Cpne5 (copine V) - Rat Genome Database

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Gene: Cpne5 (copine V) Mus musculus
Analyze
Symbol: Cpne5
Name: copine V
RGD ID: 1317549
MGI Page MGI
Description: Predicted to enable calcium-dependent phospholipid binding activity. Predicted to be involved in cellular response to calcium ion and positive regulation of dendrite extension. Predicted to act upstream of or within cell differentiation. Located in neuron projection and neuronal cell body. Is expressed in several structures, including brain; impulse conducting system; liver; male reproductive gland or organ; and sensory organ. Orthologous to human CPNE5 (copine 5).
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: A830083G22Rik; copine 5; copine-5; MGC47475
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391729,375,495 - 29,456,764 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1729,374,530 - 29,457,141 (-)EnsemblGRCm39 Ensembl
GRCm381729,156,521 - 29,237,790 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1729,155,556 - 29,238,167 (-)EnsemblGRCm38mm10GRCm38
MGSCv371729,293,466 - 29,374,735 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361728,883,833 - 28,964,802 (-)NCBIMGSCv36mm8
Celera1729,707,300 - 29,787,838 (-)NCBICelera
Cytogenetic Map17A3.3NCBI
cM Map1715.14NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. MGDs mouse GO annotations MGD data from the GO Consortium
2. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
3. Mouse MP Annotation Import Pipeline RGD automated import pipeline
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:9430674   PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12477932   PMID:14610273   PMID:15489334   PMID:16141072   PMID:16141073   PMID:18250453  
PMID:18614158   PMID:18799693   PMID:21873635   PMID:24154525   PMID:24194600   PMID:27568519   PMID:27626380   PMID:28168849   PMID:28634551   PMID:31284824   PMID:35951416   PMID:37060937  


Genomics

Comparative Map Data
Cpne5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391729,375,495 - 29,456,764 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1729,374,530 - 29,457,141 (-)EnsemblGRCm39 Ensembl
GRCm381729,156,521 - 29,237,790 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1729,155,556 - 29,238,167 (-)EnsemblGRCm38mm10GRCm38
MGSCv371729,293,466 - 29,374,735 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361728,883,833 - 28,964,802 (-)NCBIMGSCv36mm8
Celera1729,707,300 - 29,787,838 (-)NCBICelera
Cytogenetic Map17A3.3NCBI
cM Map1715.14NCBI
CPNE5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38636,740,775 - 36,839,998 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl636,740,775 - 36,839,444 (-)EnsemblGRCh38hg38GRCh38
GRCh37636,708,552 - 36,807,774 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36636,816,533 - 36,915,198 (-)NCBINCBI36Build 36hg18NCBI36
Build 34636,816,532 - 36,915,198NCBI
Celera638,263,598 - 38,362,252 (-)NCBICelera
Cytogenetic Map6p21.2NCBI
HuRef636,426,825 - 36,525,533 (-)NCBIHuRef
CHM1_1636,710,493 - 36,809,144 (-)NCBICHM1_1
T2T-CHM13v2.0636,561,362 - 36,660,596 (-)NCBIT2T-CHM13v2.0
Cpne5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8207,208,389 - 7,290,959 (-)NCBIGRCr8
mRatBN7.2207,206,742 - 7,289,309 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl207,206,742 - 7,288,883 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx207,917,922 - 7,999,959 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0207,279,786 - 7,361,822 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0207,754,579 - 7,836,796 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0206,419,033 - 6,500,843 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl206,419,033 - 6,500,523 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0208,664,244 - 8,745,448 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4207,453,643 - 7,535,366 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1207,455,846 - 7,535,503 (-)NCBI
Celera208,756,578 - 8,838,868 (-)NCBICelera
Cytogenetic Map20p12NCBI
Cpne5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554376,153,486 - 6,219,096 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554376,153,486 - 6,218,774 (+)NCBIChiLan1.0ChiLan1.0
CPNE5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2551,194,483 - 51,308,913 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1647,064,099 - 47,178,660 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0636,287,945 - 36,402,371 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1637,499,020 - 37,597,583 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl637,500,515 - 37,597,281 (-)Ensemblpanpan1.1panPan2
CPNE5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1125,812,460 - 5,902,467 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl125,811,503 - 5,910,343 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha125,831,510 - 5,921,508 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0126,161,527 - 6,251,534 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl126,161,527 - 6,251,474 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1125,816,127 - 5,906,521 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0125,895,662 - 5,985,995 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0125,993,806 - 6,084,221 (-)NCBIUU_Cfam_GSD_1.0
Cpne5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494641,286,989 - 41,376,974 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647622,584,131 - 22,673,264 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647622,584,837 - 22,673,143 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CPNE5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl732,409,688 - 32,508,380 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1732,396,735 - 32,510,242 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2737,301,474 - 37,412,793 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CPNE5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11735,296,046 - 35,392,450 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1735,296,196 - 35,390,970 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604436,687,767 - 36,784,175 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cpne5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475420,995,413 - 21,068,130 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475420,995,407 - 21,067,853 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Cpne5
3344 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:2085
Count of miRNA genes:743
Interacting mature miRNAs:972
Transcripts:ENSMUST00000024805, ENSMUST00000124917, ENSMUST00000126755, ENSMUST00000126993, ENSMUST00000137727
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
13524851Asrq8_macoustic startle response 8 (mouse)17131030170Mouse
10412276Leci2_mleukocyte endothelial cell interactions 2 (mouse)Not determined17334817537348299Mouse
1300890Bhr3_mbronchial hyperresponsiveness 3 (mouse)Not determined17397489048866091Mouse
4141215Mnic1_mmacronutrient intake, carbohydrate 1 (mouse)Not determined485475245670266Mouse
1300706Alan1_malloantigen response 1 (mouse)Not determined17485475246469702Mouse
1357789Kdnw3_mkidney weight 3 (mouse)Not determined17485475247885665Mouse
4141272Tfv1_mtotal food volume 1 (mouse)Not determined485475265637357Mouse
10043949Pbft7_mpercent body fat 7 (mouse)Not determined17689393640893936Mouse
4141608Phl1_mprogressive hearing loss 1 (mouse)Not determined17787584329487423Mouse
1301935Skull24_mskull morphology 24 (mouse)Not determined17858491442585149Mouse
1300787Cd8mts5_mCD8 memory T cell subset 5 (mouse)Not determined17858491442585149Mouse
1301338Lmr1_mleishmaniasis resistance 1 (mouse)Not determined171008134086996400Mouse
1302028Asbb3_mautoimmune susceptibility in C57BL/6J and BALB/c 3 (mouse)Not determined171087811944878219Mouse
4142342Lfnq4_mlung function QTL 4 (mouse)Not determined1120648439364059Mouse
4141067Hbnr2_mHeligmosomoides bakeri nematode resistance 2 (mouse)Not determined1188597145886119Mouse
14747010Mancz14_mmandible centroid size 14 (mouse)171199818445998184Mouse
4142150Stheal11_msoft tissue heal 11 (mouse)Not determined171228621183361768Mouse
12904946Tammq8_mtibialis anterior muscle mass QTL 8 (mouse)171245178746451787Mouse
13524847Asrq8a_macoustic startle response 8a (mouse)171264696146646961Mouse
11081168Tir7_mtrypanosome infection response 7 (mouse)171412337248123496Mouse
1300995Fembrs4_mfemur breaking strength 4 (mouse)Not determined171506165249061760Mouse
1300914Pcir4_mperiosteal circumference 4 (mouse)Not determined171506165249061760Mouse
1302070Tbbmd7_mtotal body bone mineral density 7 (mouse)Not determined171506165249061760Mouse
1558886Lgth9_mbody length 9 (mouse)Not determined171506165249061760Mouse
1302140Wta4_mweight adult 4 (mouse)Not determined171681972150819843Mouse
1302152Skull25_mskull morphology 25 (mouse)Not determined171681972150819843Mouse
1302038Radpf1_mradiation pulmonary fibrosis 1 (mouse)Not determined171683545533819843Mouse
10412083Sm2_msusceptibility to Schistosoma mansoni infection 2 (mouse)Not determined171702994351030078Mouse
13452396Leusq3_mleucocytosis susceptibility QTL 3 (mouse)171746220851462345Mouse
13452399Leusq6_mleucocytosis susceptibility QTL 6 (mouse)171746220851462345Mouse
10412214Sxbq3_mSGC/Knj cross B6 QTL 3 (mouse)Not determined171746220851462345Mouse
1300535Char3_mP. chabaudi malaria resistance QTL 3 (mouse)Not determined171746220851462345Mouse
1301840Ssial4_msusceptibility to sialadenitiss 4 (mouse)Not determined171817541252178214Mouse
1301331Lbw1_mlupus NZB x NZW 1 (mouse)Not determined171841835752420983Mouse
1301056Pas2_mpulmonary adenoma susceptibility 2 (mouse)Not determined171842214152424327Mouse
15039354Nmrs36_mNAFLD-associated magnetic resonance shift 36 (mouse)171914502553145025Mouse
1301454Eae5_msusceptibility to experimental allergic encephalomyelitis 5 (mouse)Not determined172461275058612864Mouse
10412198Sst5_msusceptibility to tuberculosis 5 (mouse)Not determined172507658355712970Mouse
10412196Bbaa28_mB.burgdorferi-associated arthritis 28 (mouse)Not determined172558491443976235Mouse
10412204Bbaa29_mB.burgdorferi-associated arthritis 29 (mouse)Not determined172605118560051352Mouse
1558758Kcal2_mkilocalorie 2 (mouse)Not determined172640101252911704Mouse
1300602Eye2_meye weight 2 (mouse)Not determined172650533741105037Mouse
12904013Cfq12_mconditioned fear QTL 12 (mouse)172682878130664955Mouse
1302005Loco2_mlocomotor activity 2 (mouse)Not determined172688497260885114Mouse
11075105Modc1_mmodifier of Odc1 (mouse)172771579245622654Mouse
15039348Nmrs37_mNAFLD-associated magnetic resonance shift 37 (mouse)172781520961815209Mouse
10045977Tir9_mtrypanosome infection response 9 (mouse)Not determined172787811943885114Mouse
1300703Uvbi2_mUVB induced immunosuppression 2 (mouse)Not determined172862240662622654Mouse

Markers in Region
D17Mit145  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381729,187,447 - 29,187,550UniSTSGRCm38
MGSCv371729,324,392 - 29,324,495UniSTSGRCm37
Celera1729,738,125 - 29,738,228UniSTS
Cytogenetic Map17A3.3UniSTS
cM Map1713.0UniSTS
Whitehead Genetic175.5UniSTS
Whitehead/MRC_RH17361.83UniSTS
BE110298  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381729,161,138 - 29,161,501UniSTSGRCm38
MGSCv371729,298,083 - 29,298,446UniSTSGRCm37
Celera1729,711,861 - 29,712,224UniSTS
Cytogenetic Map17A3.3UniSTS
px-50g7  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map3F1UniSTS
Cytogenetic Map7A3UniSTS
Cytogenetic Map7B5UniSTS
Cytogenetic Map13A3.2UniSTS
Cytogenetic Map2C2UniSTS
Cytogenetic Map3B-DUniSTS
Cytogenetic Map17B1UniSTS
Cytogenetic Map7A2UniSTS
Cytogenetic Map12EUniSTS
Cytogenetic Map4C6UniSTS
Cytogenetic Map4C1UniSTS
Cytogenetic Map18CUniSTS
Cytogenetic Map12C3UniSTS
Cytogenetic Map6G1UniSTS
Cytogenetic Map8A1.1UniSTS
Cytogenetic Map16A1UniSTS
Cytogenetic MapXDUniSTS
Cytogenetic Map2F2UniSTS
Cytogenetic Map17A3.3UniSTS
Cytogenetic Map1DUniSTS
Cytogenetic Map2G3UniSTS
Cytogenetic Map9A1UniSTS
Cytogenetic Map4A5UniSTS
Cytogenetic Map4D2.2UniSTS
cM Map74.0UniSTS
cM Map1718.88UniSTS
cM Map241.25UniSTS
cM Map727.0UniSTS
cM Map342.1UniSTS
cM Map275.0UniSTS
cM Map153.6UniSTS
cM Map91.0UniSTS
338D4-T7  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381729,189,938 - 29,190,094UniSTSGRCm38
MGSCv371729,326,883 - 29,327,039UniSTSGRCm37
Celera1729,740,616 - 29,740,773UniSTS
Cytogenetic Map17A3.3UniSTS
cM Map17 UniSTS
58C20-SP6  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381729,184,746 - 29,184,939UniSTSGRCm38
MGSCv371729,321,691 - 29,321,884UniSTSGRCm37
Celera1729,735,427 - 29,735,620UniSTS
Cytogenetic Map17A3.3UniSTS
cM Map17 UniSTS
Cpne5  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map17A3.3UniSTS
cM Map1715.14UniSTS


Expression


Sequence


RefSeq Acc Id: ENSMUST00000024805   ⟹   ENSMUSP00000024805
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1729,374,530 - 29,457,141 (-)Ensembl
GRCm38.p6 Ensembl1729,155,556 - 29,238,167 (-)Ensembl
RefSeq Acc Id: ENSMUST00000124917
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1729,381,241 - 29,395,630 (-)Ensembl
GRCm38.p6 Ensembl1729,162,267 - 29,176,656 (-)Ensembl
RefSeq Acc Id: ENSMUST00000126755
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1729,436,836 - 29,456,686 (-)Ensembl
GRCm38.p6 Ensembl1729,217,862 - 29,237,712 (-)Ensembl
RefSeq Acc Id: ENSMUST00000126993
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1729,376,890 - 29,403,077 (-)Ensembl
GRCm38.p6 Ensembl1729,157,916 - 29,184,103 (-)Ensembl
RefSeq Acc Id: ENSMUST00000137727   ⟹   ENSMUSP00000117982
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1729,388,417 - 29,456,903 (-)Ensembl
GRCm38.p6 Ensembl1729,169,443 - 29,237,929 (-)Ensembl
RefSeq Acc Id: ENSMUST00000234042
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1729,380,422 - 29,395,657 (-)Ensembl
GRCm38.p6 Ensembl1729,161,448 - 29,176,683 (-)Ensembl
RefSeq Acc Id: ENSMUST00000234157
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1729,378,008 - 29,378,479 (-)Ensembl
GRCm38.p6 Ensembl1729,159,034 - 29,159,505 (-)Ensembl
RefSeq Acc Id: NM_001360239   ⟹   NP_001347168
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391729,375,495 - 29,456,764 (-)NCBI
GRCm381729,156,521 - 29,237,790 (-)NCBI
Sequence:
RefSeq Acc Id: NM_153166   ⟹   NP_694806
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391729,375,495 - 29,456,764 (-)NCBI
GRCm381729,156,521 - 29,237,790 (-)NCBI
MGSCv371729,293,466 - 29,374,735 (-)RGD
Celera1729,707,300 - 29,787,838 (-)RGD
cM Map17 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006524251   ⟹   XP_006524314
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391729,376,882 - 29,429,158 (-)NCBI
GRCm381729,157,908 - 29,210,184 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017317468   ⟹   XP_017172957
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391729,376,882 - 29,386,457 (-)NCBI
GRCm381729,157,908 - 29,167,482 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017317469   ⟹   XP_017172958
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391729,376,882 - 29,396,889 (-)NCBI
GRCm381729,157,908 - 29,177,739 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036160602   ⟹   XP_036016495
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391729,376,882 - 29,456,607 (-)NCBI
Sequence:
RefSeq Acc Id: NP_694806   ⟸   NM_153166
- Peptide Label: isoform 2
- UniProtKB: Q8JZW4 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006524314   ⟸   XM_006524251
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_017172958   ⟸   XM_017317469
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_017172957   ⟸   XM_017317468
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: NP_001347168   ⟸   NM_001360239
- Peptide Label: isoform 1
RefSeq Acc Id: ENSMUSP00000117982   ⟸   ENSMUST00000137727
RefSeq Acc Id: ENSMUSP00000024805   ⟸   ENSMUST00000024805
RefSeq Acc Id: XP_036016495   ⟸   XM_036160602
- Peptide Label: isoform X1
Protein Domains
C2   VWFA

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8JZW4-F1-model_v2 AlphaFold Q8JZW4 1-593 view protein structure

Promoters
RGD ID:13675406
Promoter ID:EPDNEW_M21852
Type:multiple initiation site
Name:Cpne5_1
Description:Mus musculus copine V , transcript variant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381729,237,807 - 29,237,867EPDNEW
RGD ID:6848676
Promoter ID:MM_TRO:4280
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:ES_Cell
Transcripts:MTR007180.17.788.3
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361729,296,566 - 29,297,066 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2385908 AgrOrtholog
Ensembl Genes ENSMUSG00000024008 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000024805 ENTREZGENE
  ENSMUST00000024805.15 UniProtKB/Swiss-Prot
  ENSMUST00000126993 ENTREZGENE
  ENSMUST00000137727.3 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.150 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro C2_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  C2_domain_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  C2B_Copine UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Copine UniProtKB/Swiss-Prot
  Copine UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  VWF_A UniProtKB/Swiss-Prot
  vWFA_dom_sf UniProtKB/Swiss-Prot
KEGG Report mmu:240058 UniProtKB/Swiss-Prot
MGD MGI:2385908 ENTREZGENE
NCBI Gene 240058 ENTREZGENE
PANTHER COPINE-5 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR10857 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Copine UniProtKB/Swiss-Prot
  PF00168 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Cpne5 PhenoGen
PROSITE PS50004 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  VWFA UniProtKB/Swiss-Prot
SMART SM00239 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  VWA UniProtKB/Swiss-Prot
Superfamily-SCOP SSF49562 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF53300 UniProtKB/Swiss-Prot
UniProt CPNE5_MOUSE UniProtKB/Swiss-Prot
  E9Q1V2_MOUSE UniProtKB/TrEMBL
  Q8BVA1_MOUSE UniProtKB/TrEMBL
  Q8JZW4 ENTREZGENE