Slc35g3 (solute carrier family 35, member G3) - Rat Genome Database
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Gene: Slc35g3 (solute carrier family 35, member G3) Mus musculus
Analyze
Symbol: Slc35g3
Name: solute carrier family 35, member G3
RGD ID: 1317556
MGI Page MGI
Description: Orthologous to several human genes including SLC35G3 (solute carrier family 35 member G3) and SLC35G5 (solute carrier family 35 member G5); INTERACTS WITH 1,2-dichloroethane; benzo[a]pyrene; ethanol.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: acyl-malonyl condensing enzyme 1; acyl-malonyl-condensing enzyme 1; Ama; Amac1; solute carrier family 35 member G3; testicular condensing enzyme
RGD Orthologs
Human
Rat
Bonobo
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391169,650,710 - 69,652,670 (-)NCBIGRCm39mm39
GRCm39 Ensembl1169,650,716 - 69,652,794 (-)Ensembl
GRCm381169,759,884 - 69,761,844 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1169,759,890 - 69,761,968 (-)EnsemblGRCm38mm10GRCm38
MGSCv371169,573,386 - 69,575,346 (-)NCBIGRCm37mm9NCBIm37
MGSCv361169,576,099 - 69,578,039 (-)NCBImm8
MGSCv361170,344,011 - 70,345,951 (-)NCBImm8
Cytogenetic Map11B3NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

Additional References at PubMed
PMID:9056918   PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:16141072   PMID:16141073   PMID:18799693   PMID:21267068   PMID:21873635  


Genomics

Comparative Map Data
Slc35g3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391169,650,710 - 69,652,670 (-)NCBIGRCm39mm39
GRCm39 Ensembl1169,650,716 - 69,652,794 (-)Ensembl
GRCm381169,759,884 - 69,761,844 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1169,759,890 - 69,761,968 (-)EnsemblGRCm38mm10GRCm38
MGSCv371169,573,386 - 69,575,346 (-)NCBIGRCm37mm9NCBIm37
MGSCv361169,576,099 - 69,578,039 (-)NCBImm8
MGSCv361170,344,011 - 70,345,951 (-)NCBImm8
Cytogenetic Map11B3NCBI
SLC35G3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1735,192,520 - 35,194,523 (-)EnsemblGRCh38hg38GRCh38
GRCh381735,192,520 - 35,194,393 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh371733,519,539 - 33,521,412 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361730,543,652 - 30,545,490 (-)NCBINCBI36hg18NCBI36
Build 341730,543,651 - 30,545,490NCBI
Celera1730,429,712 - 30,431,585 (-)NCBI
Cytogenetic Map17q12NCBI
HuRef1729,704,161 - 29,706,034 (-)NCBIHuRef
CHM1_11733,583,887 - 33,585,760 (-)NCBICHM1_1
Slc35g3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21054,478,796 - 54,481,543 (-)NCBI
Rnor_6.0 Ensembl1056,366,609 - 56,368,360 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01056,366,578 - 56,368,360 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01056,111,978 - 56,113,760 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41056,580,455 - 56,582,237 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11056,594,344 - 56,595,881 (-)NCBI
Celera1053,634,063 - 53,635,845 (-)NCBICelera
Cytogenetic Map10q24NCBI
SLC35G3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11721,884,529 - 21,885,953 (+)NCBIpanpan1.1PanPan1.1panPan2
Mhudiblu_PPA_v01721,591,183 - 21,592,540 (+)NCBIMhudiblu_PPA_v0panPan3


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
26884453Sklq16_mskull length QTL 16, 16 week (mouse)11330000072800000Mouse
13208559Wght10_mweight 10 (mouse)11400000089000000Mouse
13208558Lgth12_mbody length 12 (mouse)11400000095000000Mouse
1300905Scc6_mcolon tumor susceptibility 6 (mouse)Not determined11693027789128908Mouse
1559002Lmrq4_mLeishmania major resistance QTL 4 (mouse)Not determined111231863769794121Mouse
1357859Lvrq7_mliver weight QTL 7 (mouse)Not determined1112318637118131898Mouse
39128214Lwq20_mliver weight QTL 20 (mouse)1112318637118131898Mouse
4141894Nidd6k_mNidd6 on KK-A (mouse)Not determined1917420497007000Mouse
10412246Dfs2_mdental fluorosis suseptibility 2 (mouse)Not determined112185736495990405Mouse
1357782Char8_mP. chabaudi malaria resistance QTL 8 (mouse)Not determined113568778969794161Mouse
13208569Bmiq10_mbody mass index QTL 10 (mouse)113600000085000000Mouse
1301328Mol4_mmodifier of LPS-response 4 (mouse)Not determined113639175083590530Mouse
1301788Lbw8_mlupus NZB x NZW 8 (mouse)Not determined113661246070618665Mouse
1301896Tria1_mT-cell receptor induced activation 1 (mouse)Not determined113672273870723028Mouse
4141853Skmw17_mskeletal muscle weight 17 (mouse)Not determined113719011571190238Mouse
10766457Nwa3_mNew Zealand White autoimmunity 3 (mouse)113812528972125383Mouse
11532698Sluc36a_msusceptibility to lung cancer 36a (mouse)114236579176365904Mouse
11532699Sluc36b_msusceptibility to lung cancer 36b (mouse)114236579176365904Mouse
4142300Ctrq3_mC. trachomatis resistance QTL 3 (mouse)Not determined114473921176963931Mouse
4141367Inf1_macute ozone induced inflammation (mouse)Not determined44739211113167183Mouse
4141000Nidd3_mnon-insulin-dependent diabetes mellitus 3 (mouse)Not determined4515120179151308Mouse
1302021Nidd1n_mnon-insulin-dependent diabetes mellitus 1 in NSY (mouse)Not determined114527504680087498Mouse
1357878Mastr_mmodifier of astrocytoma (mouse)Not determined114581775489927907Mouse
1300765Bbaa4_mB.burgdorferi-associated arthritis 4 (mouse)Not determined114629434180294436Mouse
1301988Bmd11_mbone mineral density 11 (mouse)Not determined114642858180428696Mouse
1301830Ssta4_msusceptibility to Salmonella typhimurium antigens 4 (mouse)Not determined115018736584187585Mouse
13524840Ppiq9a_mprepulse inhibition QTL 9a (mouse)115260355986603559Mouse
1300774Pgia7_mproteoglycan induced arthritis 7 (mouse)Not determined115349976287499911Mouse
4141830Pregq1_mpregnancy QTL 1 (mouse)Not determined115423592683842826Mouse
4141875Etax9_methanol induced ataxia 9 (mouse)Not determined5539415972319101Mouse
4142121Tmc1m2_mTmc1 modifier 2 (mouse)Not determined1156973201114267131Mouse
1300664Etohcta9_methanol conditioned taste aversion 9 (mouse)Not determined115786383491863932Mouse
10053682Eae45_mexperimental allergic encephalomyelitis susceptibility 45 (mouse)Not determined115859972974863932Mouse
1300924Ity2_mimmunity to S. typhimurium 2 (mouse)Not determined15861720487804412Mouse
4141982Skts-fp2_mskin tumor susceptibility in FVB and PWK 2 (mouse)Not determined5882844085175703Mouse
1301987Pid3_mprior incubation determinant 3 (mouse)Not determined116179599488808902Mouse
1301319Dautb4_mdopamine uptake transporter binding 4 (mouse)Not determined116226517996265327Mouse
27226730Tibmd1_mtibia midshaft diameter 1, 5 week (mouse)1162700000109500000Mouse
1301999Lmr15_mleishmaniasis resistance 15 (mouse)Not determined116342858181939647Mouse
10044004Stzid3_mstreptozotocin induced diabetes susceptibility 3 (mouse)Not determined116342858194173092Mouse
11039501Ltpr6a_mLeishmania tropica response 6a (mouse)116493951098939647Mouse
11039502Ltpr6b_mLeishmania tropica response 6b (mouse)116493951098939647Mouse
11039515Ltpr6_mLeishmania tropica response 6 (mouse)116493951098939647Mouse
1301546Pcir2_mperiosteal circumference 2 (mouse)Not determined1166842594100842826Mouse
1357766Si5lq6_mserum IGFBP-5 level QTL 6 (mouse)Not determined1166842594100842826Mouse
4141012Femwf6_mfemur work to failure 6 (mouse)Not determined66842594100842826Mouse
1301833Tbbmd5_mtotal body bone mineral density 5 (mouse)Not determined1166842594100842826Mouse
1300784Prdt3_mprion disease incubation time 3 (mouse)Not determined1166842594100842826Mouse
1300628Lgth6_mbody length 6 (mouse)Not determined1166842594100842826Mouse
4142316Ity2b_mimmunity to S. typhimurium 2b (mouse)Not determined116718736579923086Mouse
27226783Tibl5_mtibia length 5, 5 week (mouse)1168300000102000000Mouse
36049778Ars6_mantibody response to SARS-CoV 6, day 15, IgM (mouse)116910000072600000Mouse
36049779Ars7_mantibody response to SARS-CoV 7, day 29, IgG1 (mouse)116910000072600000Mouse
36049784Ars8_mantibody response to SARS-CoV 8, day 29, IgG2a+IgG2c (mouse)116910000072600000Mouse
36049785Ars9_mantibody response to SARS-CoV 9, day 29, IgM (mouse)116910000072600000Mouse
36049786Ars10_mantibody response to SARS-CoV 10, 4 days post-rechallenge, IgG2a+IgG2c (mouse)116910000072600000Mouse
36049787Ars11_mantibody response to SARS-CoV 11, 4 days post-rechallenge, IgM (mouse)116910000072600000Mouse
36049788Ars1_mantibody response to SARS-CoV 1, day 7, IgG1 (mouse)116910000072600000Mouse
36049789Ars2_mantibody response to SARS-CoV 2, day 7, IgG2a+IgG2c (mouse)116910000072600000Mouse
36049790Ars3_mantibody response to SARS-CoV 3, day 7, IgG2b (mouse)116910000072600000Mouse
36049791Ars4_mantibody response to SARS-CoV 4, day 7, IgG3 (mouse)116910000072600000Mouse
36049792Ars5_mantibody response to SARS-CoV 5, day 7, IgM (mouse)116910000072600000Mouse
35673314Ari2_mantibody response to influenza 2, day 10, IgG3 (mouse)116910000072600000Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:99
Count of miRNA genes:94
Interacting mature miRNAs:94
Transcripts:ENSMUST00000102586
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000102586   ⟹   ENSMUSP00000099646
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1169,759,890 - 69,761,968 (-)Ensembl
RefSeq Acc Id: ENSMUST00000231829   ⟹   ENSMUSP00000156297
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1169,759,890 - 69,761,844 (-)Ensembl
RefSeq Acc Id: NM_019871   ⟹   NP_063924
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391169,650,710 - 69,652,670 (-)NCBI
GRCm381169,759,884 - 69,761,844 (-)ENTREZGENE
MGSCv371169,573,386 - 69,575,346 (-)RGD
cM Map11 ENTREZGENE
Sequence:
Protein Sequences
Protein RefSeqs NP_063924 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAD11967 (Get FASTA)   NCBI Sequence Viewer  
  AAD26636 (Get FASTA)   NCBI Sequence Viewer  
  AAI37894 (Get FASTA)   NCBI Sequence Viewer  
  AAI37895 (Get FASTA)   NCBI Sequence Viewer  
  Q5F297 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_063924   ⟸   NM_019871
- UniProtKB: B2RQF0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000156297   ⟸   ENSMUST00000231829
RefSeq Acc Id: ENSMUSP00000099646   ⟸   ENSMUST00000102586
Protein Domains
EamA

Promoters
RGD ID:8675212
Promoter ID:EPDNEW_M15637
Type:initiation region
Name:Slc35g3_2
Description:Mus musculus solute carrier family 35, member G3 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M15638  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381169,761,691 - 69,761,751EPDNEW
RGD ID:8675214
Promoter ID:EPDNEW_M15638
Type:initiation region
Name:Slc35g3_1
Description:Mus musculus solute carrier family 35, member G3 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M15637  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381169,761,921 - 69,761,981EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1927128 AgrOrtholog
Ensembl Genes ENSMUSG00000018776 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000099646 UniProtKB/Swiss-Prot
  ENSMUSP00000156297 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000102586 UniProtKB/Swiss-Prot
  ENSMUST00000231829 ENTREZGENE, UniProtKB/TrEMBL
KEGG Report mmu:56293 UniProtKB/TrEMBL
MGD MGI:1927128 ENTREZGENE
NCBI Gene 56293 ENTREZGENE
PhenoGen Slc35g3 PhenoGen
UniProt B2RQF0 ENTREZGENE, UniProtKB/TrEMBL
  Q5F297 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary O35281 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-01-08 Slc35g3  solute carrier family 35, member G3  Amac1  acyl-malonyl condensing enzyme 1  Symbol and/or name change 5135510 APPROVED