Pcbp4 (poly(rC) binding protein 4) - Rat Genome Database
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Gene: Pcbp4 (poly(rC) binding protein 4) Mus musculus
Analyze
Symbol: Pcbp4
Name: poly(rC) binding protein 4
RGD ID: 1317377
MGI Page MGI
Description: Predicted to have mRNA 3'-UTR binding activity. Involved in negative regulation of DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator and negative regulation of mRNA splicing, via spliceosome. Predicted to localize to cytosol and nucleus. Is expressed in central nervous system; dorsal root ganglion; and olfactory epithelium. Orthologous to human PCBP4 (poly(rC) binding protein 4); PARTICIPATES IN iron homeostasis pathway; INTERACTS WITH 1,2-dimethylhydrazine; 17alpha-ethynylestradiol; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: 1200003L19Rik; Alph; alpha-CP4; AlphaCP-4; poly(rC)-binding protein 4
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399106,330,181 - 106,341,211 (+)NCBIGRCm39mm39
GRCm389106,452,982 - 106,464,012 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9106,453,291 - 106,464,012 (+)EnsemblGRCm38mm10GRCm38
MGSCv379106,356,188 - 106,366,343 (+)NCBIGRCm37mm9NCBIm37
MGSCv369106,311,991 - 106,322,108 (+)NCBImm8
Celera9106,080,920 - 106,090,913 (+)NCBICelera
Cytogenetic Map9F1NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (IBA)
cytosol  (ISO)
nucleus  (IBA)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10922068   PMID:10936052   PMID:11042159   PMID:11076861   PMID:12477932   PMID:12904583   PMID:14610273   PMID:15489334   PMID:15782199   PMID:16033648  
PMID:16141072   PMID:16141073   PMID:17967808   PMID:18799693   PMID:20817677   PMID:21267068   PMID:21873635   PMID:23636947   PMID:26915821   PMID:28705898   PMID:32325033  


Genomics

Comparative Map Data
Pcbp4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399106,330,181 - 106,341,211 (+)NCBIGRCm39mm39
GRCm389106,452,982 - 106,464,012 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9106,453,291 - 106,464,012 (+)EnsemblGRCm38mm10GRCm38
MGSCv379106,356,188 - 106,366,343 (+)NCBIGRCm37mm9NCBIm37
MGSCv369106,311,991 - 106,322,108 (+)NCBImm8
Celera9106,080,920 - 106,090,913 (+)NCBICelera
Cytogenetic Map9F1NCBI
PCBP4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl351,957,454 - 51,974,016 (-)EnsemblGRCh38hg38GRCh38
GRCh38351,957,454 - 51,967,466 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37351,991,470 - 52,001,482 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36351,966,514 - 51,976,509 (-)NCBINCBI36hg18NCBI36
Build 34351,966,513 - 51,971,948NCBI
Celera351,970,297 - 51,980,309 (-)NCBI
Cytogenetic Map3p21.2NCBI
HuRef352,054,808 - 52,064,820 (-)NCBIHuRef
CHM1_1351,944,157 - 51,954,169 (-)NCBICHM1_1
Pcbp4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.08115,154,848 - 115,165,706 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8115,155,470 - 115,165,706 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.08114,518,974 - 114,529,993 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.48111,597,539 - 111,607,775 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.18111,617,020 - 111,627,230 (+)NCBI
Celera8106,404,965 - 106,415,187 (+)NCBICelera
Cytogenetic Map8q32NCBI
Pcbp4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555323,603,975 - 3,614,290 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555323,604,720 - 3,615,112 (-)NCBIChiLan1.0ChiLan1.0
PCBP4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1353,127,448 - 53,137,292 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl353,127,448 - 53,137,293 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0351,898,857 - 51,908,932 (-)NCBIMhudiblu_PPA_v0panPan3
PCBP4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl2037,748,938 - 37,759,073 (+)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.12037,748,854 - 37,759,072 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Pcbp4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_0049365293,304,171 - 3,308,422 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PCBP4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1334,090,006 - 34,104,696 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11334,090,015 - 34,099,959 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21337,286,561 - 37,296,491 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PCBP4
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1 Ensembl2213,325,551 - 13,329,903 (-)Ensembl
ChlSab1.12213,326,069 - 13,336,474 (-)NCBI
Pcbp4
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247305,776,777 - 5,786,782 (-)NCBI

Position Markers
AW822005  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm389106,452,553 - 106,452,808UniSTSGRCm38
MGSCv379106,354,884 - 106,355,139UniSTSGRCm37
Celera9106,079,718 - 106,079,973UniSTS
Cytogenetic Map9F1UniSTS
Cytogenetic Map9F1-F2UniSTS
Whitehead/MRC_RH91104.08UniSTS
Pcbp4  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm389106,462,213 - 106,463,407UniSTSGRCm38
MGSCv379106,364,544 - 106,365,738UniSTSGRCm37
Celera9106,089,141 - 106,090,308UniSTS
Cytogenetic Map9F1-F2UniSTS
cM Map9 UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301649Psl1_mpromotion susceptibility QTL 1 (mouse)Not determined989412277123412396Mouse
1301725Lifespan1_mlife span 1 (mouse)Not determined974368177108368325Mouse
1301732Char1_mP. chabaudi malaria resistance QTL 1 (mouse)Not determined981798268115798392Mouse
1301484Bwq6_mbody weight (mouse)Not determined993762590124595110Mouse
1301487Nociq1_mnociceptive sensitivity inflammatory QTL 1 (mouse)Not determined984528818118528921Mouse
1301192Skts6_mskin tumor susceptibility 6 (mouse)Not determined978640645112640755Mouse
1301573Etohcta8_methanol conditioned taste aversion 8 (mouse)Not determined972977005106977152Mouse
1302001Bdln5_mbody length 5 (mouse)Not determined993762590124595110Mouse
1302065El1_mepilepsy 1 (mouse)Not determined975775364114474379Mouse
1302103Dob2_mdietary obesity 2 (mouse)Not determined986239845120289624Mouse
1301789Pbwg4_mpostnatal body weight growth 4 (mouse)Not determined9103289445124595110Mouse
1300884Sluc11_msusceptibility to lung cancer 11 (mouse)Not determined982910333116910428Mouse
1357627Tgq2_mtriglyceride QTL 2 (mouse)Not determined9102000187124595110Mouse
1357635Splq4_mspleen weight QTL 4 (mouse)Not determined963332429120362868Mouse
1357648Obq18_mobesity QTL 18 (mouse)Not determined9102000187124595110Mouse
1357657Pymr_mPlasmodium yoelli malaria resistance (mouse)Not determined989977005118938021Mouse
4141545Tailaq2_mtail length adjusted QTL 2 (mouse)Not determined63332429120362868Mouse
1300549Bbaa17_mB. burgdorferi-associated arthritis 17 (mouse)Not determined986230401120230530Mouse
1558767Skmw11_mskeletal muscle weight 11 (mouse)Not determined991641084124595110Mouse
1301407Rapop2_mradiation-induced apoptosis 2 (mouse)Not determined976535936110536130Mouse
1301297Lcho1_mliver cholesterol 1 (mouse)Not determined9101060861124595110Mouse
1357461Idd2_minsulin dependent diabetes susceptibility 2 (mouse)Not determined982910333116910428Mouse
10412290Pvacm1l_mplasma vascular cell adhesion molecule 1 levels (mouse)Not determined9103289445124595110Mouse
10054068El8_mepilepsy 8 (mouse)Not determined972977005106977152Mouse
10401247Bglu14_mblood glucose level 14 (mouse)Not determined979397810113397888Mouse
10054492El7_mepilepsy 7 (mouse)Not determined975775364114474379Mouse
10412180Msam3_mmuscle, skeletal, activity measure 3 (mouse)Not determined985897510108641186Mouse
10412242Alpq8_malcohol preference QTL 8 (mouse)Not determined989284925123284925Mouse
4141833W10q13_mweight 10 weeks QTL 13 (mouse)Not determined63332429120362868Mouse
12904947Tammq7_mtibialis anterior muscle mass QTL 7 (mouse)991683173124595110Mouse
13463474Hbbcq5_mhemoglobin concentration QTL 5 (mouse)991641084124595110Mouse
11081166Psl5_mpromotion susceptibility QTL 5 (mouse)994981301112872929Mouse
13463477Rbc9_mred blood cell count 9 (mouse)991641084124595110Mouse
12910773Splic3_mspleen iron content 3 (mouse)991413879124595110Mouse
11537364Cnes5_mC. neoformans susceptibility locus 5 (mouse)996917590124595110Mouse
14746992Manh67_mmandible shape 67 (mouse)994036768124595110Mouse
12910770Splic1_mspleen iron content 1 (mouse)991413879124595110Mouse
12904937Edlmmq9_mextensor digitorum longus muscle mass QTL 9 (mouse)991683173124595110Mouse
13463478Mchq18_mmean corpuscular hemoglobin QTL 18 (mouse)991641084124595110Mouse
13207569Tcq13_mtotal cholesterol QTL 13 (mouse)959990000109260000Mouse
12910772Lvic6_mliver iron content 6 (mouse)991413879124595110Mouse
10766454Char10_mP. chabaudi malaria resistance QTL 10 (mouse)982910333116910428Mouse
12904961Gmmq7_mgastrocnemius muscle mass QTL 7 (mouse)991683173124595110Mouse
13463480Mchcq2_mmean corpuscular hemoglobin concentration QTL 2 (mouse)991641084124595110Mouse
12879896Berr3_mberghei resistance locus 3 (mouse)9103289445124595110Mouse
18182932Metl3_mmetabolite locus 3, N-acetylglutamate (mouse)989563342123563342Mouse
11251716Siim2_mstress induced immobility 2 (mouse)986748483120748483Mouse
12880422V25Dq6_mvitamin D inactive form serum level QTL 6 (mouse)987800000121800000Mouse
13463475Hctq7_mhematocrit QTL 7 (mouse)991641084124595110Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:300
Count of miRNA genes:203
Interacting mature miRNAs:236
Transcripts:ENSMUST00000024260
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_021567 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006511779 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006511781 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006511782 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006511783 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030244480 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030244481 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030244482 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030244483 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030244484 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC151729 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF176328 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK004580 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK005383 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK077632 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK082005 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK178757 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK179721 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK179793 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK179802 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK179994 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK181953 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK184079 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK187694 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK188206 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK188263 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK188369 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK188891 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK189619 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK190062 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK204800 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK208994 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK210515 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK213562 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK216715 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC010694 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY259572 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CA321789 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466560 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CJ162439 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CJ174803 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CK619549 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000024260   ⟹   ENSMUSP00000024260
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9106,453,842 - 106,464,012 (+)Ensembl
RefSeq Acc Id: ENSMUST00000185507   ⟹   ENSMUSP00000140660
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9106,461,056 - 106,463,549 (+)Ensembl
RefSeq Acc Id: ENSMUST00000185779   ⟹   ENSMUSP00000140629
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9106,453,933 - 106,461,924 (+)Ensembl
RefSeq Acc Id: ENSMUST00000185831
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9106,455,684 - 106,456,439 (+)Ensembl
RefSeq Acc Id: ENSMUST00000185854
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9106,453,407 - 106,460,075 (+)Ensembl
RefSeq Acc Id: ENSMUST00000185874   ⟹   ENSMUSP00000141057
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9106,453,291 - 106,461,094 (+)Ensembl
RefSeq Acc Id: ENSMUST00000185996
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9106,461,743 - 106,462,411 (+)Ensembl
RefSeq Acc Id: ENSMUST00000186519
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9106,453,920 - 106,460,520 (+)Ensembl
RefSeq Acc Id: ENSMUST00000187975
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9106,453,845 - 106,454,836 (+)Ensembl
RefSeq Acc Id: ENSMUST00000188396   ⟹   ENSMUSP00000139771
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9106,461,870 - 106,463,695 (+)Ensembl
RefSeq Acc Id: ENSMUST00000188448
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9106,462,053 - 106,462,670 (+)Ensembl
RefSeq Acc Id: ENSMUST00000189099   ⟹   ENSMUSP00000139991
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9106,460,660 - 106,461,337 (+)Ensembl
RefSeq Acc Id: ENSMUST00000189882
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9106,461,273 - 106,462,161 (+)Ensembl
RefSeq Acc Id: ENSMUST00000190428   ⟹   ENSMUSP00000139587
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9106,461,298 - 106,462,944 (+)Ensembl
RefSeq Acc Id: ENSMUST00000190430   ⟹   ENSMUSP00000140485
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9106,456,097 - 106,461,078 (+)Ensembl
RefSeq Acc Id: ENSMUST00000190799
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9106,460,395 - 106,460,868 (+)Ensembl
RefSeq Acc Id: ENSMUST00000213156   ⟹   ENSMUSP00000149109
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9106,461,059 - 106,463,693 (+)Ensembl
RefSeq Acc Id: ENSMUST00000213201   ⟹   ENSMUSP00000148973
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9106,461,087 - 106,463,484 (+)Ensembl
RefSeq Acc Id: ENSMUST00000213752   ⟹   ENSMUSP00000149974
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9106,461,369 - 106,463,573 (+)Ensembl
RefSeq Acc Id: ENSMUST00000214252   ⟹   ENSMUSP00000148962
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9106,453,899 - 106,462,252 (+)Ensembl
RefSeq Acc Id: ENSMUST00000215656   ⟹   ENSMUSP00000149560
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9106,453,890 - 106,461,924 (+)Ensembl
RefSeq Acc Id: ENSMUST00000216379   ⟹   ENSMUSP00000150869
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9106,453,890 - 106,461,326 (+)Ensembl
RefSeq Acc Id: ENSMUST00000217405
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9106,461,045 - 106,462,554 (+)Ensembl
RefSeq Acc Id: NM_021567   ⟹   NP_067542
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399106,331,037 - 106,341,211 (+)NCBI
GRCm389106,453,838 - 106,464,012 (+)NCBI
MGSCv379106,356,188 - 106,366,343 (+)RGD
Celera9106,080,920 - 106,090,913 (+)RGD
cM Map9 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006511779   ⟹   XP_006511842
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399106,330,181 - 106,341,211 (+)NCBI
GRCm389106,452,982 - 106,464,012 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006511781   ⟹   XP_006511844
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399106,330,931 - 106,341,211 (+)NCBI
GRCm389106,453,820 - 106,464,012 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006511782   ⟹   XP_006511845
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399106,330,931 - 106,339,029 (+)NCBI
GRCm389106,453,819 - 106,461,824 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006511783   ⟹   XP_006511846
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399106,330,931 - 106,339,029 (+)NCBI
GRCm389106,453,819 - 106,461,824 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030244480   ⟹   XP_030100340
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399106,330,187 - 106,341,211 (+)NCBI
GRCm389106,452,988 - 106,464,012 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030244481   ⟹   XP_030100341
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399106,331,019 - 106,341,211 (+)NCBI
GRCm389106,453,821 - 106,464,012 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030244482   ⟹   XP_030100342
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399106,330,227 - 106,341,211 (+)NCBI
GRCm389106,453,175 - 106,464,012 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030244483   ⟹   XP_030100343
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399106,330,555 - 106,341,211 (+)NCBI
GRCm389106,453,356 - 106,464,012 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030244484   ⟹   XP_030100344
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399106,330,219 - 106,341,211 (+)NCBI
GRCm389106,453,028 - 106,464,012 (+)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: NP_067542   ⟸   NM_021567
- UniProtKB: P57724 (UniProtKB/Swiss-Prot),   A0A0R4J044 (UniProtKB/TrEMBL),   Q8BP63 (UniProtKB/TrEMBL),   Q9DB01 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006511842   ⟸   XM_006511779
- Peptide Label: isoform X1
- UniProtKB: P57724 (UniProtKB/Swiss-Prot),   A0A0R4J044 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006511845   ⟸   XM_006511782
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_006511846   ⟸   XM_006511783
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_006511844   ⟸   XM_006511781
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_030100340   ⟸   XM_030244480
- Peptide Label: isoform X1
RefSeq Acc Id: XP_030100344   ⟸   XM_030244484
- Peptide Label: isoform X2
RefSeq Acc Id: XP_030100342   ⟸   XM_030244482
- Peptide Label: isoform X1
RefSeq Acc Id: XP_030100343   ⟸   XM_030244483
- Peptide Label: isoform X1
RefSeq Acc Id: XP_030100341   ⟸   XM_030244481
- Peptide Label: isoform X1
RefSeq Acc Id: ENSMUSP00000140660   ⟸   ENSMUST00000185507
RefSeq Acc Id: ENSMUSP00000141057   ⟸   ENSMUST00000185874
RefSeq Acc Id: ENSMUSP00000140629   ⟸   ENSMUST00000185779
RefSeq Acc Id: ENSMUSP00000140485   ⟸   ENSMUST00000190430
RefSeq Acc Id: ENSMUSP00000139587   ⟸   ENSMUST00000190428
RefSeq Acc Id: ENSMUSP00000149109   ⟸   ENSMUST00000213156
RefSeq Acc Id: ENSMUSP00000148973   ⟸   ENSMUST00000213201
RefSeq Acc Id: ENSMUSP00000139771   ⟸   ENSMUST00000188396
RefSeq Acc Id: ENSMUSP00000149974   ⟸   ENSMUST00000213752
RefSeq Acc Id: ENSMUSP00000150869   ⟸   ENSMUST00000216379
RefSeq Acc Id: ENSMUSP00000149560   ⟸   ENSMUST00000215656
RefSeq Acc Id: ENSMUSP00000024260   ⟸   ENSMUST00000024260
RefSeq Acc Id: ENSMUSP00000148962   ⟸   ENSMUST00000214252
RefSeq Acc Id: ENSMUSP00000139991   ⟸   ENSMUST00000189099
Protein Domains
KH   KH_dom_type_1

Promoters
RGD ID:6844912
Promoter ID:MM_KWN:58669
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6
Transcripts:NM_021567
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv369106,355,421 - 106,356,372 (+)MPROMDB
RGD ID:6848442
Promoter ID:MM_ACW:51908
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain
Transcripts:PCBP4.CSEP07
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv369106,362,841 - 106,363,341 (+)MPROMDB
RGD ID:6844914
Promoter ID:MM_KWN:58670
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain
Transcripts:UC009RJU.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv369106,364,091 - 106,364,591 (+)MPROMDB
RGD ID:8670730
Promoter ID:EPDNEW_M13396
Type:initiation region
Name:Pcbp4_1
Description:Mus musculus poly binding protein 4 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M13397  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm389106,453,890 - 106,453,950EPDNEW
RGD ID:8670732
Promoter ID:EPDNEW_M13397
Type:multiple initiation site
Name:Pcbp4_2
Description:Mus musculus poly binding protein 4 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M13396  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm389106,460,641 - 106,460,701EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1890471 AgrOrtholog
Ensembl Genes ENSMUSG00000023495 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000024260 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUSP00000139587 UniProtKB/TrEMBL
  ENSMUSP00000139771 UniProtKB/TrEMBL
  ENSMUSP00000139991 UniProtKB/TrEMBL
  ENSMUSP00000140485 UniProtKB/TrEMBL
  ENSMUSP00000140629 UniProtKB/TrEMBL
  ENSMUSP00000140660 UniProtKB/TrEMBL
  ENSMUSP00000141057 UniProtKB/TrEMBL
  ENSMUSP00000148962 UniProtKB/TrEMBL
  ENSMUSP00000148973 UniProtKB/TrEMBL
  ENSMUSP00000149109 UniProtKB/TrEMBL
  ENSMUSP00000149560 UniProtKB/TrEMBL
  ENSMUSP00000149974 UniProtKB/TrEMBL
  ENSMUSP00000150869 UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000024260 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUST00000185507 UniProtKB/TrEMBL
  ENSMUST00000185779 UniProtKB/TrEMBL
  ENSMUST00000185874 UniProtKB/TrEMBL
  ENSMUST00000188396 UniProtKB/TrEMBL
  ENSMUST00000189099 UniProtKB/TrEMBL
  ENSMUST00000190428 UniProtKB/TrEMBL
  ENSMUST00000190430 UniProtKB/TrEMBL
  ENSMUST00000213156 UniProtKB/TrEMBL
  ENSMUST00000213201 UniProtKB/TrEMBL
  ENSMUST00000213752 UniProtKB/TrEMBL
  ENSMUST00000214252 UniProtKB/TrEMBL
  ENSMUST00000215656 UniProtKB/TrEMBL
  ENSMUST00000216379 UniProtKB/TrEMBL
Gene3D-CATH 3.30.1370.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro KH_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  KH_dom_type_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  KH_dom_type_1_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PCBP4 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:59092 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:1890471 ENTREZGENE
NCBI Gene 59092 ENTREZGENE
PANTHER PTHR10288:SF166 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam KH_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Pcbp4 PhenoGen
PROSITE KH_TYPE_1 UniProtKB/Swiss-Prot
SMART SM00322 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF54791 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniGene Mm.286394 ENTREZGENE
UniProt A0A087WP16_MOUSE UniProtKB/TrEMBL
  A0A087WPG7_MOUSE UniProtKB/TrEMBL
  A0A087WQ06_MOUSE UniProtKB/TrEMBL
  A0A087WR61_MOUSE UniProtKB/TrEMBL
  A0A087WRH3_MOUSE UniProtKB/TrEMBL
  A0A087WRJ6_MOUSE UniProtKB/TrEMBL
  A0A087WSI1_MOUSE UniProtKB/TrEMBL
  A0A0R4J044 ENTREZGENE, UniProtKB/TrEMBL
  A0A1L1SQ99_MOUSE UniProtKB/TrEMBL
  A0A1L1SQB0_MOUSE UniProtKB/TrEMBL
  A0A1L1SQL8_MOUSE UniProtKB/TrEMBL
  A0A1L1SRP9_MOUSE UniProtKB/TrEMBL
  A0A1L1SSM1_MOUSE UniProtKB/TrEMBL
  A0A1L1SUS5_MOUSE UniProtKB/TrEMBL
  P57724 ENTREZGENE, UniProtKB/Swiss-Prot
  Q8BP63 ENTREZGENE, UniProtKB/TrEMBL
  Q9DB01 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary Q91VR3 UniProtKB/Swiss-Prot