Usp30 (ubiquitin specific peptidase 30) - Rat Genome Database

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Gene: Usp30 (ubiquitin specific peptidase 30) Mus musculus
Analyze
Symbol: Usp30
Name: ubiquitin specific peptidase 30
RGD ID: 1317442
MGI Page MGI
Description: Enables cysteine-type deubiquitinase activity. Involved in mitochondrial fusion. Located in mitochondrion. Orthologous to human USP30 (ubiquitin specific peptidase 30).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 6330590F17Rik; AI851327; D5Ertd483; D5Ertd483e; deubiquitinating enzyme 30; ub-specific protease 30; ubiquitin carboxyl-terminal hydrolase 30; ubiquitin specific protease 30; ubiquitin thioesterase 30; ubiquitin thiolesterase 30; ubiquitin-specific protease 30; ubiquitin-specific-processing protease 30
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395114,238,395 - 114,261,571 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5114,203,522 - 114,262,781 (+)EnsemblGRCm39 Ensembl
GRCm385114,100,299 - 114,123,510 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5114,065,461 - 114,124,720 (+)EnsemblGRCm38mm10GRCm38
MGSCv375114,550,342 - 114,572,933 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365114,361,332 - 114,383,923 (+)NCBIMGSCv36mm8
Celera5111,202,052 - 111,224,786 (+)NCBICelera
Cytogenetic Map5FNCBI
cM Map555.96NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. The three 'P's of mitophagy: PARKIN, PINK1, and post-translational modifications. Durcan TM and Fon EA, Genes Dev. 2015 May 15;29(10):989-99. doi: 10.1101/gad.262758.115.
2. Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Ko MS, etal., Development 2000 Apr;127(8):1737-49.
3. MGDs mouse GO annotations MGD data from the GO Consortium
4. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
5. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
7. Database resources of the National Center for Biotechnology Information. Wheeler DL, etal., Nucleic Acids Res 2001 Jan 1;29(1):11-6.
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12477932   PMID:12520002   PMID:15782199   PMID:16141072   PMID:16141073   PMID:21267068  
PMID:21873635   PMID:24513856   PMID:30550785   PMID:30700497   PMID:30973865   PMID:32142684   PMID:34648346   PMID:37957154   PMID:38111333  


Genomics

Comparative Map Data
Usp30
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395114,238,395 - 114,261,571 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5114,203,522 - 114,262,781 (+)EnsemblGRCm39 Ensembl
GRCm385114,100,299 - 114,123,510 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5114,065,461 - 114,124,720 (+)EnsemblGRCm38mm10GRCm38
MGSCv375114,550,342 - 114,572,933 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365114,361,332 - 114,383,923 (+)NCBIMGSCv36mm8
Celera5111,202,052 - 111,224,786 (+)NCBICelera
Cytogenetic Map5FNCBI
cM Map555.96NCBI
USP30
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3812109,023,089 - 109,088,023 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl12109,023,089 - 109,088,023 (+)EnsemblGRCh38hg38GRCh38
GRCh3712109,460,894 - 109,525,828 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3612107,974,774 - 108,008,570 (+)NCBINCBI36Build 36hg18NCBI36
Build 3412107,953,110 - 107,986,902NCBI
Celera12109,114,313 - 109,149,755 (+)NCBICelera
Cytogenetic Map12q24.11NCBI
HuRef12106,508,557 - 106,544,000 (+)NCBIHuRef
CHM1_112109,458,035 - 109,493,484 (+)NCBICHM1_1
T2T-CHM13v2.012108,997,903 - 109,062,835 (+)NCBIT2T-CHM13v2.0
Usp30
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81248,161,905 - 48,215,878 (-)NCBIGRCr8
mRatBN7.21242,501,345 - 42,555,311 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1242,501,348 - 42,555,616 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1243,668,550 - 43,692,334 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01244,282,141 - 44,305,925 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01243,342,658 - 43,366,442 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01248,262,663 - 48,316,580 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1248,262,658 - 48,316,722 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01250,044,991 - 50,068,680 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41243,536,736 - 43,560,425 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11243,400,118 - 43,423,920 (-)NCBI
Celera1244,105,878 - 44,129,550 (-)NCBICelera
Cytogenetic Map12q16NCBI
Usp30
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545510,192,426 - 10,257,951 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495545510,234,779 - 10,257,959 (+)NCBIChiLan1.0ChiLan1.0
USP30
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v210117,118,330 - 117,153,807 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan112117,114,728 - 117,150,205 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v012106,629,106 - 106,664,512 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.112110,022,959 - 110,058,341 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl12110,022,959 - 110,058,335 (+)Ensemblpanpan1.1panPan2
USP30
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12617,918,852 - 17,981,947 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2617,919,512 - 17,981,846 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2617,819,516 - 17,882,690 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02618,263,125 - 18,326,383 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2618,263,186 - 18,325,934 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12618,028,784 - 18,091,985 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02618,253,735 - 18,317,019 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02618,272,123 - 18,335,625 (-)NCBIUU_Cfam_GSD_1.0
Usp30
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118144,573,496 - 144,649,361 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936769826,615 - 904,034 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936769874,188 - 902,690 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
USP30
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1441,766,254 - 41,818,918 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11441,765,220 - 41,818,937 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21444,332,394 - 44,391,610 (-)NCBISscrofa10.2Sscrofa10.2susScr3
USP30
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.111104,254,923 - 104,292,373 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl11104,255,012 - 104,290,273 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037140,811,135 - 140,845,734 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Usp30
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474712,184,297 - 12,250,687 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474712,219,139 - 12,248,614 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Usp30
906 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:666
Count of miRNA genes:427
Interacting mature miRNAs:504
Transcripts:ENSMUST00000031588
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
11341716Rvfs3_mRift Valley fever susceptibility 3 (mouse)526441234138455402Mouse
4142064Tmc1m4_mTmc1 modifier 4 (mouse)Not determined554500177127001072Mouse
26884395Humsd2_mhumerus midshaft diameter 2, 10 week (mouse)570057343132528839Mouse
27226719Tibw6_mtibia width 6, proximal, 16 week (mouse)572857343139985755Mouse
25314315Mlh1fc4_mMLH1 foci count 4 (mouse)574460661132528839Mouse
13506928Recrq8_mrecombination rate in male meiosis QTL 8 (mouse)574460661132528839Mouse
1357431Cia27_mcollagen induced arthritis 27 (mouse)Not determined575315348120018629Mouse
10755524Mono1_mmonocyte differential 1 (mouse)580849259114849259Mouse
1301419Cypr3_mcytokine production 3 (mouse)Not determined581019649115019803Mouse
10401245Bglu18_mblood glucose level 18 (mouse)Not determined582838468116838597Mouse
13464242Ahl17_mage related hearing loss, early onset 17 (mouse)582838468116838597Mouse
10043958Chldq12_mcholesterol and HDL QTL 12 (mouse)Not determined587386871121387065Mouse
1301126Bwem1_mbody weight day 30 males 1 (mouse)Not determined587386871121387065Mouse
13464241Ahl18_mage related hearing loss, early onset 18 (mouse)587386871121387065Mouse
1300801Drb2_mdopamine receptor binding 2 (mouse)Not determined587386871121387065Mouse
1301399Cpfd3_mcerebellum pattern fissures (mouse)Not determined587386871121387065Mouse
1357725Eae39_mexperimental allergic encephalomyelitis 39 (mouse)Not determined589418876118864028Mouse
1300968Skts4_mskin tumor susceptibility 4 (mouse)Not determined589418876124238239Mouse
1301362Prnr1_mprion resistance 1 (mouse)Not determined589418876146787935Mouse
11049562Lmr24f_mleishmaniasis resistance 24f (mouse)590320962124321041Mouse
1301457Cfsw2_mcystic fibrosis survival to weaning 2 (mouse)Not determined590561006124561151Mouse
1300993Hycdc_mhypercapnic duty cycle (mouse)Not determined590561006124561151Mouse
9587780Afw16_mabdominal fat weight QTL 16 (mouse)Not determined592830166126830285Mouse
1301974Chab7_mcholesterol absorption 7 (mouse)Not determined595233214129233330Mouse
1357644Egrd1_mearly growth rate, direct effect 1 (mouse)Not determined595434580129434786Mouse
10402486Dipa1_mdrug induced psychomotor activation 1 (mouse)Not determined595465549129465722Mouse
13464244Ahl19_mage related hearing loss, early onset 19 (mouse)595465549129465722Mouse
1558774Lith17_mlithogenic gene 17 (mouse)Not determined595465549129465722Mouse
1300940Actd3_mactivity-distance traveled 3 (mouse)Not determined596320385130320533Mouse
1300659Pcd8ts1_mp-glycoprotein positive CD8 T cell subset 1 (mouse)Not determined597021753131021986Mouse
1301858Smdq1_msegregation of mitochondrial DNA QTL 1 (mouse)Not determined597021753131021986Mouse
1301042Elmaz1_melevated maze behavior 1 (mouse)Not determined598019649116876624Mouse
4141519Hmtb5_mhemostasis and thrombosis bleeding time 5 (mouse)Not determined99949422126882944Mouse
12904945Tammq2_mtibialis anterior muscle mass QTL 2 (mouse)5100665965134665965Mouse
12904959Smmq1_msoleus muscle mass QTL 1 (mouse)5100665965134665965Mouse
12859290Criq2_mCitrobacter rodentium infection QTL 2 (mouse)5101332579135332579Mouse
1301624Aevm2_mautoimmune extremity vasculitis in MRL mice 2 (mouse)Not determined5101863832135864028Mouse
14746986Manh58_mmandible shape 58 (mouse)5102446283136446283Mouse
11532736Sluc33b_msusceptibility to lung cancer 33b (mouse)5102945037136945196Mouse
25314310Syncl4_msynaptonemal complex length 4 (mouse)5103047866115538059Mouse
25314317Sccor3_msynaptonemal complex length to mean MLH1 count ratio 3 (mouse)5104347866114738061Mouse
11528550Sluc33_msusceptibility to lung cancer 33 (mouse)5104386871120711986Mouse
1357886Diht_mdopamine-induced hypothermia (mouse)Not determined5104498738115101540Mouse
10412202Bbaa26_mB.burgdorferi-associated arthritis 26 (mouse)Not determined5104583688138555455Mouse
10412239Alpq7_malcohol preference QTL 7 (mouse)Not determined5104705939138705939Mouse
10043890Trigq4_mtriglyceride QTL 4 (mouse)Not determined5107906299141906412Mouse
4142473Chlq11_mcirculating hormone level QTL 11 (mouse)Not determined5107906299141906412Mouse
13464243Ahl20_mage related hearing loss, early onset 20 (mouse)5107906299141906412Mouse
4141139Hmtb4_mhemostasis and thrombosis rebleeding time 4 (mouse)Not determined108762509126882944Mouse
10412197Bbaa25_mB.burgdorferi-associated arthritis 25 (mouse)Not determined5109167240143167381Mouse
13464251Ahl21_mage related hearing loss, early onset 21 (mouse)5109167240143167381Mouse
1301543Hypch_mhypercholesterolemia (mouse)Not determined5109238624139118905Mouse
1300913Bwefm_mbody weight females and males day 10 (mouse)Not determined5109439348143439459Mouse
4141652Mrdq2_mmodifier of retinal degeneration QTL 2 (mouse)Not determined110253106118093673Mouse
1301102Cia14_mcollagen induced arthritis 14 (mouse)Not determined5113320385138555455Mouse
1357662Lprq4_mlipoprotein QTL 4 (mouse)Not determined5114021753129632606Mouse

Markers in Region
AU016977  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm385114,124,022 - 114,124,160UniSTSGRCm38
MGSCv375114,574,031 - 114,574,169UniSTSGRCm37
Celera5111,225,884 - 111,226,022UniSTS
Cytogenetic Map5FUniSTS
cM Map561.0UniSTS
Whitehead/MRC_RH51383.51UniSTS
AI851327  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm385114,122,551 - 114,122,638UniSTSGRCm38
MGSCv375114,572,560 - 114,572,647UniSTSGRCm37
Celera5111,224,413 - 111,224,500UniSTS
Cytogenetic Map5FUniSTS
cM Map561.0UniSTS
Whitehead/MRC_RH51358.34UniSTS
C87249  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm385114,123,179 - 114,123,381UniSTSGRCm38
MGSCv375114,573,188 - 114,573,390UniSTSGRCm37
Celera5111,225,041 - 111,225,243UniSTS
Cytogenetic Map5FUniSTS
cM Map561.0UniSTS
Whitehead/MRC_RH51381.58UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001033202 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001417952 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001417953 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001417954 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001417955 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_184657 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_184658 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036164697 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC129080 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK078164 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK144578 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK162153 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK162269 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK183278 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK186709 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK193579 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK209575 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK215668 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK216289 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC038606 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000031588   ⟹   ENSMUSP00000031588
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5114,238,376 - 114,262,781 (+)Ensembl
GRCm38.p6 Ensembl5114,100,315 - 114,124,720 (+)Ensembl
RefSeq Acc Id: ENSMUST00000160164
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5114,203,811 - 114,225,016 (+)Ensembl
GRCm38.p6 Ensembl5114,065,750 - 114,086,955 (+)Ensembl
RefSeq Acc Id: ENSMUST00000162506
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5114,203,522 - 114,227,527 (+)Ensembl
GRCm38.p6 Ensembl5114,065,461 - 114,089,466 (+)Ensembl
RefSeq Acc Id: ENSMUST00000196574
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5114,241,773 - 114,250,379 (+)Ensembl
GRCm38.p6 Ensembl5114,103,712 - 114,112,318 (+)Ensembl
RefSeq Acc Id: ENSMUST00000198457
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5114,249,189 - 114,249,708 (+)Ensembl
GRCm38.p6 Ensembl5114,111,128 - 114,111,647 (+)Ensembl
RefSeq Acc Id: ENSMUST00000200119   ⟹   ENSMUSP00000142350
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5114,238,421 - 114,259,157 (+)Ensembl
GRCm38.p6 Ensembl5114,100,360 - 114,121,096 (+)Ensembl
RefSeq Acc Id: ENSMUST00000202603   ⟹   ENSMUSP00000144522
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5114,203,575 - 114,243,912 (+)Ensembl
GRCm38.p6 Ensembl5114,065,514 - 114,105,851 (+)Ensembl
RefSeq Acc Id: NM_001033202   ⟹   NP_001028374
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395114,238,395 - 114,261,569 (+)NCBI
GRCm385114,100,333 - 114,122,924 (+)NCBI
MGSCv375114,550,342 - 114,572,933 (+)RGD
Celera5111,202,052 - 111,224,786 (+)RGD
cM Map5 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001417952   ⟹   NP_001404881
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395114,238,395 - 114,261,569 (+)NCBI
RefSeq Acc Id: NM_001417953   ⟹   NP_001404882
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395114,238,395 - 114,261,569 (+)NCBI
RefSeq Acc Id: NM_001417954   ⟹   NP_001404883
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395114,241,409 - 114,261,569 (+)NCBI
RefSeq Acc Id: NM_001417955   ⟹   NP_001404884
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395114,238,395 - 114,261,569 (+)NCBI
RefSeq Acc Id: NR_184657
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395114,238,395 - 114,261,569 (+)NCBI
RefSeq Acc Id: NR_184658
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395114,238,395 - 114,261,569 (+)NCBI
RefSeq Acc Id: XM_036164697   ⟹   XP_036020590
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395114,238,575 - 114,261,571 (+)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_001028374   ⟸   NM_001033202
- Peptide Label: isoform 1
- UniProtKB: Q8BVI3 (UniProtKB/Swiss-Prot),   Q3TSB9 (UniProtKB/Swiss-Prot),   Q3TS48 (UniProtKB/Swiss-Prot),   Q8CHW7 (UniProtKB/Swiss-Prot),   Q3UN04 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSMUSP00000144522   ⟸   ENSMUST00000202603
RefSeq Acc Id: ENSMUSP00000031588   ⟸   ENSMUST00000031588
RefSeq Acc Id: ENSMUSP00000142350   ⟸   ENSMUST00000200119
RefSeq Acc Id: XP_036020590   ⟸   XM_036164697
- Peptide Label: isoform X2
RefSeq Acc Id: NP_001404882   ⟸   NM_001417953
- Peptide Label: isoform 3
RefSeq Acc Id: NP_001404881   ⟸   NM_001417952
- Peptide Label: isoform 2
RefSeq Acc Id: NP_001404884   ⟸   NM_001417955
- Peptide Label: isoform 5
RefSeq Acc Id: NP_001404883   ⟸   NM_001417954
- Peptide Label: isoform 4
Protein Domains
USP

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q3UN04-F1-model_v2 AlphaFold Q3UN04 1-517 view protein structure

Promoters
RGD ID:6887664
Promoter ID:EPDNEW_M7283
Type:initiation region
Name:Usp30_1
Description:Mus musculus ubiquitin specific peptidase 30 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm385114,100,334 - 114,100,394EPDNEW
RGD ID:6838607
Promoter ID:MM_KWN:43535
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   Kidney,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:OTTMUST00000040853
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv365114,549,716 - 114,550,477 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2140991 AgrOrtholog
Ensembl Genes ENSMUSG00000029592 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000031588 ENTREZGENE
  ENSMUST00000031588.12 UniProtKB/Swiss-Prot
  ENSMUST00000200119.3 UniProtKB/TrEMBL
  ENSMUST00000202603.4 UniProtKB/TrEMBL
Gene3D-CATH Cysteine proteinases UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Papain-like_cys_pep_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Peptidase_C19_UCH UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  USP_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  USP_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:100756 UniProtKB/Swiss-Prot
MGD MGI:2140991 ENTREZGENE
NCBI Gene 100756 ENTREZGENE
PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 30 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam UCH UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Usp30 PhenoGen
PROSITE USP_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  USP_2 UniProtKB/Swiss-Prot
  USP_3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF54001 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0G2JDF7_MOUSE UniProtKB/TrEMBL
  A0A0J9YV73_MOUSE UniProtKB/TrEMBL
  Q3TS48 ENTREZGENE
  Q3TSB9 ENTREZGENE
  Q3UN04 ENTREZGENE
  Q8BVI3 ENTREZGENE
  Q8CHW7 ENTREZGENE
  UBP30_MOUSE UniProtKB/Swiss-Prot
UniProt Secondary Q3TS48 UniProtKB/Swiss-Prot
  Q3TSB9 UniProtKB/Swiss-Prot
  Q8BVI3 UniProtKB/Swiss-Prot
  Q8CHW7 UniProtKB/Swiss-Prot