PHC3 (polyhomeotic homolog 3) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: PHC3 (polyhomeotic homolog 3) Homo sapiens
Analyze
Symbol: PHC3
Name: polyhomeotic homolog 3
RGD ID: 1317513
HGNC Page HGNC:15682
Description: Predicted to enable chromatin binding activity and histone binding activity. Predicted to be involved in negative regulation of DNA-templated transcription. Located in nucleoplasm. Part of PRC1 complex.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: DKFZp313K1221; early development regulator 3; early development regulatory protein 3; EDR3; FLJ12729; FLJ12967; homolog of polyhomeotic 3; HPH3; MGC88144; polyhomeotic like 3; polyhomeotic like 3 (drosophila); polyhomeotic-like protein 3
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383170,087,584 - 170,181,733 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3170,086,732 - 170,181,749 (-)EnsemblGRCh38hg38GRCh38
GRCh373169,805,372 - 169,899,521 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 363171,288,062 - 171,382,231 (-)NCBINCBI36Build 36hg18NCBI36
Build 343171,297,359 - 171,382,218NCBI
Celera3168,204,684 - 168,298,819 (-)NCBICelera
Cytogenetic Map3q26.2NCBI
HuRef3167,175,971 - 167,270,090 (-)NCBIHuRef
CHM1_13169,768,808 - 169,862,971 (-)NCBICHM1_1
T2T-CHM13v2.03172,872,255 - 172,966,417 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nucleoplasm  (IDA,TAS)
nucleus  (IBA,IDA,IEA)
PcG protein complex  (IDA,IEA)
PRC1 complex  (IBA,IDA,IEA)
protein-containing complex  (IEA)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. PRC1 complex diversity: where is it taking us? Gil J and O'Loghlen A, Trends Cell Biol. 2014 Jul 22. pii: S0962-8924(14)00102-0. doi: 10.1016/j.tcb.2014.06.005.
2. GOAs Human GO annotations GOA_HUMAN data from the GO Consortium
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
4. Occupying chromatin: Polycomb mechanisms for getting to genomic targets, stopping transcriptional traffic, and staying put. Simon JA and Kingston RE, Mol Cell. 2013 Mar 7;49(5):808-24. doi: 10.1016/j.molcel.2013.02.013.
Additional References at PubMed
PMID:12167701   PMID:12384788   PMID:12477932   PMID:14702039   PMID:15174051   PMID:15302935   PMID:15342556   PMID:15489334   PMID:16565220   PMID:17001316   PMID:17081983   PMID:18029348  
PMID:19636380   PMID:20491773   PMID:20850016   PMID:21282530   PMID:21873635   PMID:22325352   PMID:22724443   PMID:23667531   PMID:23942079   PMID:24457600   PMID:24981860   PMID:25416956  
PMID:26186194   PMID:26343356   PMID:26496610   PMID:26841866   PMID:27705803   PMID:28481362   PMID:28514442   PMID:29117863   PMID:29507755   PMID:29509190   PMID:30021884   PMID:30554943  
PMID:30804502   PMID:31527615   PMID:32296183   PMID:32513696   PMID:33916271   PMID:33961781   PMID:34079125   PMID:34316702   PMID:35044719   PMID:35140242   PMID:35831314   PMID:36089195  
PMID:36244648   PMID:36373674   PMID:37468993   PMID:37689310   PMID:37827155  


Genomics

Comparative Map Data
PHC3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383170,087,584 - 170,181,733 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3170,086,732 - 170,181,749 (-)EnsemblGRCh38hg38GRCh38
GRCh373169,805,372 - 169,899,521 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 363171,288,062 - 171,382,231 (-)NCBINCBI36Build 36hg18NCBI36
Build 343171,297,359 - 171,382,218NCBI
Celera3168,204,684 - 168,298,819 (-)NCBICelera
Cytogenetic Map3q26.2NCBI
HuRef3167,175,971 - 167,270,090 (-)NCBIHuRef
CHM1_13169,768,808 - 169,862,971 (-)NCBICHM1_1
T2T-CHM13v2.03172,872,255 - 172,966,417 (-)NCBIT2T-CHM13v2.0
Phc3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39330,953,444 - 31,023,628 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl330,953,520 - 31,023,564 (-)EnsemblGRCm39 Ensembl
GRCm38330,899,295 - 30,969,479 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl330,899,371 - 30,969,415 (-)EnsemblGRCm38mm10GRCm38
MGSCv37330,798,217 - 30,868,337 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36331,097,687 - 31,160,279 (-)NCBIMGSCv36mm8
Celera330,811,260 - 30,881,515 (-)NCBICelera
Cytogenetic Map3A3NCBI
cM Map314.36NCBI
Phc3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82114,337,180 - 114,412,132 (+)NCBIGRCr8
mRatBN7.22112,408,709 - 112,483,719 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2112,408,531 - 112,476,540 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2119,066,709 - 119,130,894 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02117,179,274 - 117,243,458 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02111,882,251 - 111,946,375 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02116,028,735 - 116,103,227 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2116,028,781 - 116,096,045 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02135,723,966 - 135,798,433 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42116,831,190 - 116,895,396 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12116,772,507 - 116,840,332 (+)NCBI
Celera2107,599,159 - 107,663,187 (+)NCBICelera
Cytogenetic Map2q24NCBI
Phc3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955420329,215 - 403,168 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955420329,215 - 403,191 (-)NCBIChiLan1.0ChiLan1.0
PHC3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22167,980,926 - 168,075,166 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan13167,985,650 - 168,079,877 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v03167,100,797 - 167,194,987 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13175,291,594 - 175,384,905 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3175,291,594 - 175,384,905 (-)Ensemblpanpan1.1panPan2
PHC3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13434,651,828 - 34,739,613 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3434,668,040 - 34,739,882 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3443,665,363 - 43,752,722 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03434,733,032 - 34,820,084 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3434,744,357 - 34,820,676 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13434,678,961 - 34,765,867 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03434,646,521 - 34,733,841 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03434,910,864 - 34,997,759 (-)NCBIUU_Cfam_GSD_1.0
Phc3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405602101,283,888 - 101,358,093 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365932,263,829 - 2,336,856 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365932,263,892 - 2,336,856 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PHC3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl13108,776,220 - 108,883,572 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.113108,791,675 - 108,883,620 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.213117,553,499 - 117,628,878 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PHC3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11519,214,818 - 19,308,248 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1519,217,677 - 19,293,583 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606328,013,543 - 28,108,102 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Phc3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473048,153,414 - 48,238,279 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473048,144,767 - 48,258,807 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in PHC3
31 total Variants

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 3q24-26.32(chr3:147442566-178522531)x3 copy number gain See cases [RCV000051724] Chr3:147442566..178522531 [GRCh38]
Chr3:147160353..178240319 [GRCh37]
Chr3:148643043..179723013 [NCBI36]
Chr3:3q24-26.32
pathogenic
GRCh38/hg38 3q24-29(chr3:147521892-198096565)x3 copy number gain See cases [RCV000051725] Chr3:147521892..198096565 [GRCh38]
Chr3:147239679..197823436 [GRCh37]
Chr3:148722369..199307833 [NCBI36]
Chr3:3q24-29
pathogenic
GRCh38/hg38 3q25.31-29(chr3:157293378-198134727)x3 copy number gain See cases [RCV000051726] Chr3:157293378..198134727 [GRCh38]
Chr3:157011167..197861598 [GRCh37]
Chr3:158493861..199345995 [NCBI36]
Chr3:3q25.31-29
pathogenic
GRCh38/hg38 3q25.32-26.31(chr3:158141556-172788324)x3 copy number gain See cases [RCV000051735] Chr3:158141556..172788324 [GRCh38]
Chr3:157859345..172506114 [GRCh37]
Chr3:159342039..173988808 [NCBI36]
Chr3:3q25.32-26.31
pathogenic
GRCh38/hg38 3q22.3-29(chr3:137126982-198110178)x3 copy number gain Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000051723]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000051723]|See cases [RCV000051723] Chr3:137126982..198110178 [GRCh38]
Chr3:136845824..197837049 [GRCh37]
Chr3:138328514..199321446 [NCBI36]
Chr3:3q22.3-29
pathogenic
GRCh38/hg38 3q13.11-29(chr3:103426882-198110178)x3 copy number gain See cases [RCV000134948] Chr3:103426882..198110178 [GRCh38]
Chr3:103145726..197837049 [GRCh37]
Chr3:104628416..199321446 [NCBI36]
Chr3:3q13.11-29
pathogenic
GRCh38/hg38 3q26.2-29(chr3:168167568-198110178)x3 copy number gain See cases [RCV000137106] Chr3:168167568..198110178 [GRCh38]
Chr3:167885356..197837049 [GRCh37]
Chr3:169368050..199321446 [NCBI36]
Chr3:3q26.2-29
pathogenic
GRCh38/hg38 3q26.1-26.2(chr3:166831737-170631211)x3 copy number gain See cases [RCV000136642] Chr3:166831737..170631211 [GRCh38]
Chr3:166549525..170349000 [GRCh37]
Chr3:168032219..171831694 [NCBI36]
Chr3:3q26.1-26.2
uncertain significance
GRCh38/hg38 3q26.1-26.33(chr3:165158611-180130168)x3 copy number gain See cases [RCV000139359] Chr3:165158611..180130168 [GRCh38]
Chr3:164876399..179847956 [GRCh37]
Chr3:166359093..181330650 [NCBI36]
Chr3:3q26.1-26.33
pathogenic
GRCh38/hg38 3q25.1-29(chr3:152100512-198118383)x3 copy number gain See cases [RCV000139435] Chr3:152100512..198118383 [GRCh38]
Chr3:151818301..197845254 [GRCh37]
Chr3:153300991..199329651 [NCBI36]
Chr3:3q25.1-29
pathogenic
GRCh38/hg38 3q25.31-29(chr3:156321878-198113452)x3 copy number gain See cases [RCV000140849] Chr3:156321878..198113452 [GRCh38]
Chr3:156039667..197840323 [GRCh37]
Chr3:157522361..199324720 [NCBI36]
Chr3:3q25.31-29
pathogenic
GRCh38/hg38 3q25.31-29(chr3:156118441-198125115)x3 copy number gain See cases [RCV000142310] Chr3:156118441..198125115 [GRCh38]
Chr3:155836230..197851986 [GRCh37]
Chr3:157318924..199336383 [NCBI36]
Chr3:3q25.31-29
pathogenic
GRCh38/hg38 3q26.1-28(chr3:167717962-188365272)x3 copy number gain See cases [RCV000142107] Chr3:167717962..188365272 [GRCh38]
Chr3:167435750..188083060 [GRCh37]
Chr3:168918444..189565754 [NCBI36]
Chr3:3q26.1-28
likely pathogenic
GRCh38/hg38 3q26.1-29(chr3:166137209-198125115)x3 copy number gain See cases [RCV000143694] Chr3:166137209..198125115 [GRCh38]
Chr3:165854997..197851986 [GRCh37]
Chr3:167337691..199336383 [NCBI36]
Chr3:3q26.1-29
pathogenic
GRCh37/hg19 3q24-29(chr3:142995020-192997215)x4 copy number gain See cases [RCV000240256] Chr3:142995020..192997215 [GRCh37]
Chr3:3q24-29
pathogenic
GRCh37/hg19 3q25.32-29(chr3:158980631-197766890)x3 copy number gain See cases [RCV000447464] Chr3:158980631..197766890 [GRCh37]
Chr3:3q25.32-29
pathogenic
GRCh37/hg19 3q25.32-26.33(chr3:157128738-181637333)x3 copy number gain See cases [RCV000446611] Chr3:157128738..181637333 [GRCh37]
Chr3:3q25.32-26.33
pathogenic
GRCh37/hg19 3q25.2-29(chr3:152356847-197851986)x3 copy number gain See cases [RCV000448608] Chr3:152356847..197851986 [GRCh37]
Chr3:3q25.2-29
pathogenic
GRCh37/hg19 3p26.3-q29(chr3:61892-197851986)x3 copy number gain See cases [RCV000511055] Chr3:61892..197851986 [GRCh37]
Chr3:3p26.3-q29
pathogenic
GRCh37/hg19 3p26.3-q29(chr3:61892-197851986) copy number gain See cases [RCV000512358] Chr3:61892..197851986 [GRCh37]
Chr3:3p26.3-q29
pathogenic
NM_024947.4(PHC3):c.2083A>T (p.Ser695Cys) single nucleotide variant Inborn genetic diseases [RCV003241287] Chr3:170117336 [GRCh38]
Chr3:169835124 [GRCh37]
Chr3:3q26.2
uncertain significance
NM_024947.4(PHC3):c.1213C>G (p.Gln405Glu) single nucleotide variant Inborn genetic diseases [RCV003245451] Chr3:170129259 [GRCh38]
Chr3:169847047 [GRCh37]
Chr3:3q26.2
uncertain significance
GRCh37/hg19 3p26.3-q29(chr3:61495-197838262)x3 copy number gain not provided [RCV000742138] Chr3:61495..197838262 [GRCh37]
Chr3:3p26.3-q29
pathogenic
GRCh37/hg19 3p26.3-q29(chr3:60174-197948027)x3 copy number gain not provided [RCV000742133] Chr3:60174..197948027 [GRCh37]
Chr3:3p26.3-q29
pathogenic
NM_024947.4(PHC3):c.2356A>G (p.Thr786Ala) single nucleotide variant Inborn genetic diseases [RCV003275880] Chr3:170106944 [GRCh38]
Chr3:169824732 [GRCh37]
Chr3:3q26.2
uncertain significance
GRCh37/hg19 3q13.31-26.31(chr3:116620308-172042292)x3 copy number gain not provided [RCV002472621] Chr3:116620308..172042292 [GRCh37]
Chr3:3q13.31-26.31
pathogenic
GRCh37/hg19 3q26.2-28(chr3:169617690-190593854)x3 copy number gain not provided [RCV001005487] Chr3:169617690..190593854 [GRCh37]
Chr3:3q26.2-28
pathogenic
GRCh37/hg19 3q26.2-26.33(chr3:168118411-179867071)x3 copy number gain not provided [RCV001827868] Chr3:168118411..179867071 [GRCh37]
Chr3:3q26.2-26.33
likely pathogenic
GRCh37/hg19 3q25.32-26.33(chr3:157128738-181637333) copy number gain not specified [RCV002053382] Chr3:157128738..181637333 [GRCh37]
Chr3:3q25.32-26.33
pathogenic
GRCh37/hg19 3q26.2(chr3:169894343-169959222)x1 copy number loss not provided [RCV001827643] Chr3:169894343..169959222 [GRCh37]
Chr3:3q26.2
uncertain significance
NC_000003.11:g.(?_169482388)_(170130102_?)dup duplication Dyskeratosis congenita, autosomal dominant 1 [RCV001917616] Chr3:169482388..170130102 [GRCh37]
Chr3:3q26.2
uncertain significance
NC_000003.11:g.(?_168802697)_(172835521_?)dup duplication Fanconi-Bickel syndrome [RCV003111067] Chr3:168802697..172835521 [GRCh37]
Chr3:3q26.2-26.31
uncertain significance
NM_024947.4(PHC3):c.2710C>T (p.Arg904Cys) single nucleotide variant Inborn genetic diseases [RCV003261665] Chr3:170102602 [GRCh38]
Chr3:169820390 [GRCh37]
Chr3:3q26.2
uncertain significance
NM_024947.4(PHC3):c.1492C>T (p.His498Tyr) single nucleotide variant Inborn genetic diseases [RCV002753002] Chr3:170128980 [GRCh38]
Chr3:169846768 [GRCh37]
Chr3:3q26.2
uncertain significance
NM_024947.4(PHC3):c.1042C>G (p.Pro348Ala) single nucleotide variant Inborn genetic diseases [RCV002752903] Chr3:170129430 [GRCh38]
Chr3:169847218 [GRCh37]
Chr3:3q26.2
uncertain significance
NM_024947.4(PHC3):c.2521C>T (p.Pro841Ser) single nucleotide variant Inborn genetic diseases [RCV002687618] Chr3:170102882 [GRCh38]
Chr3:169820670 [GRCh37]
Chr3:3q26.2
uncertain significance
NM_024947.4(PHC3):c.2075C>A (p.Ser692Tyr) single nucleotide variant Inborn genetic diseases [RCV002992904] Chr3:170117344 [GRCh38]
Chr3:169835132 [GRCh37]
Chr3:3q26.2
uncertain significance
NM_024947.4(PHC3):c.1339A>G (p.Asn447Asp) single nucleotide variant Inborn genetic diseases [RCV002728506] Chr3:170129133 [GRCh38]
Chr3:169846921 [GRCh37]
Chr3:3q26.2
uncertain significance
NM_024947.4(PHC3):c.2496T>G (p.Phe832Leu) single nucleotide variant Inborn genetic diseases [RCV002946363] Chr3:170102907 [GRCh38]
Chr3:169820695 [GRCh37]
Chr3:3q26.2
uncertain significance
NM_024947.4(PHC3):c.1994C>G (p.Ser665Cys) single nucleotide variant Inborn genetic diseases [RCV002845766] Chr3:170117425 [GRCh38]
Chr3:169835213 [GRCh37]
Chr3:3q26.2
uncertain significance
NM_024947.4(PHC3):c.2122A>G (p.Ile708Val) single nucleotide variant Inborn genetic diseases [RCV002987575] Chr3:170117297 [GRCh38]
Chr3:169835085 [GRCh37]
Chr3:3q26.2
uncertain significance
NM_024947.4(PHC3):c.1337C>G (p.Pro446Arg) single nucleotide variant Inborn genetic diseases [RCV002742688] Chr3:170129135 [GRCh38]
Chr3:169846923 [GRCh37]
Chr3:3q26.2
uncertain significance
NM_024947.4(PHC3):c.1190C>G (p.Ser397Cys) single nucleotide variant Inborn genetic diseases [RCV002892207] Chr3:170129282 [GRCh38]
Chr3:169847070 [GRCh37]
Chr3:3q26.2
uncertain significance
NM_024947.4(PHC3):c.1561C>T (p.Pro521Ser) single nucleotide variant Inborn genetic diseases [RCV002812231] Chr3:170128911 [GRCh38]
Chr3:169846699 [GRCh37]
Chr3:3q26.2
uncertain significance
NM_024947.4(PHC3):c.799T>G (p.Ser267Ala) single nucleotide variant Inborn genetic diseases [RCV002813210] Chr3:170136539 [GRCh38]
Chr3:169854327 [GRCh37]
Chr3:3q26.2
uncertain significance
NM_024947.4(PHC3):c.1045A>G (p.Ile349Val) single nucleotide variant Inborn genetic diseases [RCV002769648] Chr3:170129427 [GRCh38]
Chr3:169847215 [GRCh37]
Chr3:3q26.2
uncertain significance
NM_024947.4(PHC3):c.437C>T (p.Thr146Ile) single nucleotide variant Inborn genetic diseases [RCV002939359] Chr3:170149222 [GRCh38]
Chr3:169867010 [GRCh37]
Chr3:3q26.2
uncertain significance
NM_024947.4(PHC3):c.1531A>G (p.Ile511Val) single nucleotide variant Inborn genetic diseases [RCV002964908] Chr3:170128941 [GRCh38]
Chr3:169846729 [GRCh37]
Chr3:3q26.2
uncertain significance
NM_024947.4(PHC3):c.1532T>C (p.Ile511Thr) single nucleotide variant Inborn genetic diseases [RCV002878028] Chr3:170128940 [GRCh38]
Chr3:169846728 [GRCh37]
Chr3:3q26.2
uncertain significance
NM_024947.4(PHC3):c.164A>G (p.Asp55Gly) single nucleotide variant Inborn genetic diseases [RCV002960761] Chr3:170178789 [GRCh38]
Chr3:169896577 [GRCh37]
Chr3:3q26.2
uncertain significance
NM_024947.4(PHC3):c.691C>T (p.Arg231Cys) single nucleotide variant Inborn genetic diseases [RCV002725106] Chr3:170136647 [GRCh38]
Chr3:169854435 [GRCh37]
Chr3:3q26.2
uncertain significance
NM_024947.4(PHC3):c.2129A>C (p.Lys710Thr) single nucleotide variant Inborn genetic diseases [RCV003214903] Chr3:170117290 [GRCh38]
Chr3:169835078 [GRCh37]
Chr3:3q26.2
uncertain significance
NM_024947.4(PHC3):c.1459G>A (p.Val487Ile) single nucleotide variant Inborn genetic diseases [RCV003287988] Chr3:170129013 [GRCh38]
Chr3:169846801 [GRCh37]
Chr3:3q26.2
uncertain significance
NM_024947.4(PHC3):c.2644C>T (p.His882Tyr) single nucleotide variant Inborn genetic diseases [RCV003359030] Chr3:170102668 [GRCh38]
Chr3:169820456 [GRCh37]
Chr3:3q26.2
uncertain significance
NM_024947.4(PHC3):c.966G>C (p.Gln322His) single nucleotide variant Inborn genetic diseases [RCV003344785] Chr3:170129506 [GRCh38]
Chr3:169847294 [GRCh37]
Chr3:3q26.2
uncertain significance
NM_024947.4(PHC3):c.1463C>G (p.Ser488Cys) single nucleotide variant Inborn genetic diseases [RCV003384879] Chr3:170129009 [GRCh38]
Chr3:169846797 [GRCh37]
Chr3:3q26.2
uncertain significance
NM_024947.4(PHC3):c.2546G>A (p.Arg849His) single nucleotide variant Inborn genetic diseases [RCV003363361] Chr3:170102857 [GRCh38]
Chr3:169820645 [GRCh37]
Chr3:3q26.2
uncertain significance
NM_024947.4(PHC3):c.1157C>T (p.Pro386Leu) single nucleotide variant Inborn genetic diseases [RCV003386748] Chr3:170129315 [GRCh38]
Chr3:169847103 [GRCh37]
Chr3:3q26.2
uncertain significance
NM_024947.4(PHC3):c.2877T>C (p.Asp959=) single nucleotide variant not provided [RCV003434791] Chr3:170097341 [GRCh38]
Chr3:169815129 [GRCh37]
Chr3:3q26.2
likely benign
Single allele duplication not provided [RCV003448680] Chr3:140154329..197847235 [GRCh37]
Chr3:3q23-29
pathogenic
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:7346
Count of miRNA genes:1466
Interacting mature miRNAs:1995
Transcripts:ENST00000465896, ENST00000466189, ENST00000467570, ENST00000472330, ENST00000474275, ENST00000475729, ENST00000479467, ENST00000481639, ENST00000484068, ENST00000484931, ENST00000486042, ENST00000490723, ENST00000491258, ENST00000494943, ENST00000495893, ENST00000497171, ENST00000497658
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Markers in Region
RH36479  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh373169,849,814 - 169,849,945UniSTSGRCh37
Build 363171,332,508 - 171,332,639RGDNCBI36
Celera3168,249,132 - 168,249,263RGD
Cytogenetic Map3q26.2UniSTS
HuRef3167,220,345 - 167,220,476UniSTS
GeneMap99-GB4 RH Map3628.46UniSTS
NCBI RH Map31496.8UniSTS
SHGC-133019  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh373169,818,491 - 169,818,774UniSTSGRCh37
Build 363171,301,185 - 171,301,468RGDNCBI36
Celera3168,217,807 - 168,218,090RGD
Cytogenetic Map3q26.2UniSTS
HuRef3167,189,104 - 167,189,387UniSTS
TNG Radiation Hybrid Map337605.0UniSTS
STS-N62444  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh373169,847,886 - 169,848,129UniSTSGRCh37
Build 363171,330,580 - 171,330,823RGDNCBI36
Celera3168,247,205 - 168,247,448RGD
Cytogenetic Map3q26.2UniSTS
HuRef3167,218,417 - 167,218,660UniSTS
TNG Radiation Hybrid Map326321.0UniSTS
GeneMap99-GB4 RH Map3628.46UniSTS
NCBI RH Map31496.8UniSTS
STS-Z40983  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh373169,805,472 - 169,805,561UniSTSGRCh37
Build 363171,288,166 - 171,288,255RGDNCBI36
Celera3168,204,788 - 168,204,877RGD
Cytogenetic Map3q26.2UniSTS
HuRef3167,176,075 - 167,176,164UniSTS
GeneMap99-GB4 RH Map3628.46UniSTS
NCBI RH Map31496.8UniSTS
RH48268  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh373169,853,277 - 169,853,403UniSTSGRCh37
Build 363171,335,971 - 171,336,097RGDNCBI36
Celera3168,252,595 - 168,252,721RGD
Cytogenetic Map3q26.2UniSTS
HuRef3167,223,808 - 167,223,934UniSTS
GeneMap99-GB4 RH Map3628.46UniSTS
NCBI RH Map31496.8UniSTS
SHGC-59931  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh373169,818,532 - 169,818,704UniSTSGRCh37
Build 363171,301,226 - 171,301,398RGDNCBI36
Celera3168,217,848 - 168,218,020RGD
Cytogenetic Map3q26.2UniSTS
HuRef3167,189,145 - 167,189,317UniSTS
SHGC-60175  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh373169,818,490 - 169,818,704UniSTSGRCh37
Build 363171,301,184 - 171,301,398RGDNCBI36
Celera3168,217,806 - 168,218,020RGD
Cytogenetic Map3q26.2UniSTS
HuRef3167,189,103 - 167,189,317UniSTS
PHC3_3678  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh373169,814,535 - 169,815,091UniSTSGRCh37
Build 363171,297,229 - 171,297,785RGDNCBI36
Celera3168,213,851 - 168,214,407RGD
HuRef3167,185,148 - 167,185,704UniSTS
D10S2448  
Human AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map1p36.32UniSTS
Cytogenetic Map11p14.1UniSTS
Cytogenetic Map3q21.3UniSTS
Cytogenetic MapXp11.23UniSTS
Cytogenetic Map4q12UniSTS
Cytogenetic Map13q12.3UniSTS
Cytogenetic Map6q25.1UniSTS
Cytogenetic Map3q26.2UniSTS
Cytogenetic Map9q34.3UniSTS
Cytogenetic Map1p22.1UniSTS
Cytogenetic Map12q22UniSTS
Cytogenetic Map1p36.1UniSTS
Cytogenetic Map1p35.1UniSTS
Cytogenetic Map6p23UniSTS
Cytogenetic Map5p13.2UniSTS
Cytogenetic Map2q33.2UniSTS
Cytogenetic Map13q32.1UniSTS
Cytogenetic Map22q12.2UniSTS
Cytogenetic Map4p15.31UniSTS
Cytogenetic Map1q22UniSTS
Cytogenetic Map12q13.3UniSTS
Cytogenetic Map17p13.1UniSTS
Cytogenetic Map1p31UniSTS
Cytogenetic Map19q13UniSTS
Cytogenetic MapXq13-q21UniSTS
Cytogenetic Map16p11.2UniSTS
Cytogenetic Map17q12UniSTS
Cytogenetic Map6p12.1UniSTS
Cytogenetic Map9q33.3UniSTS
Cytogenetic Map13q34UniSTS
Cytogenetic Map15q15UniSTS
Cytogenetic Map1q44UniSTS
Cytogenetic Map3q23UniSTS
Cytogenetic Map4q31.21UniSTS
Cytogenetic Map2p23.3UniSTS
Cytogenetic Map2q31.1UniSTS
Cytogenetic Map19q13.32UniSTS
Cytogenetic Map12q14.3UniSTS
Cytogenetic Map22q11.21UniSTS
Cytogenetic Map1p36.11UniSTS
Cytogenetic Map19p13.2UniSTS
Cytogenetic Map1q21UniSTS
Cytogenetic Map4q22UniSTS
Cytogenetic Map17p13.3UniSTS
Cytogenetic Map19qUniSTS
Cytogenetic Map2q32.3UniSTS
D8S2282  
Human AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map2q32.3UniSTS
Cytogenetic Map4p13UniSTS
Cytogenetic Map3q21.3UniSTS
Cytogenetic MapXp11.23UniSTS
Cytogenetic Map8q24.13UniSTS
Cytogenetic Map19q13.1UniSTS
Cytogenetic Map19q13.32UniSTS
Cytogenetic Map17q25.1UniSTS
Cytogenetic Map3q26.2UniSTS
Cytogenetic Map13q12.11UniSTS
Cytogenetic Map15q24.1UniSTS
Cytogenetic Map9q21.32UniSTS
Cytogenetic Map1p35.1UniSTS
Cytogenetic MapXq25-q26.1UniSTS
Cytogenetic Map2p25-p24UniSTS
Cytogenetic Map11q13UniSTS
Cytogenetic Map19q13.4UniSTS
Cytogenetic Map2p21UniSTS
Cytogenetic Map19p13.2UniSTS
Cytogenetic Map2p16.1UniSTS
Cytogenetic Map5q33.2UniSTS
Cytogenetic Map4p15.31UniSTS
Cytogenetic Map5q32UniSTS
Cytogenetic Map12q13.13UniSTS
Cytogenetic Map3p21UniSTS
Cytogenetic Map2p11.2UniSTS
Cytogenetic Map1p31.1UniSTS
Cytogenetic Map1p34UniSTS
Cytogenetic Map2p15UniSTS
Cytogenetic Map17q12UniSTS
Cytogenetic Map13q34UniSTS
Cytogenetic Map3q23UniSTS
Cytogenetic Map9q21.11UniSTS
Cytogenetic Map12q14.3UniSTS
Cytogenetic Map1q21.3UniSTS
Cytogenetic Map19q13.31UniSTS
Cytogenetic Map3q29UniSTS
Cytogenetic Map11p14.1UniSTS
Cytogenetic Map4p16.3UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system visual system adipose tissue appendage entire extraembryonic component pharyngeal arch
High
Medium 942 949 490 71 685 32 1787 538 746 127 613 984 55 1 478 1233 5 2
Low 1497 1996 1234 551 1250 431 2570 1629 2954 291 847 629 120 726 1555 1
Below cutoff 46 2 2 16 2 30 34 1

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001308116 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_024947 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005247789 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005247791 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005247793 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006713753 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006713754 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006713756 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006713757 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011513186 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011513187 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011513188 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011513189 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017007235 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017007236 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017007237 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017007238 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017007239 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047448982 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047448983 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047448984 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047448986 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047448987 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047448988 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047448989 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047448990 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047448991 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054347942 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054347943 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054347944 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054347945 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054347946 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054347947 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054347948 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054347949 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054347950 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054347951 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054347952 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054347953 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054347954 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054347955 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054347956 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054347957 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054347958 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054347959 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054347960 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054347961 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054347962 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054347963 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001740274 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001740275 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_241509 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_924181 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC008040 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC023891 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF380154 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF444193 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AI042019 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ320486 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK022791 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK023029 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK300151 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK304411 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC022325 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC026001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC070164 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC112944 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC131772 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC131773 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BP200133 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BX647868 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471052 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CP068275 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  EF560717 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENST00000465896
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl3170,150,607 - 170,181,736 (-)Ensembl
RefSeq Acc Id: ENST00000466189   ⟹   ENSP00000417860
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl3170,136,534 - 170,181,749 (-)Ensembl
RefSeq Acc Id: ENST00000467570   ⟹   ENSP00000419089
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl3170,102,567 - 170,181,749 (-)Ensembl
RefSeq Acc Id: ENST00000472330   ⟹   ENSP00000420713
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl3170,149,134 - 170,181,723 (-)Ensembl
RefSeq Acc Id: ENST00000474275
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl3170,147,248 - 170,181,728 (-)Ensembl
RefSeq Acc Id: ENST00000475729   ⟹   ENSP00000419899
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl3170,136,596 - 170,181,745 (-)Ensembl
RefSeq Acc Id: ENST00000479467   ⟹   ENSP00000417633
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl3170,136,366 - 170,181,747 (-)Ensembl
RefSeq Acc Id: ENST00000481639   ⟹   ENSP00000417540
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl3170,170,732 - 170,181,747 (-)Ensembl
RefSeq Acc Id: ENST00000484068   ⟹   ENSP00000418835
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl3170,086,732 - 170,102,899 (-)Ensembl
RefSeq Acc Id: ENST00000484931   ⟹   ENSP00000418039
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl3170,129,308 - 170,181,730 (-)Ensembl
RefSeq Acc Id: ENST00000486042   ⟹   ENSP00000417360
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl3170,117,123 - 170,128,807 (-)Ensembl
RefSeq Acc Id: ENST00000490723
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl3170,171,263 - 170,172,632 (-)Ensembl
RefSeq Acc Id: ENST00000491258
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl3170,171,086 - 170,181,733 (-)Ensembl
RefSeq Acc Id: ENST00000494943   ⟹   ENSP00000420271
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl3170,095,221 - 170,181,733 (-)Ensembl
RefSeq Acc Id: ENST00000495893   ⟹   ENSP00000420294
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl3170,087,584 - 170,181,733 (-)Ensembl
RefSeq Acc Id: ENST00000497171
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl3170,129,385 - 170,136,670 (-)Ensembl
RefSeq Acc Id: ENST00000497658   ⟹   ENSP00000420454
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl3170,169,718 - 170,181,733 (-)Ensembl
RefSeq Acc Id: NM_001308116   ⟹   NP_001295045
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh383170,087,584 - 170,181,733 (-)NCBI
CHM1_13169,768,808 - 169,862,971 (-)NCBI
T2T-CHM13v2.03172,872,255 - 172,966,417 (-)NCBI
Sequence:
RefSeq Acc Id: NM_024947   ⟹   NP_079223
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh383170,087,584 - 170,181,733 (-)NCBI
GRCh373169,805,368 - 169,899,537 (-)RGD
GRCh373169,805,368 - 169,899,537 (-)NCBI
Build 363171,288,062 - 171,382,231 (-)NCBI Archive
Celera3168,204,684 - 168,298,819 (-)RGD
HuRef3167,175,971 - 167,270,090 (-)ENTREZGENE
CHM1_13169,768,808 - 169,862,971 (-)NCBI
T2T-CHM13v2.03172,872,255 - 172,966,417 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005247789   ⟹   XP_005247846
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh383170,087,584 - 170,181,733 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005247791   ⟹   XP_005247848
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh383170,102,479 - 170,181,733 (-)NCBI
GRCh373169,805,368 - 169,899,537 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005247793   ⟹   XP_005247850
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh383170,125,984 - 170,181,733 (-)NCBI
GRCh373169,805,368 - 169,899,537 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006713753   ⟹   XP_006713816
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh383170,087,584 - 170,181,733 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006713754   ⟹   XP_006713817
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh383170,087,584 - 170,181,733 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006713756   ⟹   XP_006713819
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh383170,087,584 - 170,181,733 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006713757   ⟹   XP_006713820
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh383170,128,334 - 170,181,733 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011513188   ⟹   XP_011511490
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh383170,087,584 - 170,181,733 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011513189   ⟹   XP_011511491
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh383170,102,526 - 170,181,733 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017007235   ⟹   XP_016862724
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh383170,087,584 - 170,181,733 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017007237   ⟹   XP_016862726
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh383170,087,584 - 170,181,733 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017007238   ⟹   XP_016862727
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh383170,087,584 - 170,181,733 (-)NCBI
Sequence:
RefSeq Acc Id: XM_047448982   ⟹   XP_047304938
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh383170,087,584 - 170,180,974 (-)NCBI
RefSeq Acc Id: XM_047448983   ⟹   XP_047304939
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh383170,087,584 - 170,181,733 (-)NCBI
RefSeq Acc Id: XM_047448984   ⟹   XP_047304940
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh383170,087,584 - 170,181,733 (-)NCBI
RefSeq Acc Id: XM_047448986   ⟹   XP_047304942
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh383170,087,584 - 170,181,733 (-)NCBI
RefSeq Acc Id: XM_047448987   ⟹   XP_047304943
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh383170,087,584 - 170,181,733 (-)NCBI
RefSeq Acc Id: XM_047448988   ⟹   XP_047304944
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh383170,087,584 - 170,181,733 (-)NCBI
RefSeq Acc Id: XM_047448989   ⟹   XP_047304945
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh383170,102,479 - 170,181,733 (-)NCBI
RefSeq Acc Id: XM_047448990   ⟹   XP_047304946
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh383170,102,479 - 170,181,733 (-)NCBI
RefSeq Acc Id: XM_047448991   ⟹   XP_047304947
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh383170,128,334 - 170,181,733 (-)NCBI
RefSeq Acc Id: XM_054347942   ⟹   XP_054203917
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.03172,872,255 - 172,966,417 (-)NCBI
RefSeq Acc Id: XM_054347943   ⟹   XP_054203918
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.03172,872,255 - 172,966,417 (-)NCBI
RefSeq Acc Id: XM_054347944   ⟹   XP_054203919
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.03172,872,255 - 172,966,417 (-)NCBI
RefSeq Acc Id: XM_054347945   ⟹   XP_054203920
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.03172,872,255 - 172,966,333 (-)NCBI
RefSeq Acc Id: XM_054347946   ⟹   XP_054203921
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.03172,872,255 - 172,965,658 (-)NCBI
RefSeq Acc Id: XM_054347947   ⟹   XP_054203922
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.03172,872,255 - 172,966,417 (-)NCBI
RefSeq Acc Id: XM_054347948   ⟹   XP_054203923
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.03172,872,255 - 172,966,417 (-)NCBI
RefSeq Acc Id: XM_054347949   ⟹   XP_054203924
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.03172,872,255 - 172,966,417 (-)NCBI
RefSeq Acc Id: XM_054347950   ⟹   XP_054203925
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.03172,872,255 - 172,966,417 (-)NCBI
RefSeq Acc Id: XM_054347951   ⟹   XP_054203926
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.03172,872,255 - 172,966,417 (-)NCBI
RefSeq Acc Id: XM_054347952   ⟹   XP_054203927
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.03172,872,255 - 172,966,417 (-)NCBI
RefSeq Acc Id: XM_054347953   ⟹   XP_054203928
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.03172,872,255 - 172,966,417 (-)NCBI
RefSeq Acc Id: XM_054347954   ⟹   XP_054203929
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.03172,872,255 - 172,966,417 (-)NCBI
RefSeq Acc Id: XM_054347955   ⟹   XP_054203930
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.03172,872,255 - 172,966,417 (-)NCBI
RefSeq Acc Id: XM_054347956   ⟹   XP_054203931
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.03172,887,149 - 172,966,417 (-)NCBI
RefSeq Acc Id: XM_054347957   ⟹   XP_054203932
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.03172,887,149 - 172,966,417 (-)NCBI
RefSeq Acc Id: XM_054347958   ⟹   XP_054203933
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.03172,872,255 - 172,947,740 (-)NCBI
RefSeq Acc Id: XM_054347959   ⟹   XP_054203934
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.03172,887,196 - 172,966,417 (-)NCBI
RefSeq Acc Id: XM_054347960   ⟹   XP_054203935
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.03172,887,149 - 172,966,417 (-)NCBI
RefSeq Acc Id: XM_054347961   ⟹   XP_054203936
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.03172,910,658 - 172,966,417 (-)NCBI
RefSeq Acc Id: XM_054347962   ⟹   XP_054203937
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.03172,913,010 - 172,966,417 (-)NCBI
RefSeq Acc Id: XM_054347963   ⟹   XP_054203938
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.03172,913,010 - 172,966,417 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001295045 (Get FASTA)   NCBI Sequence Viewer  
  NP_079223 (Get FASTA)   NCBI Sequence Viewer  
  XP_005247846 (Get FASTA)   NCBI Sequence Viewer  
  XP_005247848 (Get FASTA)   NCBI Sequence Viewer  
  XP_005247850 (Get FASTA)   NCBI Sequence Viewer  
  XP_006713816 (Get FASTA)   NCBI Sequence Viewer  
  XP_006713817 (Get FASTA)   NCBI Sequence Viewer  
  XP_006713819 (Get FASTA)   NCBI Sequence Viewer  
  XP_006713820 (Get FASTA)   NCBI Sequence Viewer  
  XP_011511490 (Get FASTA)   NCBI Sequence Viewer  
  XP_011511491 (Get FASTA)   NCBI Sequence Viewer  
  XP_016862724 (Get FASTA)   NCBI Sequence Viewer  
  XP_016862726 (Get FASTA)   NCBI Sequence Viewer  
  XP_016862727 (Get FASTA)   NCBI Sequence Viewer  
  XP_047304938 (Get FASTA)   NCBI Sequence Viewer  
  XP_047304939 (Get FASTA)   NCBI Sequence Viewer  
  XP_047304940 (Get FASTA)   NCBI Sequence Viewer  
  XP_047304942 (Get FASTA)   NCBI Sequence Viewer  
  XP_047304943 (Get FASTA)   NCBI Sequence Viewer  
  XP_047304944 (Get FASTA)   NCBI Sequence Viewer  
  XP_047304945 (Get FASTA)   NCBI Sequence Viewer  
  XP_047304946 (Get FASTA)   NCBI Sequence Viewer  
  XP_047304947 (Get FASTA)   NCBI Sequence Viewer  
  XP_054203917 (Get FASTA)   NCBI Sequence Viewer  
  XP_054203918 (Get FASTA)   NCBI Sequence Viewer  
  XP_054203919 (Get FASTA)   NCBI Sequence Viewer  
  XP_054203920 (Get FASTA)   NCBI Sequence Viewer  
  XP_054203921 (Get FASTA)   NCBI Sequence Viewer  
  XP_054203922 (Get FASTA)   NCBI Sequence Viewer  
  XP_054203923 (Get FASTA)   NCBI Sequence Viewer  
  XP_054203924 (Get FASTA)   NCBI Sequence Viewer  
  XP_054203925 (Get FASTA)   NCBI Sequence Viewer  
  XP_054203926 (Get FASTA)   NCBI Sequence Viewer  
  XP_054203927 (Get FASTA)   NCBI Sequence Viewer  
  XP_054203928 (Get FASTA)   NCBI Sequence Viewer  
  XP_054203929 (Get FASTA)   NCBI Sequence Viewer  
  XP_054203930 (Get FASTA)   NCBI Sequence Viewer  
  XP_054203931 (Get FASTA)   NCBI Sequence Viewer  
  XP_054203932 (Get FASTA)   NCBI Sequence Viewer  
  XP_054203933 (Get FASTA)   NCBI Sequence Viewer  
  XP_054203934 (Get FASTA)   NCBI Sequence Viewer  
  XP_054203935 (Get FASTA)   NCBI Sequence Viewer  
  XP_054203936 (Get FASTA)   NCBI Sequence Viewer  
  XP_054203937 (Get FASTA)   NCBI Sequence Viewer  
  XP_054203938 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH22325 (Get FASTA)   NCBI Sequence Viewer  
  AAH70164 (Get FASTA)   NCBI Sequence Viewer  
  AAI31773 (Get FASTA)   NCBI Sequence Viewer  
  AAM46139 (Get FASTA)   NCBI Sequence Viewer  
  AAM51781 (Get FASTA)   NCBI Sequence Viewer  
  ABQ59027 (Get FASTA)   NCBI Sequence Viewer  
  BAB14245 (Get FASTA)   NCBI Sequence Viewer  
  BAB14365 (Get FASTA)   NCBI Sequence Viewer  
  BAG61936 (Get FASTA)   NCBI Sequence Viewer  
  BAG65243 (Get FASTA)   NCBI Sequence Viewer  
  CAC86587 (Get FASTA)   NCBI Sequence Viewer  
  CAI46090 (Get FASTA)   NCBI Sequence Viewer  
  EAW78516 (Get FASTA)   NCBI Sequence Viewer  
  EAW78517 (Get FASTA)   NCBI Sequence Viewer  
  EAW78518 (Get FASTA)   NCBI Sequence Viewer  
  EAW78519 (Get FASTA)   NCBI Sequence Viewer  
  EAW78520 (Get FASTA)   NCBI Sequence Viewer  
  EAW78521 (Get FASTA)   NCBI Sequence Viewer  
  EAW78522 (Get FASTA)   NCBI Sequence Viewer  
  EAW78523 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSP00000417360.1
  ENSP00000417540.1
  ENSP00000417633.1
  ENSP00000417860.1
  ENSP00000418039.1
  ENSP00000418835.1
  ENSP00000419089
  ENSP00000419089.1
  ENSP00000419899.1
  ENSP00000420271
  ENSP00000420271.1
  ENSP00000420294
  ENSP00000420294.1
  ENSP00000420454.1
  ENSP00000420713.1
GenBank Protein Q8NDX5 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_079223   ⟸   NM_024947
- Peptide Label: isoform 1
- UniProtKB: A5YM43 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005247846   ⟸   XM_005247789
- Peptide Label: isoform X1
- UniProtKB: A5YM43 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005247848   ⟸   XM_005247791
- Peptide Label: isoform X13
- UniProtKB: B4E2T1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005247850   ⟸   XM_005247793
- Peptide Label: isoform X17
- Sequence:
RefSeq Acc Id: XP_006713819   ⟸   XM_006713756
- Peptide Label: isoform X9
- UniProtKB: A5YM43 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006713816   ⟸   XM_006713753
- Peptide Label: isoform X3
- UniProtKB: A5YM43 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006713817   ⟸   XM_006713754
- Peptide Label: isoform X3
- UniProtKB: A5YM43 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006713820   ⟸   XM_006713757
- Peptide Label: isoform X18
- Sequence:
RefSeq Acc Id: XP_011511490   ⟸   XM_011513188
- Peptide Label: isoform X5
- UniProtKB: A5YM43 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011511491   ⟸   XM_011513189
- Peptide Label: isoform X15
- UniProtKB: E7EX82 (UniProtKB/TrEMBL),   B4E2T1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001295045   ⟸   NM_001308116
- Peptide Label: isoform 2
- UniProtKB: Q9H971 (UniProtKB/Swiss-Prot),   Q8TBM2 (UniProtKB/Swiss-Prot),   Q8NFZ1 (UniProtKB/Swiss-Prot),   Q8NFT7 (UniProtKB/Swiss-Prot),   Q6NSG2 (UniProtKB/Swiss-Prot),   Q5HYF0 (UniProtKB/Swiss-Prot),   A2RRP9 (UniProtKB/Swiss-Prot),   Q9H9I4 (UniProtKB/Swiss-Prot),   Q8NDX5 (UniProtKB/Swiss-Prot),   A5YM43 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_016862724   ⟸   XM_017007235
- Peptide Label: isoform X2
- UniProtKB: A5YM43 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_016862727   ⟸   XM_017007238
- Peptide Label: isoform X11
- UniProtKB: A5YM43 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_016862726   ⟸   XM_017007237
- Peptide Label: isoform X7
- UniProtKB: A5YM43 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSP00000417633   ⟸   ENST00000479467
RefSeq Acc Id: ENSP00000417860   ⟸   ENST00000466189
RefSeq Acc Id: ENSP00000419089   ⟸   ENST00000467570
RefSeq Acc Id: ENSP00000420271   ⟸   ENST00000494943
RefSeq Acc Id: ENSP00000420294   ⟸   ENST00000495893
RefSeq Acc Id: ENSP00000417540   ⟸   ENST00000481639
RefSeq Acc Id: ENSP00000420454   ⟸   ENST00000497658
RefSeq Acc Id: ENSP00000418039   ⟸   ENST00000484931
RefSeq Acc Id: ENSP00000418835   ⟸   ENST00000484068
RefSeq Acc Id: ENSP00000417360   ⟸   ENST00000486042
RefSeq Acc Id: ENSP00000420713   ⟸   ENST00000472330
RefSeq Acc Id: ENSP00000419899   ⟸   ENST00000475729
RefSeq Acc Id: XP_047304944   ⟸   XM_047448988
- Peptide Label: isoform X12
RefSeq Acc Id: XP_047304943   ⟸   XM_047448987
- Peptide Label: isoform X10
RefSeq Acc Id: XP_047304942   ⟸   XM_047448986
- Peptide Label: isoform X8
RefSeq Acc Id: XP_047304940   ⟸   XM_047448984
- Peptide Label: isoform X6
RefSeq Acc Id: XP_047304939   ⟸   XM_047448983
- Peptide Label: isoform X4
RefSeq Acc Id: XP_047304938   ⟸   XM_047448982
- Peptide Label: isoform X3
RefSeq Acc Id: XP_047304946   ⟸   XM_047448990
- Peptide Label: isoform X16
RefSeq Acc Id: XP_047304945   ⟸   XM_047448989
- Peptide Label: isoform X14
RefSeq Acc Id: XP_047304947   ⟸   XM_047448991
- Peptide Label: isoform X19
RefSeq Acc Id: XP_054203930   ⟸   XM_054347955
- Peptide Label: isoform X12
RefSeq Acc Id: XP_054203928   ⟸   XM_054347953
- Peptide Label: isoform X10
RefSeq Acc Id: XP_054203926   ⟸   XM_054347951
- Peptide Label: isoform X8
RefSeq Acc Id: XP_054203924   ⟸   XM_054347949
- Peptide Label: isoform X6
RefSeq Acc Id: XP_054203922   ⟸   XM_054347947
- Peptide Label: isoform X4
RefSeq Acc Id: XP_054203918   ⟸   XM_054347943
- Peptide Label: isoform X2
RefSeq Acc Id: XP_054203929   ⟸   XM_054347954
- Peptide Label: isoform X11
RefSeq Acc Id: XP_054203927   ⟸   XM_054347952
- Peptide Label: isoform X9
RefSeq Acc Id: XP_054203925   ⟸   XM_054347950
- Peptide Label: isoform X7
RefSeq Acc Id: XP_054203923   ⟸   XM_054347948
- Peptide Label: isoform X5
RefSeq Acc Id: XP_054203917   ⟸   XM_054347942
- Peptide Label: isoform X1
RefSeq Acc Id: XP_054203919   ⟸   XM_054347944
- Peptide Label: isoform X3
RefSeq Acc Id: XP_054203920   ⟸   XM_054347945
- Peptide Label: isoform X3
RefSeq Acc Id: XP_054203921   ⟸   XM_054347946
- Peptide Label: isoform X3
RefSeq Acc Id: XP_054203933   ⟸   XM_054347958
- Peptide Label: isoform X20
RefSeq Acc Id: XP_054203935   ⟸   XM_054347960
- Peptide Label: isoform X16
RefSeq Acc Id: XP_054203932   ⟸   XM_054347957
- Peptide Label: isoform X14
RefSeq Acc Id: XP_054203931   ⟸   XM_054347956
- Peptide Label: isoform X13
RefSeq Acc Id: XP_054203934   ⟸   XM_054347959
- Peptide Label: isoform X15
- UniProtKB: E7EX82 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054203936   ⟸   XM_054347961
- Peptide Label: isoform X17
RefSeq Acc Id: XP_054203938   ⟸   XM_054347963
- Peptide Label: isoform X19
RefSeq Acc Id: XP_054203937   ⟸   XM_054347962
- Peptide Label: isoform X18
Protein Domains
FCS-type   SAM

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8NDX5-F1-model_v2 AlphaFold Q8NDX5 1-983 view protein structure

Promoters
RGD ID:6866250
Promoter ID:EPDNEW_H6290
Type:initiation region
Name:PHC3_1
Description:polyhomeotic homolog 3
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh383170,181,733 - 170,181,793EPDNEW
RGD ID:6801409
Promoter ID:HG_KWN:46675
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   CD4+TCell_12Hour,   HeLa_S3,   Jurkat,   K562,   Lymphoblastoid,   NB4
Transcripts:NM_024947,   UC003FGM.2,   UC003FGO.1,   UC003FGP.2,   UC003FGQ.2,   UC010HWS.1
Position:
Human AssemblyChrPosition (strand)Source
Build 363171,381,866 - 171,382,366 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:15682 AgrOrtholog
COSMIC PHC3 COSMIC
Ensembl Genes ENSG00000173889 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENST00000466189.5 UniProtKB/TrEMBL
  ENST00000467570 ENTREZGENE
  ENST00000467570.5 UniProtKB/TrEMBL
  ENST00000472330.5 UniProtKB/TrEMBL
  ENST00000475729.5 UniProtKB/TrEMBL
  ENST00000479467.5 UniProtKB/TrEMBL
  ENST00000481639.1 UniProtKB/TrEMBL
  ENST00000484068.5 UniProtKB/TrEMBL
  ENST00000484931.5 UniProtKB/TrEMBL
  ENST00000486042.1 UniProtKB/TrEMBL
  ENST00000494943 ENTREZGENE
  ENST00000494943.5 UniProtKB/Swiss-Prot
  ENST00000495893 ENTREZGENE
  ENST00000495893.7 UniProtKB/Swiss-Prot
  ENST00000497658.5 UniProtKB/Swiss-Prot
Gene3D-CATH 1.10.150.50 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.30.60.160 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
GTEx ENSG00000173889 GTEx
HGNC ID HGNC:15682 ENTREZGENE
Human Proteome Map PHC3 Human Proteome Map
InterPro SAM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SAM/pointed_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_FCS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_FCS_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report hsa:80012 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
NCBI Gene 80012 ENTREZGENE
OMIM 620031 OMIM
PANTHER POLYCOMB GROUP PROTEIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  POLYHOMEOTIC-LIKE PROTEIN 3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam SAM_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  zf-FCS_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PharmGKB PA134886018 PharmGKB
PROSITE SAM_DOMAIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZF_FCS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART SAM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF47769 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A2RRP9 ENTREZGENE
  A5YM43 ENTREZGENE, UniProtKB/TrEMBL
  B4DTC4_HUMAN UniProtKB/TrEMBL
  B4E2T1 ENTREZGENE, UniProtKB/TrEMBL
  C9J6H0_HUMAN UniProtKB/TrEMBL
  C9JAU4_HUMAN UniProtKB/TrEMBL
  C9JYH7_HUMAN UniProtKB/TrEMBL
  E7EX82 ENTREZGENE, UniProtKB/TrEMBL
  F8WDA4_HUMAN UniProtKB/TrEMBL
  G5E9U7_HUMAN UniProtKB/TrEMBL
  H7C4H9_HUMAN UniProtKB/TrEMBL
  H7C528_HUMAN UniProtKB/TrEMBL
  PHC3_HUMAN UniProtKB/Swiss-Prot
  Q5HYF0 ENTREZGENE
  Q6NSG2 ENTREZGENE
  Q8NDX5 ENTREZGENE
  Q8NFT7 ENTREZGENE
  Q8NFZ1 ENTREZGENE
  Q8TBM2 ENTREZGENE
  Q9H971 ENTREZGENE
  Q9H9I4 ENTREZGENE
UniProt Secondary A2RRP9 UniProtKB/Swiss-Prot
  Q5HYF0 UniProtKB/Swiss-Prot
  Q6NSG2 UniProtKB/Swiss-Prot
  Q8NFT7 UniProtKB/Swiss-Prot
  Q8NFZ1 UniProtKB/Swiss-Prot
  Q8TBM2 UniProtKB/Swiss-Prot
  Q9H971 UniProtKB/Swiss-Prot
  Q9H9I4 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-01-26 PHC3  polyhomeotic homolog 3    polyhomeotic homolog 3 (Drosophila)  Symbol and/or name change 5135510 APPROVED