Plekhm1 (pleckstrin homology domain containing, family M (with RUN domain) member 1) - Rat Genome Database

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Gene: Plekhm1 (pleckstrin homology domain containing, family M (with RUN domain) member 1) Mus musculus
Analyze
Symbol: Plekhm1
Name: pleckstrin homology domain containing, family M (with RUN domain) member 1
RGD ID: 1317533
MGI Page MGI
Description: Predicted to enable metal ion binding activity. Involved in lysosome localization; positive regulation of bone resorption; and positive regulation of ruffle assembly. Predicted to be located in autolysosome and nucleolus. Used to study autosomal recessive osteopetrosis 6. Human ortholog(s) of this gene implicated in autosomal recessive osteopetrosis 6 and osteopetrosis. Orthologous to human PLEKHM1 (pleckstrin homology and RUN domain containing M1).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: AP1; AP162; B2; BC038943; D330036J23Rik; PH domain-containing family M member 1; pleckstrin homology domain-containing family M member 1
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3911103,255,101 - 103,303,531 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl11103,255,101 - 103,303,513 (-)EnsemblGRCm39 Ensembl
GRCm3811103,364,275 - 103,412,705 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl11103,364,275 - 103,412,687 (-)EnsemblGRCm38mm10GRCm38
MGSCv3711103,226,406 - 103,273,978 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3611103,181,182 - 103,228,754 (-)NCBIMGSCv36mm8
Celera11115,076,577 - 115,124,001 (-)NCBICelera
Cytogenetic Map11E1NCBI
cM Map1167.09NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
2. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
3. Mouse MP Annotation Import Pipeline RGD automated import pipeline
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
6. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10725249   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12520002   PMID:12904583   PMID:14610273   PMID:15747579   PMID:15782199   PMID:16141072  
PMID:16141073   PMID:17967808   PMID:18799693   PMID:22073305   PMID:25498145   PMID:25905573   PMID:25992615   PMID:26273529   PMID:27626380   PMID:27777970   PMID:32325033  


Genomics

Comparative Map Data
Plekhm1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3911103,255,101 - 103,303,531 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl11103,255,101 - 103,303,513 (-)EnsemblGRCm39 Ensembl
GRCm3811103,364,275 - 103,412,705 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl11103,364,275 - 103,412,687 (-)EnsemblGRCm38mm10GRCm38
MGSCv3711103,226,406 - 103,273,978 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3611103,181,182 - 103,228,754 (-)NCBIMGSCv36mm8
Celera11115,076,577 - 115,124,001 (-)NCBICelera
Cytogenetic Map11E1NCBI
cM Map1167.09NCBI
PLEKHM1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381745,434,209 - 45,490,721 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1745,435,900 - 45,490,758 (-)EnsemblGRCh38hg38GRCh38
GRCh371743,513,266 - 43,568,087 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361740,869,049 - 40,923,893 (-)NCBINCBI36Build 36hg18NCBI36
Build 341740,869,049 - 40,923,893NCBI
Celera1740,222,636 - 40,240,265 (-)NCBICelera
Cytogenetic Map17q21.31NCBI
HuRef1739,273,955 - 39,296,473 (-)NCBIHuRef
CHM1_11743,748,483 - 43,803,013 (-)NCBICHM1_1
T2T-CHM13v2.01746,286,496 - 46,344,437 (-)NCBIT2T-CHM13v2.0
Plekhm1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81088,814,699 - 88,876,570 (-)NCBIGRCr8
mRatBN7.21088,313,837 - 88,366,182 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1088,314,651 - 88,362,412 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1093,350,638 - 93,398,584 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01092,817,686 - 92,865,455 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01088,211,041 - 88,258,810 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01091,451,890 - 91,500,675 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1091,451,865 - 91,500,661 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01091,218,325 - 91,267,042 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41092,555,565 - 92,603,324 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11092,569,935 - 92,617,694 (-)NCBI
Celera1087,015,274 - 87,063,066 (-)NCBICelera
Cytogenetic Map10q32.1NCBI
Plekhm1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545118,043,194 - 18,079,873 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495545118,043,194 - 18,079,808 (-)NCBIChiLan1.0ChiLan1.0
PLEKHM1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21919,346,261 - 19,401,743 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11721,314,716 - 21,370,497 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01711,836,726 - 11,891,614 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11712,011,518 - 12,063,912 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1712,011,604 - 12,063,912 (+)Ensemblpanpan1.1panPan2
PLEKHM1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha911,333,769 - 11,374,929 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0918,791,160 - 18,837,560 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1910,919,802 - 10,960,705 (+)NCBIUMICH_Zoey_3.1
UU_Cfam_GSD_1.0918,009,047 - 18,050,225 (+)NCBIUU_Cfam_GSD_1.0
Plekhm1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560217,462,211 - 17,508,700 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365411,685,923 - 1,732,420 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365411,685,902 - 1,732,361 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PLEKHM1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1217,993,036 - 18,035,375 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11217,984,169 - 18,035,377 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21218,150,933 - 18,202,113 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PLEKHM1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11660,926,006 - 60,980,359 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1660,926,063 - 60,980,669 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607731,663,243 - 31,719,233 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Plekhm1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462479537,059 - 89,135 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462479537,059 - 86,568 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Plekhm1
1772 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1845
Count of miRNA genes:719
Interacting mature miRNAs:955
Transcripts:ENSMUST00000041272, ENSMUST00000184350
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
39128214Lwq20_mliver weight QTL 20 (mouse)1112268637118022724Mouse
4141367Inf1_macute ozone induced inflammation (mouse)Not determined44630038113058009Mouse
4142121Tmc1m2_mTmc1 modifier 2 (mouse)Not determined1156864027114157957Mouse
27226730Tibmd1_mtibia midshaft diameter 1, 5 week (mouse)1162590826109390826Mouse
1558812Rafar_mretinoic acid induced forelimb autopod reduction (mouse)Not determined1170691198104691366Mouse
1301681Sle13_msystematic lupus erythematosus susceptibility 13 (mouse)Not determined1170691198104691366Mouse
1300651Pcyts3_mplasmacytoma susceptibility 3 (mouse)Not determined1170691198104691366Mouse
4141339Nilac2_mnicotine induced locomotor activity 2 (mouse)Not determined1170691198104691366Mouse
1301404Sbmd4_mspinal bone mineral density 4 (mouse)Not determined1172019649106019734Mouse
1301310Tmevd5_mTheiler's murine encephalomyelitis virus induced demyelinating disease susceptibility 5 (mouse)Not determined1172726125106726289Mouse
4142348Pstc2_mperiosteal circumference 2 (mouse)Not determined1172818615106818733Mouse
10043866Adip19_madiposity 19 (mouse)Not determined1172818615106818733Mouse
11038695Par8_mpulmonary adenoma resistance 8 (mouse)1177063779111063918Mouse
1301414Heal10_mwound healing/regeneration 10 (mouse)Not determined1177437183111437322Mouse
10045616Heal25_mwound healing/regeneration 25 (mouse)Not determined1177437183111437322Mouse
10413882Moe1_mmodifier of epilepsy 1 (mouse)1177770978111771099Mouse
1301640Lore4_mloss of righting induced by ethanol 4 (mouse)Not determined1179156009107616472Mouse
14746970Manh71_mmandible shape 71 (mouse)1179416257113416257Mouse
10043865T2dm5sa_mtype 2 diabetes mellitus 5 in SMXA RI mice (mouse)Not determined1179813759104502698Mouse
1300649Crhq1_mcompensatory renal hypertrophy QTL 1 (mouse)Not determined1181574481115574636Mouse
1300766Skull16_mskull morphology 16 (mouse)Not determined1181574481115574636Mouse
10412288Carg4_mCandida albicans resistance gene 4 (mouse)Not determined1181810267115810267Mouse
1301072Eae22_mexperimental allergic encephalomyelitis 22 (mouse)Not determined1182377698116377820Mouse
14747003Mancz9_mmandible centroid size 9 (mouse)1185844911119844911Mouse
15039374Adip29_madiposity 29 (mouse)1186608320120608320Mouse
15039376Bw42_mbody weight QTL 42 (mouse)1186608320120608320Mouse
15014785Mvlq1_mmacrovesicular liver lesion QTL 1 (mouse)1186608320120608320Mouse
27226789Feml16_mfemur length 16, 10 week (mouse)1187490826121873369Mouse
10044007Hbnr14_mHeligmosomoides bakeri nematode resistance 14 (mouse)Not determined1187502600121502698Mouse
1357631Motr1_mmodifier of tubby retinal degeneration 1 (mouse)Not determined1187691198103274115Mouse
11251723Ewc5_methanol withdrawal and consumption 5 (mouse)1189869251121973369Mouse
1558753Ath19_matherosclerosis 19 (mouse)Not determined1191604608121973369Mouse
1302034Pkccl_mprotein kinase C content in lungs (mouse)Not determined1191604608121973369Mouse
10045617Heal26_mwound healing/regeneration 26 (mouse)Not determined1192939373112544554Mouse
1301095El6_mepilepsy 6 (mouse)Not determined1193229183121973369Mouse
4141939Pregq2_mpregnancy QTL 2 (mouse)Not determined1194063779118022724Mouse
27226731Tibmd4_mtibia midshaft diameter 4, 10 week (mouse)1194190826118890826Mouse
4141465Dbm2_mdiabetes modifier 2 (mouse)Not determined94437183118022724Mouse
1301958Alcp18_malcohol preference locus 18 (mouse)Not determined1195403965121973369Mouse
1300944Alcp20_malcohol preference locus 20 (mouse)Not determined1195403965121973369Mouse
1300962Cd8mts4_mCD8 memory T cell subset 4 (mouse)Not determined1196137674121973369Mouse
1301535Pas5b_mpulmonary adenoma susceptibility 5b (mouse)Not determined1196176465108806384Mouse
1301057Nidd4_mnon-insulin-dependent diabetes mellitus 4 (mouse)Not determined1196810136121973369Mouse
12910539Sstapa3_msuseptibility to Staphylococcus aureus infection 3 (mouse)1196897693110603991Mouse
1301983Berr2_mberghei resistance locus 2 (mouse)Not determined1198352609121973369Mouse
10043976Obq33_mobesity QTL 33 (mouse)Not determined1198500469121973369Mouse
10044001Alcw8_malcohol withdrawal 8 (mouse)Not determined1199254187121973369Mouse
11553867Stmm5_mskin tumor modifier of MSM 5 (mouse)11100058103121973369Mouse
11341721Rvfs2_mRift Valley fever susceptibility 2 (mouse)11100254186120887165Mouse
1301012Vispl_mvisual placing (mouse)Not determined11101022590121973369Mouse
14700693Ppiq12_mprepulse inhibition QTL 12 (mouse)11101504820114472363Mouse
14700694Ppiq13_mprepulse inhibition QTL 13 (mouse)11101504820114472363Mouse
14700695Ppiq14_mprepulse inhibition QTL 14 (mouse)11101504820114472363Mouse
14700696Ppiq15_mprepulse inhibition QTL 15 (mouse)11101504820114472363Mouse
1300957Pbd1_mpeak bone density 1 (mouse)Not determined11102344123112384123Mouse
4141612Cia40_mcollagen induced arthritis 40 (mouse)Not determined11103273992115021444Mouse

Markers in Region
D11Mit360  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3811103,383,166 - 103,383,289UniSTSGRCm38
MGSCv3711103,244,480 - 103,244,603UniSTSGRCm37
Celera11115,094,653 - 115,094,754UniSTS
Cytogenetic Map11E1UniSTS
cM Map1164.0UniSTS
Whitehead Genetic1164.5UniSTS
Whitehead/MRC_RH111401.67UniSTS
Whitehead_YAC11 UniSTS
UniSTS:236754  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3811103,365,745 - 103,365,970UniSTSGRCm38
MGSCv3711103,227,059 - 103,227,284UniSTSGRCm37
Celera11115,077,230 - 115,077,455UniSTS
Cytogenetic Map11E1UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_183034 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AK048562 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK154703 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK155357 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK157752 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK181665 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK183705 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK189128 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK190944 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK193700 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK194666 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK196505 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK196588 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK197598 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK200989 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK201014 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK201821 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK210293 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK212548 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK214417 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK216022 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK216813 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK217464 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK218682 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL772325 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL929552 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC038943 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC053079 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BP767414 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY203268 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSMUST00000041272   ⟹   ENSMUSP00000047327
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl11103,255,101 - 103,303,513 (-)Ensembl
GRCm38.p6 Ensembl11103,364,275 - 103,412,687 (-)Ensembl
RefSeq Acc Id: ENSMUST00000184350   ⟹   ENSMUSP00000138878
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl11103,257,443 - 103,285,594 (-)Ensembl
GRCm38.p6 Ensembl11103,366,617 - 103,394,768 (-)Ensembl
RefSeq Acc Id: NM_183034   ⟹   NP_898855
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3911103,255,101 - 103,303,531 (-)NCBI
GRCm3811103,364,275 - 103,412,705 (-)NCBI
MGSCv3711103,226,406 - 103,273,978 (-)RGD
Celera11115,076,577 - 115,124,001 (-)RGD
cM Map11 ENTREZGENE
Sequence:
Protein Sequences
Protein RefSeqs NP_898855 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH38943 (Get FASTA)   NCBI Sequence Viewer  
  AAH53079 (Get FASTA)   NCBI Sequence Viewer  
  BAE32773 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000047327
  ENSMUSP00000047327.9
  ENSMUSP00000138878.2
GenBank Protein Q7TSI1 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_898855   ⟸   NM_183034
- UniProtKB: Q3U3L2 (UniProtKB/Swiss-Prot),   Q8CHU5 (UniProtKB/Swiss-Prot),   Q7TSI1 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSMUSP00000138878   ⟸   ENSMUST00000184350
RefSeq Acc Id: ENSMUSP00000047327   ⟸   ENSMUST00000041272
Protein Domains
PH   RUN

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q7TSI1-F1-model_v2 AlphaFold Q7TSI1 1-1074 view protein structure

Promoters
RGD ID:6846886
Promoter ID:MM_ACW:9051
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour
Transcripts:PLEKHM1.CSEP07,   PLEKHM1.DSEP07
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv3611103,264,979 - 103,265,479 (-)MPROMDB
RGD ID:6821572
Promoter ID:MM_KWN:10075
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:OTTMUST00000005762
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv3611103,273,801 - 103,274,301 (-)MPROMDB
RGD ID:8676976
Promoter ID:EPDNEW_M16518
Type:initiation region
Name:Plekhm1_2
Description:Mus musculus pleckstrin homology domain containing, family Mmember 1 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M16519  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3811103,403,912 - 103,403,972EPDNEW
RGD ID:8676978
Promoter ID:EPDNEW_M16519
Type:initiation region
Name:Plekhm1_1
Description:Mus musculus pleckstrin homology domain containing, family Mmember 1 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M16518  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3811103,412,691 - 103,412,751EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2443207 AgrOrtholog
Ensembl Genes ENSMUSG00000034247 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000041272 ENTREZGENE
  ENSMUST00000041272.10 UniProtKB/Swiss-Prot
  ENSMUST00000184350.2 UniProtKB/TrEMBL
Gene3D-CATH 1.20.58.900 UniProtKB/Swiss-Prot
  2.30.29.30 UniProtKB/Swiss-Prot
InterPro PE/DAG-bd UniProtKB/Swiss-Prot
  PH-like_dom_sf UniProtKB/Swiss-Prot
  PH_domain UniProtKB/Swiss-Prot
  PLEKHM1_PH UniProtKB/Swiss-Prot
  Run_dom UniProtKB/Swiss-Prot
  Run_dom_sf UniProtKB/Swiss-Prot
  RUN_PLEKHM1 UniProtKB/Swiss-Prot
  Zf-RING_9 UniProtKB/Swiss-Prot
KEGG Report mmu:353047 UniProtKB/Swiss-Prot
MGD MGI:2443207 ENTREZGENE
NCBI Gene 353047 ENTREZGENE
PANTHER PLECKSTRIN HOMOLOGY DOMAIN CONTAINING PROTEIN UniProtKB/Swiss-Prot
  PLECKSTRIN HOMOLOGY DOMAIN-CONTAINING FAMILY M MEMBER 1 UniProtKB/Swiss-Prot
Pfam RUN UniProtKB/Swiss-Prot
  zf-RING_9 UniProtKB/Swiss-Prot
PhenoGen Plekhm1 PhenoGen
PROSITE PH_DOMAIN UniProtKB/Swiss-Prot
  RUN UniProtKB/Swiss-Prot
  ZF_DAG_PE_2 UniProtKB/Swiss-Prot
SMART DUF4206 UniProtKB/Swiss-Prot
  RUN UniProtKB/Swiss-Prot
  SM00109 UniProtKB/Swiss-Prot
  SM00233 UniProtKB/Swiss-Prot
Superfamily-SCOP PH domain-like UniProtKB/Swiss-Prot
  SSF140741 UniProtKB/Swiss-Prot
UniProt PKHM1_MOUSE UniProtKB/Swiss-Prot
  Q3U3L2 ENTREZGENE
  Q7TSI1 ENTREZGENE
  Q8CHU5 ENTREZGENE
  V9GWX7_MOUSE UniProtKB/TrEMBL
UniProt Secondary Q3U3L2 UniProtKB/Swiss-Prot
  Q8CHU5 UniProtKB/Swiss-Prot