Cytip (cytohesin 1 interacting protein) - Rat Genome Database

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Gene: Cytip (cytohesin 1 interacting protein) Mus musculus
Analyze
Symbol: Cytip
Name: cytohesin 1 interacting protein
RGD ID: 1317501
MGI Page MGI
Description: Predicted to be involved in regulation of cell adhesion. Predicted to be located in cytosol and nucleoplasm. Predicted to be active in cell cortex. Is expressed in metanephros. Orthologous to human CYTIP (cytohesin 1 interacting protein).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: A130053M09Rik; AI462064; C80816; Cb; Cbp; cbp HE; Cyb; Cybr; cytohesin binding protein; cytohesin-binding protein HE; cytohesin-interacting protein; pleckstrin homology Sec7 and coiled-coil domains-binding protein; pleckstrin homology, Sec7 and coiled-coil domains, binding protein; Psc; Pscdbp; tamalin
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39258,019,151 - 58,085,559 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl258,019,149 - 58,085,544 (-)EnsemblGRCm39 Ensembl
GRCm38258,129,139 - 58,195,549 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl258,129,137 - 58,195,532 (-)EnsemblGRCm38mm10GRCm38
MGSCv37257,981,550 - 58,012,533 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36257,947,867 - 57,975,448 (-)NCBIMGSCv36mm8
Celera259,891,468 - 59,922,892 (-)NCBICelera
Cytogenetic Map2C1.1NCBI
cM Map233.05NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dichloroethane  (EXP)
1,2-dimethylhydrazine  (EXP)
1,4-phenylenediamine  (ISO)
1-chloro-2,4-dinitrobenzene  (ISO)
1-fluoro-2,4-dinitrobenzene  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
3,3',4,4',5-pentachlorobiphenyl  (ISO)
4-(ethoxymethylene)-2-phenyloxazol-5-one  (ISO)
6-propyl-2-thiouracil  (ISO)
acetamide  (ISO)
all-trans-retinoic acid  (EXP,ISO)
amitrole  (ISO)
ammonium hexachloroplatinate  (ISO)
antirheumatic drug  (ISO)
azoxystrobin  (ISO)
benzo[a]pyrene  (EXP,ISO)
bisphenol A  (EXP,ISO)
bortezomib  (ISO)
butanal  (ISO)
cadmium dichloride  (ISO)
cannabidiol  (EXP)
carbon nanotube  (EXP)
CGP 52608  (ISO)
chlorpyrifos  (ISO)
choline  (EXP)
chromium(6+)  (EXP)
ciguatoxin CTX1B  (EXP)
cisplatin  (ISO)
clofibrate  (EXP)
dioxygen  (EXP,ISO)
disodium selenite  (ISO)
diuron  (ISO)
endosulfan  (ISO)
ethyl methanesulfonate  (ISO)
folic acid  (EXP)
formaldehyde  (ISO)
fulvestrant  (ISO)
glyphosate  (ISO)
imidacloprid  (ISO)
iron atom  (ISO)
iron(0)  (ISO)
kojic acid  (ISO)
L-methionine  (EXP)
lidocaine  (ISO)
lipopolysaccharide  (EXP,ISO)
methimazole  (ISO)
methyl methanesulfonate  (ISO)
mono(2-ethylhexyl) phthalate  (EXP)
nickel atom  (ISO)
nickel sulfate  (ISO)
paracetamol  (EXP)
paraquat  (ISO)
pentanal  (ISO)
pirinixic acid  (EXP)
propanal  (ISO)
rotenone  (ISO)
serpentine asbestos  (ISO)
silicon dioxide  (EXP,ISO)
sodium arsenite  (EXP,ISO)
sulfadimethoxine  (ISO)
testosterone enanthate  (ISO)
tetrachloromethane  (ISO)
thiabendazole  (ISO)
thioacetamide  (ISO)
titanium dioxide  (EXP)
trichloroethene  (ISO)
trimellitic anhydride  (EXP)
vinclozolin  (ISO)
zoledronic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cell cortex  (IBA,ISO)
cytoplasm  (ISO)
cytosol  (ISO)
endosome  (IEA)
nucleoplasm  (ISO)

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Tamalin, a PDZ domain-containing protein, links a protein complex formation of group 1 metabotropic glutamate receptors and the guanine nucleotide exchange factor cytohesins. Kitano J, etal., J Neurosci 2002 Feb 15;22(4):1280-9.
2. Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Ko MS, etal., Development 2000 Apr;127(8):1737-49.
3. MGDs mouse GO annotations MGD data from the GO Consortium
4. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
5. Mouse MP Annotation Import Pipeline RGD automated import pipeline
6. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12477932   PMID:12606567   PMID:12909129   PMID:15489334   PMID:16141072   PMID:16141073   PMID:16809763   PMID:16914744  
PMID:19744714   PMID:21267068   PMID:21677750   PMID:21873635   PMID:22488362   PMID:24194600   PMID:27626380   PMID:36809245  


Genomics

Comparative Map Data
Cytip
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39258,019,151 - 58,085,559 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl258,019,149 - 58,085,544 (-)EnsemblGRCm39 Ensembl
GRCm38258,129,139 - 58,195,549 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl258,129,137 - 58,195,532 (-)EnsemblGRCm38mm10GRCm38
MGSCv37257,981,550 - 58,012,533 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36257,947,867 - 57,975,448 (-)NCBIMGSCv36mm8
Celera259,891,468 - 59,922,892 (-)NCBICelera
Cytogenetic Map2C1.1NCBI
cM Map233.05NCBI
CYTIP
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382157,414,619 - 157,444,089 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2157,414,619 - 157,488,961 (-)EnsemblGRCh38hg38GRCh38
GRCh372158,271,131 - 158,300,601 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362157,979,377 - 158,008,850 (-)NCBINCBI36Build 36hg18NCBI36
Build 342158,096,639 - 158,126,112NCBI
Celera2151,884,278 - 151,913,751 (-)NCBICelera
Cytogenetic Map2q24.1NCBI
HuRef2150,156,652 - 150,186,277 (-)NCBIHuRef
CHM1_12158,277,149 - 158,306,602 (-)NCBICHM1_1
T2T-CHM13v2.02157,867,761 - 157,897,538 (-)NCBIT2T-CHM13v2.0
Cytip
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8363,106,895 - 63,183,769 (-)NCBIGRCr8
mRatBN7.2342,698,058 - 42,774,955 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl342,698,768 - 42,725,993 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx346,030,208 - 46,057,446 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0354,626,568 - 54,653,798 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0352,405,369 - 52,432,599 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0344,150,494 - 44,225,723 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl344,150,992 - 44,177,689 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0349,269,641 - 49,344,787 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4339,893,884 - 39,921,114 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1339,790,260 - 39,817,486 (-)NCBI
Celera340,767,224 - 40,794,368 (-)NCBICelera
Cytogenetic Map3q21NCBI
Cytip
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544915,948,531 - 15,977,397 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495544915,948,739 - 15,978,641 (+)NCBIChiLan1.0ChiLan1.0
CYTIP
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21360,076,414 - 60,153,366 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B60,092,214 - 60,123,448 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B44,673,289 - 44,702,725 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B161,913,676 - 161,942,687 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B161,913,684 - 161,942,617 (-)Ensemblpanpan1.1panPan2
CYTIP
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1363,429,407 - 3,501,992 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl363,431,934 - 3,503,140 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha363,566,361 - 3,639,265 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0363,551,505 - 3,624,462 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl363,551,505 - 3,625,315 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1363,553,796 - 3,627,461 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0363,613,492 - 3,686,312 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0363,651,516 - 3,724,409 (-)NCBIUU_Cfam_GSD_1.0
Cytip
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303120,556,416 - 120,586,884 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493646921,034,015 - 21,063,704 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493646921,030,855 - 21,062,919 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CYTIP
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1564,353,475 - 64,382,152 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11564,353,146 - 64,421,306 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21571,188,262 - 71,214,530 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CYTIP
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11042,823,176 - 42,902,194 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1042,822,776 - 42,902,171 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666040156,676,252 - 156,753,529 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cytip
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247328,363,037 - 8,420,859 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247328,363,101 - 8,420,627 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Cytip
2395 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:2594
Count of miRNA genes:873
Interacting mature miRNAs:1210
Transcripts:ENSMUST00000028175, ENSMUST00000131443, ENSMUST00000144117, ENSMUST00000146545, ENSMUST00000148764, ENSMUST00000151169, ENSMUST00000151785, ENSMUST00000153052
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301769Orgwq2_morgan weight QTL 2 (mouse)Not determined2388712693421651Mouse
8552707Cia23_mcollagen induced arthritis QTL 23 (mouse)Not determined21212953766556453Mouse
1357881Estoq1_membryo survival total QTL 1 (mouse)Not determined220897778118894840Mouse
1357454Kidq1_mkidney weight QTL 1 (mouse)Not determined220897778118894840Mouse
1357436Splq1_mspleen weight QTL 1 (mouse)Not determined220897778118894840Mouse
39128209Lwq14_mliver weight QTL 14 (mouse)220897778118894840Mouse
1558899Egq1_mearly growth QTL 1 (mouse)Not determined220897778118894840Mouse
1558966W10q9_mweight 10 weeks QTL 9 (mouse)Not determined220897778118894840Mouse
1558915W3q1_mweight 3 weeks QTL 1 (mouse)Not determined220897778118894840Mouse
1558738W6q1_mweight 6 weeks QTL 1 (mouse)Not determined220897778118894840Mouse
1357681Hrtq1_mheart weight QTL 1 (mouse)Not determined220897778118894840Mouse
1302174Dssc2_mdextran sodium sulfate induced colitis QTL2 (mouse)Not determined224224632148700377Mouse
1300577Capsq1_mcapsaicin sensitivity related QTL 1 (mouse)Not determined22760206084013384Mouse
14746979Manh51_mmandible shape 51 (mouse)22896112962961129Mouse
14746997Mancz2_mmandible centroid size 2 (mouse)22896112962961129Mouse
4141854T2dm2sa_mtype 2 diabetes mellitus 2 in SMXA RI mice (mouse)Not determined229307947148374934Mouse
4141236Hbnr5_mHeligmosomoides bakeri nematode resistance 5 (mouse)Not determined31214567105143570Mouse
4142447Pbwg1.7_mpostnatal body weight growth 1.7 (mouse)Not determined3579732469797406Mouse
4141186Pbwg1.8_mpostnatal body weight growth 1.8 (mouse)Not determined3579732469797406Mouse
4142133Pbwg1.6_mpostnatal body weight growth 1.6 (mouse)Not determined3579732469797406Mouse
1559001Eae33_mexperimental allergic encephalomyelitis susceptibility 33 (mouse)Not determined23599167971609412Mouse
10449151Hdl8_mhigh density lipoprotein (HDL) level 8 (mouse)23812972567072607Mouse
10449150Pvldlc1_mplasma VLDL-cholesterol 1 (mouse)23812972567072607Mouse
10449145Lanq1_mlanosterol level QTL 1 (mouse)23812972567072607Mouse
11038703Ltpr1_mLeishmania tropica response 1 (mouse)23997166573971811Mouse
1301109Dntcs2_mdental caries susceptibility 2 (mouse)Not determined240885493114910165Mouse
1301480Pbwg1_mpostnatal body weight growth 1 (mouse)Not determined24182071975820843Mouse
4141069Pbwg1.5_mpostnatal body weight growth 1.5 (mouse)Not determined4352061277520756Mouse
1300788Cia2_mcollagen induced arthritis QTL 2 (mouse)Not determined24352061277520756Mouse
1300671Cia4_mcollagen induced arthritis QTL 4 (mouse)Not determined24352061277520756Mouse
1301402Ap2q_malcohol preference 2 QTL (mouse)Not determined24352061277520756Mouse
1301411Pitm1_mprion incubation time 1 (mouse)Not determined24352061277520756Mouse
10755532Lymph5_mlymphocyte differential 5 (mouse)24419901778199017Mouse
1300645Alcp1_malcohol preference locus 1 (mouse)Not determined24522812867838868Mouse
1301344Lith1_mlithogenic gene 1 (mouse)Not determined245347635145312647Mouse
11532740Pbwg1.10_mpostnatal body weight growth 1.10 (mouse)24813241282132495Mouse
1558820Moo1_mmodifier of Odc1 (mouse)Not determined174826974682269934Mouse
1301747Eae21_mexperimental allergic encephalomyelitis 21 (mouse)Not determined24826974682269934Mouse
1301235Alcw4_malcohol withdrawal 4 (mouse)Not determined24826974682269934Mouse
1300568Hdl1_mhigh density lipoprotein (HDL) level 1 (mouse)Not determined24826974682269934Mouse
10755526Lymph1_mlymphocyte differential 1 (mouse)25081931484819314Mouse
1300875Taste1_mtaste-saccharin preference 1 (mouse)Not determined25092317584923278Mouse
1300761Lgth1_mbody length 1 (mouse)Not determined25170327685703425Mouse
13464141Hbbcq3_mhemoglobin concentration QTL 3 (mouse)25244801986448136Mouse
13463471Hctq6_mhematocrit QTL 6 (mouse)25244801986448136Mouse
4142185Pbwg1.3_mpostnatal body weight growth 1.3 (mouse)Not determined5718712365132495Mouse
4141406Alpq2_malcohol preference QTL 2 (mouse)Not determined25752411791524288Mouse
12738429Lfibq18_mliver fibrosis QTL 18 (mouse)25791999191919991Mouse

Markers in Region
AI462064  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38258,129,449 - 58,129,535UniSTSGRCm38
MGSCv37257,981,860 - 57,981,946UniSTSGRCm37
Celera259,891,778 - 59,891,864UniSTS
Cytogenetic Map2C1.1UniSTS
Whitehead/MRC_RH2947.78UniSTS
RH126974  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38258,132,966 - 58,133,189UniSTSGRCm38
MGSCv37257,985,377 - 57,985,600UniSTSGRCm37
Celera259,895,424 - 59,895,647UniSTS
Cytogenetic Map2C1.1UniSTS
Whitehead/MRC_RH2950.51UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_139200 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006498012 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006498013 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AF192525 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF374273 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK030882 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK037842 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK042173 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK052848 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK089364 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK142679 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK152784 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK157859 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK164790 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK166254 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK168343 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK169575 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK170301 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK170544 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK170796 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK171467 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK172071 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK172380 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL928564 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC007144 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466519 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000028175   ⟹   ENSMUSP00000028175
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl258,019,149 - 58,050,507 (-)Ensembl
GRCm38.p6 Ensembl258,129,137 - 58,160,495 (-)Ensembl
RefSeq Acc Id: ENSMUST00000131443
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl258,024,078 - 58,046,809 (-)Ensembl
GRCm38.p6 Ensembl258,134,066 - 58,156,797 (-)Ensembl
RefSeq Acc Id: ENSMUST00000144117
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl258,023,861 - 58,085,529 (-)Ensembl
GRCm38.p6 Ensembl258,133,849 - 58,195,517 (-)Ensembl
RefSeq Acc Id: ENSMUST00000146545
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl258,037,571 - 58,050,131 (-)Ensembl
GRCm38.p6 Ensembl258,147,559 - 58,160,119 (-)Ensembl
RefSeq Acc Id: ENSMUST00000148764
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl258,023,946 - 58,085,539 (-)Ensembl
GRCm38.p6 Ensembl258,133,934 - 58,195,527 (-)Ensembl
RefSeq Acc Id: ENSMUST00000151169
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl258,050,049 - 58,050,669 (-)Ensembl
GRCm38.p6 Ensembl258,160,037 - 58,160,657 (-)Ensembl
RefSeq Acc Id: ENSMUST00000151785
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl258,037,746 - 58,085,540 (-)Ensembl
GRCm38.p6 Ensembl258,147,734 - 58,195,528 (-)Ensembl
RefSeq Acc Id: ENSMUST00000153052
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl258,049,988 - 58,085,544 (-)Ensembl
GRCm38.p6 Ensembl258,159,976 - 58,195,532 (-)Ensembl
RefSeq Acc Id: NM_139200   ⟹   NP_631939
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39258,019,151 - 58,050,134 (-)NCBI
GRCm38258,129,139 - 58,160,122 (-)NCBI
MGSCv37257,981,550 - 58,012,533 (-)RGD
Celera259,891,468 - 59,922,892 (-)RGD
cM Map2 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006498012   ⟹   XP_006498075
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39258,022,730 - 58,085,559 (-)NCBI
GRCm38258,132,718 - 58,195,549 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006498013   ⟹   XP_006498076
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39258,022,730 - 58,050,664 (-)NCBI
GRCm38258,132,718 - 58,160,652 (-)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_631939   ⟸   NM_139200
- UniProtKB: Q8R4T4 (UniProtKB/Swiss-Prot),   Q3TZH1 (UniProtKB/Swiss-Prot),   A2AS77 (UniProtKB/Swiss-Prot),   Q9QZA9 (UniProtKB/Swiss-Prot),   Q91VY6 (UniProtKB/Swiss-Prot),   Q3TCC3 (UniProtKB/TrEMBL),   Q3TLX8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006498075   ⟸   XM_006498012
- Peptide Label: isoform X1
- UniProtKB: Q8R4T4 (UniProtKB/Swiss-Prot),   Q3TZH1 (UniProtKB/Swiss-Prot),   A2AS77 (UniProtKB/Swiss-Prot),   Q9QZA9 (UniProtKB/Swiss-Prot),   Q91VY6 (UniProtKB/Swiss-Prot),   Q3TCC3 (UniProtKB/TrEMBL),   Q3TLX8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006498076   ⟸   XM_006498013
- Peptide Label: isoform X1
- UniProtKB: Q8R4T4 (UniProtKB/Swiss-Prot),   Q3TZH1 (UniProtKB/Swiss-Prot),   A2AS77 (UniProtKB/Swiss-Prot),   Q9QZA9 (UniProtKB/Swiss-Prot),   Q91VY6 (UniProtKB/Swiss-Prot),   Q3TCC3 (UniProtKB/TrEMBL),   Q3TLX8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000028175   ⟸   ENSMUST00000028175
Protein Domains
PDZ

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q91VY6-F1-model_v2 AlphaFold Q91VY6 1-359 view protein structure

Promoters
RGD ID:6831124
Promoter ID:MM_KWN:29274
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Kidney,   Lung,   Spleen
Transcripts:OTTMUST00000030201,   OTTMUST00000030204,   OTTMUST00000030208,   UC008JSJ.1,   UC008JSK.1,   UC008JSM.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36258,012,396 - 58,013,547 (-)MPROMDB
RGD ID:6877352
Promoter ID:EPDNEW_M2127
Type:initiation region
Name:Cytip_1
Description:Mus musculus cytohesin 1 interacting protein , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M2129  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38258,160,122 - 58,160,182EPDNEW
RGD ID:6877356
Promoter ID:EPDNEW_M2129
Type:initiation region
Name:Cytip_2
Description:Mus musculus cytohesin 1 interacting protein , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M2127  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38258,195,531 - 58,195,591EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2183535 AgrOrtholog
Ensembl Genes ENSMUSG00000026832 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000028175 ENTREZGENE
  ENSMUST00000028175.7 UniProtKB/Swiss-Prot
Gene3D-CATH 2.30.42.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro PDZ UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PDZ_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:227929 UniProtKB/Swiss-Prot
MGD MGI:2183535 ENTREZGENE
NCBI Gene 227929 ENTREZGENE
PANTHER CYTOHESIN-INTERACTING PROTEIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GENERAL RECEPTOR FOR PHOSPHOINOSITIDES 1-ASSOCIATED SCAFFOLD PROTEIN-RELATED UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam PDZ UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Cytip PhenoGen
PROSITE PDZ UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART PDZ UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF50156 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A2AS77 ENTREZGENE
  CYTIP_MOUSE UniProtKB/Swiss-Prot
  Q3TCC3 ENTREZGENE, UniProtKB/TrEMBL
  Q3THB7_MOUSE UniProtKB/TrEMBL
  Q3TLX8 ENTREZGENE, UniProtKB/TrEMBL
  Q3TZH1 ENTREZGENE
  Q8R4T4 ENTREZGENE
  Q91VY6 ENTREZGENE
  Q9QZA9 ENTREZGENE
UniProt Secondary A2AS77 UniProtKB/Swiss-Prot
  Q3TZH1 UniProtKB/Swiss-Prot
  Q8R4T4 UniProtKB/Swiss-Prot
  Q9QZA9 UniProtKB/Swiss-Prot