 39,595,096 (+)NCBI
ChlSab1.1 Ensembl2639,508,600 - 39,594,927 (+)Ensembl
Tp53bp1
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462480410,517,531 - 10,612,238 (-)NCBI

Position Markers
UniSTS:234509  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm382121,197,776 - 121,197,980UniSTSGRCm38
MGSCv372121,023,512 - 121,023,716UniSTSGRCm37
Celera2122,349,763 - 122,349,967UniSTS
Cytogenetic Map2E5UniSTS
Cytogenetic Map2F1UniSTS
cM Map269.0UniSTS
RH127268  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm382121,196,793 - 121,197,018UniSTSGRCm38
MGSCv372121,022,529 - 121,022,754UniSTSGRCm37
Celera2122,348,780 - 122,349,005UniSTS
Cytogenetic Map2F1UniSTS
Cytogenetic Map2E5UniSTS
cM Map269.0UniSTS
MARC_10287-10288:998927046:1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm382121,207,770 - 121,208,092UniSTSGRCm38
MGSCv372121,033,506 - 121,033,828UniSTSGRCm37
Celera2122,359,668 - 122,359,990UniSTS
Cytogenetic Map2E5UniSTS
RH68009  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm382121,198,376 - 121,198,497UniSTSGRCm38
MGSCv372121,024,112 - 121,024,233UniSTSGRCm37
Celera2122,350,363 - 122,350,484UniSTS
Cytogenetic Map2F1UniSTS
Cytogenetic Map2E5UniSTS
cM Map269.0UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1302174Dssc2_mdextran sodium sulfate induced colitis QTL2 (mouse)Not determined224334620148858457Mouse
4141854T2dm2sa_mtype 2 diabetes mellitus 2 in SMXA RI mice (mouse)Not determined229417935148533014Mouse
1301344Lith1_mlithogenic gene 1 (mouse)Not determined245457623145470727Mouse
13824983Vclq1_mcurvilinear velocity QTL 1 (mouse)262000000137000000Mouse
5491197Mobq5_mmultigenic obesity QTL 5 (mouse)Not determined265439402162677006Mouse
11528549Sluc31_msusceptibility to lung cancer 31 (mouse)274693773129371085Mouse
4141155Plast2b_mplasma plant sterol 2b (mouse)Not determined284182854148680255Mouse
10412082Hylaq1_mHyperlocomotor activity related QTL 1 (mouse)Not determined284182854148825550Mouse
5491196Mobq6_mmultigenic obesity QTL 6 (mouse)Not determined285893925181254801Mouse
1301834Bits1_mbitterness sensitivity 1 (mouse)Not determined287610298121610433Mouse
11532731Sluc31a_msusceptibility to lung cancer 31a (mouse)288184658122184825Mouse
4142223Femwf4_mfemur work to failure 4 (mouse)Not determined88313078122313225Mouse
1301098Cd8mts3_mCD8 memory T cell subset 3 (mouse)Not determined291259629125259759Mouse
1301909Smdq2_msegregation of mitochondrial DNA QTL 2 (mouse)Not determined292948120126948262Mouse
27226761Feml18_mfemur length 18, 16 week (mouse)294400000154400000Mouse
11049568Lmr28c_mleishmaniasis resistance 28c (mouse)297292889131293051Mouse
11049569Lmr28d_mleishmaniasis resistance 28d (mouse)297292889131293051Mouse
12904935Edlmmq2_mextensor digitorum longus muscle mass QTL 2 (mouse)297379883131379883Mouse
12904954Gmmq2_mgastrocnemius muscle mass QTL 2 (mouse)297379883131379883Mouse
4141802Ignpq1_mIgA nephropathy QTL 1 (mouse)Not determined2100993579134993788Mouse
1301330Tbbmd2_mtotal body bone mineral density 2 (mouse)Not determined2101112449135112609Mouse
1302203Gvhd3_mgraft-versus host disease 3 (mouse)Not determined2101112449135112609Mouse
1302071Fembrs1_mfemur breaking strength 1 (mouse)Not determined2101112449135112609Mouse
27226788Feml13_mfemur length 13, 10 week (mouse)2102800000160100000Mouse
11041906Lmr28a_mleishmaniasis resistance 28a (mouse)2103265371129371085Mouse
11038702Ltpr2_mLeishmania tropica response 2 (mouse)2103265371167370436Mouse
1301825Pbrgcsf1_mperipheral blood stem cell response to granulocyte colony stimulating factor 1 (mouse)Not determined2106391660140391809Mouse
10043875Bw25_mbody weight QTL 25 (mouse)Not determined2107413756141413756Mouse
1301087Bbaa15_mB.burgdorferi-associated arthritis 15 (mouse)Not determined2110647738144647887Mouse
10045885Cplaq15_mcircadian period of locomotor activity 15 (mouse)Not determined2111085773154512747Mouse
1300793Pcfm2_mperiosteal circumference and femur length 2 (mouse)Not determined2111331784145331901Mouse
1301755Hrq1_mheart rate quantitative locus 1 (mouse)Not determined2111331784145331901Mouse
1301905Lgth2_mbody length 2 (mouse)Not determined2111331784145331901Mouse
1558990Skmw9_mskeletal muscle weight 9 (mouse)Not determined2111331784145331901Mouse
1301201Chab1_mcholesterol absorption 1 (mouse)Not determined2111709108145709243Mouse
1302033Nsv1_mNeuroadapted Sindbis viral RNA level 1 (mouse)Not determined2111781466145781606Mouse
1300798Actre3_mactivity response to ethanol 3 (mouse)Not determined2112194642128331901Mouse
1301415Actre4_mactivity response to ethanol 4 (mouse)Not determined2112194642128331901Mouse
11038699Ltpr2b_mLeishmania tropica response 2b (mouse)2112370826146371085Mouse
11038700Ltpr2a_mLeishmania tropica response 2a (mouse)2112370826146371085Mouse
11039520Ltpr2h_mLeishmania tropica response 2h (mouse)2112370826146371085Mouse
1301029T2dm3_mtype 2 diabetes mellitus 3 (mouse)Not determined2114457594132872237Mouse
11038696Ltpr2f_mLeishmania tropica response 2f (mouse)2115370937149371074Mouse
11039521Ltpr2g_mLeishmania tropica response 2g (mouse)2115370937149371074Mouse
13506762Tbvq2_mtrabecular bone volume QTL 2 (mouse)2115600000124900000Mouse
1558825Aabpr_maberrant activation of B cell proliferation (mouse)Not determined2116202748122377053Mouse
1301295Prdt1_mprion disease incubation time 1 (mouse)Not determined2116235703150235821Mouse
1558881Ses7_msalmonella enteritidis susceptibility 7 (mouse)Not determined2116464410150464554Mouse
1301618Bglu1_mblood glucose level 1 (mouse)Not determined2118112449174483070Mouse
12904007Cfq7_mconditioned fear QTL 7 (mouse)2118526291125206952Mouse
12910795Pwbwq5_mpost-weaning body weight QTL 5 (mouse)2118758772160769245Mouse
12910799Pwgrq2_mpre-weaning growth rate QTL 2 (mouse)2118758772160769245Mouse
12910812Pwgrq1_mpre-weaning growth rate QTL 1 (mouse)2118758772160769245Mouse
12910814Pwbwq1_mpre-weaning body weight QTL 1 (mouse)2118758772160769245Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:6149
Count of miRNA genes:984
Interacting mature miRNAs:1483
Transcripts:ENSMUST00000110647, ENSMUST00000110648, ENSMUST00000124031, ENSMUST00000124060, ENSMUST00000124411, ENSMUST00000124554, ENSMUST00000129752, ENSMUST00000131245, ENSMUST00000131426, ENSMUST00000132812, ENSMUST00000135890, ENSMUST00000136617, ENSMUST00000140285, ENSMUST00000140582, ENSMUST00000142400, ENSMUST00000147540, ENSMUST00000147554, ENSMUST00000154426, ENSMUST00000156493
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001290830 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_013735 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006499661 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006499662 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006499668 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011239581 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011239582 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011239583 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011239584 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011239585 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017318936 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017318937 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030251685 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030251686 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030251687 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030251688 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036162266 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036162267 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036162268 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036162269 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036162270 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_003953350 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004940621 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AJ414734 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK029832 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK036324 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK045077 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK045416 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK045851 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK132323 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK148123 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK182369 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL845466 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL929059 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC035206 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC037378 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC079906 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BE943701 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY777325 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CA315900 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CA316961 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CA327869 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CA752558 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CD539142 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CF744583 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466519 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U67885 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000110647   ⟹   ENSMUSP00000106277
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl2121,194,838 - 121,271,341 (-)Ensembl
RefSeq Acc Id: ENSMUST00000110648   ⟹   ENSMUSP00000106278
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl2121,194,838 - 121,271,407 (-)Ensembl
RefSeq Acc Id: ENSMUST00000124031
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl2121,232,100 - 121,235,821 (-)Ensembl
RefSeq Acc Id: ENSMUST00000124060
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl2121,269,630 - 121,271,370 (-)Ensembl
RefSeq Acc Id: ENSMUST00000124411
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl2121,208,845 - 121,221,232 (-)Ensembl
RefSeq Acc Id: ENSMUST00000124554   ⟹   ENSMUSP00000122629
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl2121,208,420 - 121,221,241 (-)Ensembl
RefSeq Acc Id: ENSMUST00000129752   ⟹   ENSMUSP00000120451
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl2121,236,824 - 121,252,027 (-)Ensembl
RefSeq Acc Id: ENSMUST00000131245   ⟹   ENSMUSP00000114457
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl2121,216,143 - 121,271,321 (-)Ensembl
RefSeq Acc Id: ENSMUST00000131426
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl2121,258,886 - 121,270,286 (-)Ensembl
RefSeq Acc Id: ENSMUST00000132812
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl2121,205,081 - 121,208,574 (-)Ensembl
RefSeq Acc Id: ENSMUST00000135890
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl2121,193,281 - 121,211,975 (-)Ensembl
RefSeq Acc Id: ENSMUST00000136617
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl2121,256,514 - 121,271,369 (-)Ensembl
RefSeq Acc Id: ENSMUST00000140285
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl2121,267,312 - 121,271,361 (-)Ensembl
RefSeq Acc Id: ENSMUST00000140582
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl2121,211,308 - 121,218,436 (-)Ensembl
RefSeq Acc Id: ENSMUST00000142400   ⟹   ENSMUSP00000119425
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl2121,228,369 - 121,235,689 (-)Ensembl
RefSeq Acc Id: ENSMUST00000147540   ⟹   ENSMUSP00000119793
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl2121,198,251 - 121,236,006 (-)Ensembl
RefSeq Acc Id: ENSMUST00000147554
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl2121,199,639 - 121,204,981 (-)Ensembl
RefSeq Acc Id: ENSMUST00000154426   ⟹   ENSMUSP00000117548
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl2121,202,693 - 121,207,762 (-)Ensembl
RefSeq Acc Id: ENSMUST00000156493
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl2121,215,889 - 121,221,379 (-)Ensembl
RefSeq Acc Id: NM_001290830   ⟹   NP_001277759
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392121,025,316 - 121,101,888 (-)NCBI
GRCm382121,194,835 - 121,271,407 (-)NCBI
Celera2122,346,827 - 122,423,056 (-)NCBI
Sequence:
RefSeq Acc Id: NM_013735   ⟹   NP_038763
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392121,025,316 - 121,101,888 (-)NCBI
GRCm382121,194,835 - 121,271,407 (-)NCBI
MGSCv372121,022,463 - 121,097,122 (-)RGD
Celera2122,346,827 - 122,423,056 (-)NCBI
cM Map2 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006499661   ⟹   XP_006499724
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392121,025,316 - 121,120,858 (-)NCBI
GRCm382121,194,835 - 121,290,345 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006499662   ⟹   XP_006499725
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392121,028,732 - 121,101,446 (-)NCBI
GRCm382121,198,251 - 121,270,960 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006499668   ⟹   XP_006499731
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392121,028,732 - 121,078,016 (-)NCBI
GRCm382121,198,251 - 121,236,006 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011239581   ⟹   XP_011237883
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392121,025,316 - 121,120,858 (-)NCBI
GRCm382121,194,835 - 121,290,345 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011239582   ⟹   XP_011237884
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392121,028,732 - 121,120,858 (-)NCBI
GRCm382121,198,262 - 121,290,345 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011239583   ⟹   XP_011237885
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392121,028,732 - 121,120,858 (-)NCBI
GRCm382121,198,251 - 121,290,345 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011239584   ⟹   XP_011237886
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392121,025,316 - 121,120,858 (-)NCBI
GRCm382121,194,835 - 121,290,345 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011239585   ⟹   XP_011237887
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392121,041,816 - 121,120,858 (-)NCBI
GRCm382121,211,335 - 121,290,345 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017318936   ⟹   XP_017174425
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392121,025,316 - 121,120,858 (-)NCBI
GRCm382121,194,835 - 121,290,345 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017318937   ⟹   XP_017174426
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392121,025,316 - 121,120,858 (-)NCBI
GRCm382121,194,835 - 121,290,345 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030251685   ⟹   XP_030107545
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392121,025,316 - 121,102,521 (-)NCBI
GRCm382121,194,835 - 121,272,041 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030251686   ⟹   XP_030107546
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392121,025,316 - 121,126,830 (-)NCBI
GRCm382121,194,835 - 121,296,354 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030251687   ⟹   XP_030107547
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392121,028,732 - 121,120,858 (-)NCBI
GRCm382121,198,251 - 121,290,302 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030251688   ⟹   XP_030107548
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392121,028,732 - 121,101,942 (-)NCBI
GRCm382121,198,251 - 121,271,461 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036162266   ⟹   XP_036018159
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392121,025,316 - 121,120,858 (-)NCBI
RefSeq Acc Id: XM_036162267   ⟹   XP_036018160
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392121,025,316 - 121,120,858 (-)NCBI
RefSeq Acc Id: XM_036162268   ⟹   XP_036018161
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392121,028,732 - 121,120,858 (-)NCBI
RefSeq Acc Id: XM_036162269   ⟹   XP_036018162
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392121,028,732 - 121,120,858 (-)NCBI
RefSeq Acc Id: XM_036162270   ⟹   XP_036018163
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392121,025,316 - 121,120,858 (-)NCBI
RefSeq Acc Id: XR_003953350
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392121,035,401 - 121,120,858 (-)NCBI
GRCm382121,204,920 - 121,290,345 (-)NCBI
Sequence:
RefSeq Acc Id: XR_004940621
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392121,030,253 - 121,120,858 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001277759 (Get FASTA)   NCBI Sequence Viewer  
  NP_038763 (Get FASTA)   NCBI Sequence Viewer  
  XP_006499724 (Get FASTA)   NCBI Sequence Viewer  
  XP_006499725 (Get FASTA)   NCBI Sequence Viewer  
  XP_006499731 (Get FASTA)   NCBI Sequence Viewer  
  XP_011237883 (Get FASTA)   NCBI Sequence Viewer  
  XP_011237884 (Get FASTA)   NCBI Sequence Viewer  
  XP_011237885 (Get FASTA)   NCBI Sequence Viewer  
  XP_011237886 (Get FASTA)   NCBI Sequence Viewer  
  XP_011237887 (Get FASTA)   NCBI Sequence Viewer  
  XP_017174425 (Get FASTA)   NCBI Sequence Viewer  
  XP_017174426 (Get FASTA)   NCBI Sequence Viewer  
  XP_030107545 (Get FASTA)   NCBI Sequence Viewer  
  XP_030107546 (Get FASTA)   NCBI Sequence Viewer  
  XP_030107547 (Get FASTA)   NCBI Sequence Viewer  
  XP_030107548 (Get FASTA)   NCBI Sequence Viewer  
  XP_036018159 (Get FASTA)   NCBI Sequence Viewer  
  XP_036018160 (Get FASTA)   NCBI Sequence Viewer  
  XP_036018161 (Get FASTA)   NCBI Sequence Viewer  
  XP_036018162 (Get FASTA)   NCBI Sequence Viewer  
  XP_036018163 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAC52876 (Get FASTA)   NCBI Sequence Viewer  
  AAH35206 (Get FASTA)   NCBI Sequence Viewer  
  AAH79906 (Get FASTA)   NCBI Sequence Viewer  
  BAC26637 (Get FASTA)   NCBI Sequence Viewer  
  BAC29383 (Get FASTA)   NCBI Sequence Viewer  
  BAC32512 (Get FASTA)   NCBI Sequence Viewer  
  BAE21103 (Get FASTA)   NCBI Sequence Viewer  
  BAE28360 (Get FASTA)   NCBI Sequence Viewer  
  CAC94013 (Get FASTA)   NCBI Sequence Viewer  
  EDL28044 (Get FASTA)   NCBI Sequence Viewer  
  EDL28045 (Get FASTA)   NCBI Sequence Viewer  
  P70399 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_038763   ⟸   NM_013735
- Peptide Label: isoform a
- UniProtKB: P70399 (UniProtKB/Swiss-Prot),   Q3V1P7 (UniProtKB/TrEMBL),   Q8BZ87 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006499724   ⟸   XM_006499661
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_006499725   ⟸   XM_006499662
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_006499731   ⟸   XM_006499668
- Peptide Label: isoform X16
- Sequence:
RefSeq Acc Id: XP_011237886   ⟸   XM_011239584
- Peptide Label: isoform X8
- Sequence:
RefSeq Acc Id: XP_011237883   ⟸   XM_011239581
- Peptide Label: isoform X1
- UniProtKB: P70399 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001277759   ⟸   NM_001290830
- Peptide Label: isoform b
- UniProtKB: P70399 (UniProtKB/Swiss-Prot),   Q3V1P7 (UniProtKB/TrEMBL),   Q8BZ87 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011237884   ⟸   XM_011239582
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_011237885   ⟸   XM_011239583
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: XP_011237887   ⟸   XM_011239585
- Peptide Label: isoform X15
- Sequence:
RefSeq Acc Id: XP_017174426   ⟸   XM_017318937
- Peptide Label: isoform X11
- Sequence:
RefSeq Acc Id: XP_017174425   ⟸   XM_017318936
- Peptide Label: isoform X7
- Sequence:
RefSeq Acc Id: XP_030107546   ⟸   XM_030251686
- Peptide Label: isoform X1
RefSeq Acc Id: XP_030107545   ⟸   XM_030251685
- Peptide Label: isoform X1
RefSeq Acc Id: XP_030107547   ⟸   XM_030251687
- Peptide Label: isoform X12
RefSeq Acc Id: XP_030107548   ⟸   XM_030251688
- Peptide Label: isoform X14
RefSeq Acc Id: ENSMUSP00000122629   ⟸   ENSMUST00000124554
RefSeq Acc Id: ENSMUSP00000106277   ⟸   ENSMUST00000110647
RefSeq Acc Id: ENSMUSP00000106278   ⟸   ENSMUST00000110648
RefSeq Acc Id: ENSMUSP00000119793   ⟸   ENSMUST00000147540
RefSeq Acc Id: ENSMUSP00000114457   ⟸   ENSMUST00000131245
RefSeq Acc Id: ENSMUSP00000117548   ⟸   ENSMUST00000154426
RefSeq Acc Id: ENSMUSP00000120451   ⟸   ENSMUST00000129752
RefSeq Acc Id: ENSMUSP00000119425   ⟸   ENSMUST00000142400
RefSeq Acc Id: XP_036018163   ⟸   XM_036162270
- Peptide Label: isoform X13
RefSeq Acc Id: XP_036018159   ⟸   XM_036162266
- Peptide Label: isoform X5
RefSeq Acc Id: XP_036018160   ⟸   XM_036162267
- Peptide Label: isoform X9
RefSeq Acc Id: XP_036018161   ⟸   XM_036162268
- Peptide Label: isoform X10
RefSeq Acc Id: XP_036018162   ⟸   XM_036162269
- Peptide Label: isoform X12
Protein Domains
53-BP1_Tudor   BRCT

Promoters
RGD ID:6832983
Promoter ID:MM_KWN:31382
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain
Transcripts:OTTMUST00000038071
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv362121,030,006 - 121,030,506 (-)MPROMDB
RGD ID:6832984
Promoter ID:MM_KWN:31383
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain
Transcripts:OTTMUST00000061003
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv362121,033,206 - 121,033,706 (-)MPROMDB
RGD ID:6830622
Promoter ID:MM_KWN:31392
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_2Hour,   MEF_B4
Transcripts:ENSMUST00000037243,   ENSMUST00000110648,   OTTMUST00000038043,   OTTMUST00000038063,   UC008LYE.1,   UC008LYG.1,   UC008LYH.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv362121,096,881 - 121,097,381 (-)MPROMDB
RGD ID:6832985
Promoter ID:MM_KWN:31391
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain,   Kidney,   Liver,   Lung
Transcripts:ENSMUST00000064996,   ENSMUST00000065020,   ENSMUST00000110645,   OTTMUST00000038064,   UC008LYD.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv362121,096,936 - 121,097,436 (-)MPROMDB
RGD ID:6878462
Promoter ID:EPDNEW_M2682
Type:single initiation site
Name:Trp53bp1_2
Description:Mus musculus transformation related protein 53 binding protein1 , transcript variant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M2683  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm382121,211,972 - 121,212,032EPDNEW
RGD ID:6878504
Promoter ID:EPDNEW_M2683
Type:multiple initiation site
Name:Trp53bp1_1
Description:Mus musculus transformation related protein 53 binding protein1 , transcript variant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M2682  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm382121,271,379 - 121,271,439EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1351320 AgrOrtholog
Ensembl Genes ENSMUSG00000043909 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000106277 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUSP00000106278 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000114457 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUSP00000117548 UniProtKB/TrEMBL
  ENSMUSP00000119425 UniProtKB/TrEMBL
  ENSMUSP00000119793 UniProtKB/TrEMBL
  ENSMUSP00000120451 UniProtKB/TrEMBL
  ENSMUSP00000122629 UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000110647 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUST00000110648 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000124554 UniProtKB/TrEMBL
  ENSMUST00000129752 UniProtKB/TrEMBL
  ENSMUST00000131245 UniProtKB/TrEMBL
  ENSMUST00000142400 UniProtKB/TrEMBL
  ENSMUST00000147540 UniProtKB/TrEMBL
  ENSMUST00000154426 UniProtKB/TrEMBL
Gene3D-CATH 2.30.30.30 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.40.50.10190 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro 53-BP1_Tudor UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  BRCT_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  BRCT_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Rib_L2_dom2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Tudor UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:27223 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:1351320 ENTREZGENE
NCBI Gene 27223 ENTREZGENE
Pfam 53-BP1_Tudor UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Trp53bp1 PhenoGen
PROSITE BRCT UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART BRCT UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF52113 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A5H1ZRL7_MOUSE UniProtKB/TrEMBL
  A2AU90_MOUSE UniProtKB/TrEMBL
  F6QNC8_MOUSE UniProtKB/TrEMBL
  F6S5E4_MOUSE UniProtKB/TrEMBL
  F6VCK5_MOUSE UniProtKB/TrEMBL
  F6ZRL3_MOUSE UniProtKB/TrEMBL
  F7CE65_MOUSE UniProtKB/TrEMBL
  P70399 ENTREZGENE
  Q3UG49_MOUSE UniProtKB/TrEMBL
  Q3V1P7 ENTREZGENE, UniProtKB/TrEMBL
  Q8BLA0_MOUSE UniProtKB/TrEMBL
  Q8BZ87 ENTREZGENE, UniProtKB/TrEMBL
  Q8C0U1_MOUSE UniProtKB/TrEMBL
  TP53B_MOUSE UniProtKB/Swiss-Prot
UniProt Secondary A2AU89 UniProtKB/Swiss-Prot
  A2AU91 UniProtKB/Swiss-Prot
  Q68FD0 UniProtKB/Swiss-Prot
  Q8CI97 UniProtKB/Swiss-Prot
  Q91YC9 UniProtKB/Swiss-Prot