Kntc1 (kinetochore associated 1) - Rat Genome Database

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Gene: Kntc1 (kinetochore associated 1) Mus musculus
Analyze
Symbol: Kntc1
Name: kinetochore associated 1
RGD ID: 1317370
MGI Page MGI
Description: Predicted to enable small GTPase binding activity. Predicted to be involved in mitotic sister chromatid segregation; mitotic spindle assembly checkpoint signaling; and protein localization to kinetochore involved in kinetochore assembly. Predicted to act upstream of or within cell division. Predicted to be located in cytoskeleton; cytosol; and plasma membrane. Predicted to be part of RZZ complex. Predicted to be active in cytoplasm and kinetochore microtubule. Is expressed in several structures, including alimentary system; brain; genitourinary system; lung; and spleen. Orthologous to human KNTC1 (kinetochore associated 1).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: D330012D13; jg; jgl; kinetochore-associated protein 1
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395123,887,755 - 123,959,656 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5123,887,779 - 123,959,656 (+)EnsemblGRCm39 Ensembl
GRCm385123,749,692 - 123,821,593 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5123,749,716 - 123,821,593 (+)EnsemblGRCm38mm10GRCm38
MGSCv375124,199,735 - 124,271,602 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365124,010,057 - 124,082,211 (+)NCBIMGSCv36mm8
Celera5120,826,139 - 120,897,375 (+)NCBICelera
Cytogenetic Map5FNCBI
cM Map563.17NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-catechin  (ISO)
(-)-epigallocatechin 3-gallate  (ISO)
1,1-dichloroethene  (EXP)
1-naphthyl isothiocyanate  (ISO)
17beta-estradiol  (ISO)
2,2',4,4',5,5'-hexachlorobiphenyl  (EXP)
2,2',5,5'-tetrachlorobiphenyl  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2-palmitoylglycerol  (ISO)
3-methylcholanthrene  (EXP)
6-propyl-2-thiouracil  (ISO)
acetamide  (ISO)
acrylamide  (ISO)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
aristolochic acid A  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (ISO)
atrazine  (ISO)
azathioprine  (ISO)
benzo[a]pyrene  (EXP,ISO)
benzo[a]pyrene diol epoxide I  (ISO)
benzo[b]fluoranthene  (EXP)
bisphenol A  (ISO)
buta-1,3-diene  (EXP)
butanal  (ISO)
caffeine  (ISO)
calcitriol  (ISO)
carbamazepine  (ISO)
carbon nanotube  (EXP)
cefaloridine  (ISO)
cobalt dichloride  (ISO)
copper(II) sulfate  (ISO)
coumestrol  (ISO)
Cuprizon  (ISO)
cyclosporin A  (ISO)
decabromodiphenyl ether  (ISO)
dicrotophos  (ISO)
doxorubicin  (EXP)
folic acid  (ISO)
furan  (ISO)
geraniol  (ISO)
isobutanol  (ISO)
ivermectin  (ISO)
lead(0)  (ISO)
lidocaine  (ISO)
methamphetamine  (ISO)
N-Nitrosopyrrolidine  (ISO)
oxaliplatin  (ISO)
ozone  (EXP)
paracetamol  (ISO)
PCB138  (EXP)
phenobarbital  (EXP)
pirinixic acid  (EXP)
potassium chromate  (ISO)
pregnenolone 16alpha-carbonitrile  (EXP)
propanal  (ISO)
resveratrol  (ISO)
rotenone  (ISO)
senecionine  (ISO)
Senkirkine  (ISO)
silicon dioxide  (EXP)
sodium arsenite  (EXP,ISO)
sunitinib  (ISO)
tert-butyl hydroperoxide  (ISO)
testosterone  (ISO)
tetrachloromethane  (EXP)
thioacetamide  (ISO)
titanium dioxide  (EXP,ISO)
topotecan  (ISO)
trimellitic anhydride  (EXP)
troglitazone  (ISO)
trovafloxacin  (EXP)
urethane  (ISO)
valproic acid  (EXP,ISO)
zaragozic acid A  (EXP,ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. MGDs mouse GO annotations MGD data from the GO Consortium
2. Mouse MP Annotation Import Pipeline RGD automated import pipeline
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:12520002   PMID:14610273   PMID:15368895   PMID:16141072   PMID:16141073  
PMID:18799693   PMID:20178780   PMID:21267068   PMID:21565611   PMID:21873635   PMID:24194600   PMID:24457600   PMID:25917818   PMID:32325033   PMID:32554809   PMID:34321999   PMID:36114006  


Genomics

Comparative Map Data
Kntc1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395123,887,755 - 123,959,656 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5123,887,779 - 123,959,656 (+)EnsemblGRCm39 Ensembl
GRCm385123,749,692 - 123,821,593 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5123,749,716 - 123,821,593 (+)EnsemblGRCm38mm10GRCm38
MGSCv375124,199,735 - 124,271,602 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365124,010,057 - 124,082,211 (+)NCBIMGSCv36mm8
Celera5120,826,139 - 120,897,375 (+)NCBICelera
Cytogenetic Map5FNCBI
cM Map563.17NCBI
KNTC1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3812122,527,249 - 122,626,396 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl12122,527,246 - 122,626,396 (+)EnsemblGRCh38hg38GRCh38
GRCh3712123,011,796 - 123,110,943 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3612121,577,762 - 121,676,900 (+)NCBINCBI36Build 36hg18NCBI36
Build 3412121,536,688 - 121,635,826NCBI
Celera12122,603,808 - 122,703,457 (+)NCBICelera
Cytogenetic Map12q24.31NCBI
HuRef12119,972,346 - 120,071,310 (+)NCBIHuRef
CHM1_112122,980,095 - 123,079,246 (+)NCBICHM1_1
T2T-CHM13v2.012122,522,498 - 122,621,883 (+)NCBIT2T-CHM13v2.0
Kntc1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81238,429,925 - 38,500,564 (-)NCBIGRCr8
mRatBN7.21232,769,020 - 32,839,617 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1232,769,020 - 32,839,561 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1233,947,524 - 34,018,036 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01234,558,878 - 34,629,387 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01233,610,753 - 33,681,265 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01238,200,463 - 38,274,162 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1238,200,463 - 38,274,036 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01240,072,618 - 40,146,664 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41233,906,847 - 33,977,070 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11233,770,234 - 33,838,191 (-)NCBI
Celera1234,454,628 - 34,525,016 (-)NCBICelera
Cytogenetic Map12q15-q16NCBI
Kntc1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554826,043,456 - 6,115,816 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554826,040,964 - 6,119,814 (-)NCBIChiLan1.0ChiLan1.0
KNTC1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v210130,619,040 - 130,717,739 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan112130,615,416 - 130,714,115 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v012120,129,557 - 120,228,384 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.112124,351,508 - 124,448,624 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl12124,351,508 - 124,448,624 (+)Ensemblpanpan1.1panPan2
KNTC1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1266,777,667 - 6,867,798 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl266,777,383 - 6,865,016 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha266,949,518 - 7,027,944 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0267,038,832 - 7,118,419 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl267,039,041 - 7,118,276 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1266,970,904 - 7,049,409 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0267,064,422 - 7,142,689 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0267,018,155 - 7,097,743 (-)NCBIUU_Cfam_GSD_1.0
Kntc1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118157,455,196 - 157,543,715 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365581,937,048 - 2,016,447 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365581,936,946 - 2,016,474 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
KNTC1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1430,153,702 - 30,241,829 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11430,154,918 - 30,241,988 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21431,905,350 - 31,985,822 (+)NCBISscrofa10.2Sscrofa10.2susScr3
KNTC1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.111117,866,814 - 117,966,297 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl11117,869,711 - 117,963,907 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037127,355,819 - 127,456,232 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Kntc1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474722,669,297 - 22,758,226 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474722,667,872 - 22,758,411 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Kntc1
2203 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:54
Count of miRNA genes:51
Interacting mature miRNAs:53
Transcripts:ENSMUST00000031366
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
11341716Rvfs3_mRift Valley fever susceptibility 3 (mouse)526441234138455402Mouse
4142064Tmc1m4_mTmc1 modifier 4 (mouse)Not determined554500177127001072Mouse
26884395Humsd2_mhumerus midshaft diameter 2, 10 week (mouse)570057343132528839Mouse
27226719Tibw6_mtibia width 6, proximal, 16 week (mouse)572857343139985755Mouse
25314315Mlh1fc4_mMLH1 foci count 4 (mouse)574460661132528839Mouse
13506928Recrq8_mrecombination rate in male meiosis QTL 8 (mouse)574460661132528839Mouse
1300968Skts4_mskin tumor susceptibility 4 (mouse)Not determined589418876124238239Mouse
1301362Prnr1_mprion resistance 1 (mouse)Not determined589418876146787935Mouse
11049562Lmr24f_mleishmaniasis resistance 24f (mouse)590320962124321041Mouse
1301457Cfsw2_mcystic fibrosis survival to weaning 2 (mouse)Not determined590561006124561151Mouse
1300993Hycdc_mhypercapnic duty cycle (mouse)Not determined590561006124561151Mouse
9587780Afw16_mabdominal fat weight QTL 16 (mouse)Not determined592830166126830285Mouse
1301974Chab7_mcholesterol absorption 7 (mouse)Not determined595233214129233330Mouse
1357644Egrd1_mearly growth rate, direct effect 1 (mouse)Not determined595434580129434786Mouse
10402486Dipa1_mdrug induced psychomotor activation 1 (mouse)Not determined595465549129465722Mouse
13464244Ahl19_mage related hearing loss, early onset 19 (mouse)595465549129465722Mouse
1558774Lith17_mlithogenic gene 17 (mouse)Not determined595465549129465722Mouse
1300940Actd3_mactivity-distance traveled 3 (mouse)Not determined596320385130320533Mouse
1300659Pcd8ts1_mp-glycoprotein positive CD8 T cell subset 1 (mouse)Not determined597021753131021986Mouse
1301858Smdq1_msegregation of mitochondrial DNA QTL 1 (mouse)Not determined597021753131021986Mouse
4141519Hmtb5_mhemostasis and thrombosis bleeding time 5 (mouse)Not determined99949422126882944Mouse
12904945Tammq2_mtibialis anterior muscle mass QTL 2 (mouse)5100665965134665965Mouse
12904959Smmq1_msoleus muscle mass QTL 1 (mouse)5100665965134665965Mouse
12859290Criq2_mCitrobacter rodentium infection QTL 2 (mouse)5101332579135332579Mouse
1301624Aevm2_mautoimmune extremity vasculitis in MRL mice 2 (mouse)Not determined5101863832135864028Mouse
14746986Manh58_mmandible shape 58 (mouse)5102446283136446283Mouse
11532736Sluc33b_msusceptibility to lung cancer 33b (mouse)5102945037136945196Mouse
10412202Bbaa26_mB.burgdorferi-associated arthritis 26 (mouse)Not determined5104583688138555455Mouse
10412239Alpq7_malcohol preference QTL 7 (mouse)Not determined5104705939138705939Mouse
10043890Trigq4_mtriglyceride QTL 4 (mouse)Not determined5107906299141906412Mouse
4142473Chlq11_mcirculating hormone level QTL 11 (mouse)Not determined5107906299141906412Mouse
13464243Ahl20_mage related hearing loss, early onset 20 (mouse)5107906299141906412Mouse
4141139Hmtb4_mhemostasis and thrombosis rebleeding time 4 (mouse)Not determined108762509126882944Mouse
10412197Bbaa25_mB.burgdorferi-associated arthritis 25 (mouse)Not determined5109167240143167381Mouse
13464251Ahl21_mage related hearing loss, early onset 21 (mouse)5109167240143167381Mouse
1301543Hypch_mhypercholesterolemia (mouse)Not determined5109238624139118905Mouse
1300913Bwefm_mbody weight females and males day 10 (mouse)Not determined5109439348143439459Mouse
1301102Cia14_mcollagen induced arthritis 14 (mouse)Not determined5113320385138555455Mouse
1357662Lprq4_mlipoprotein QTL 4 (mouse)Not determined5114021753129632606Mouse
1301226Bbaa2_mB.burgdorferi-associated arthritis 2 (mouse)Not determined5115156883149157015Mouse
1300827Cora1_mcorrelation in cytokine production 1 (mouse)Not determined5115156883149157015Mouse
1301857Bglq14_mbody growth late QTL 14 (mouse)Not determined5118948964151758149Mouse
10412191Bbaa24_mB.burgdorferi-associated arthritis 24 (mouse)Not determined5119945037141700466Mouse
4141081Nidd7k_mNidd7 on KK-A (mouse)Not determined119945037149347326Mouse
11528552Scram1_mspinal cord resistance to astrocytoma modifier 1 (mouse)5121455402151758149Mouse
1301986Bpq4_mblood pressure QTL 4 (mouse)Not determined5121555236151758149Mouse


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000031366   ⟹   ENSMUSP00000031366
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5123,887,789 - 123,959,656 (+)Ensembl
GRCm38.p6 Ensembl5123,749,726 - 123,821,593 (+)Ensembl
RefSeq Acc Id: ENSMUST00000197002
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5123,957,610 - 123,959,655 (+)Ensembl
GRCm38.p6 Ensembl5123,819,547 - 123,821,592 (+)Ensembl
RefSeq Acc Id: ENSMUST00000197265   ⟹   ENSMUSP00000142523
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5123,949,456 - 123,959,654 (+)Ensembl
GRCm38.p6 Ensembl5123,811,393 - 123,821,591 (+)Ensembl
RefSeq Acc Id: ENSMUST00000197665
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5123,910,847 - 123,917,704 (+)Ensembl
GRCm38.p6 Ensembl5123,772,784 - 123,779,641 (+)Ensembl
RefSeq Acc Id: ENSMUST00000198716
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5123,925,275 - 123,928,189 (+)Ensembl
GRCm38.p6 Ensembl5123,787,212 - 123,790,126 (+)Ensembl
RefSeq Acc Id: ENSMUST00000198841   ⟹   ENSMUSP00000143142
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5123,919,251 - 123,920,141 (+)Ensembl
GRCm38.p6 Ensembl5123,781,188 - 123,782,078 (+)Ensembl
RefSeq Acc Id: ENSMUST00000199838
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5123,887,779 - 123,892,123 (+)Ensembl
GRCm38.p6 Ensembl5123,749,716 - 123,754,060 (+)Ensembl
RefSeq Acc Id: NM_001042421   ⟹   NP_001035886
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395123,887,789 - 123,959,656 (+)NCBI
GRCm385123,749,726 - 123,821,593 (+)NCBI
MGSCv375124,199,735 - 124,271,602 (+)RGD
Celera5120,826,139 - 120,897,375 (+)RGD
cM Map5 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006530250   ⟹   XP_006530313
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395123,887,759 - 123,950,066 (+)NCBI
GRCm385123,749,696 - 123,812,003 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006530251   ⟹   XP_006530314
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395123,917,752 - 123,959,656 (+)NCBI
GRCm385123,779,689 - 123,821,593 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006530252   ⟹   XP_006530315
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395123,887,756 - 123,934,176 (+)NCBI
GRCm385123,749,693 - 123,796,115 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006530253   ⟹   XP_006530316
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395123,887,755 - 123,929,562 (+)NCBI
GRCm385123,749,692 - 123,791,501 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006530254   ⟹   XP_006530317
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395123,919,975 - 123,959,656 (+)NCBI
GRCm385123,781,912 - 123,821,593 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030254330   ⟹   XP_030110190
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395123,887,760 - 123,959,656 (+)NCBI
GRCm385123,749,697 - 123,821,593 (+)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_001035886   ⟸   NM_001042421
- UniProtKB: Q6A0B3 (UniProtKB/Swiss-Prot),   Q8C3Y4 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006530315   ⟸   XM_006530252
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_006530316   ⟸   XM_006530253
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_006530313   ⟸   XM_006530250
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_006530314   ⟸   XM_006530251
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_006530317   ⟸   XM_006530254
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: XP_030110190   ⟸   XM_030254330
- Peptide Label: isoform X1
RefSeq Acc Id: ENSMUSP00000143142   ⟸   ENSMUST00000198841
RefSeq Acc Id: ENSMUSP00000142523   ⟸   ENSMUST00000197265
RefSeq Acc Id: ENSMUSP00000031366   ⟸   ENSMUST00000031366
Protein Domains
RZZ complex subunit KNTC1/ROD C-terminal

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8C3Y4-F1-model_v2 AlphaFold Q8C3Y4 1-2207 view protein structure

Promoters
RGD ID:6888048
Promoter ID:EPDNEW_M7475
Type:multiple initiation site
Name:Kntc1_1
Description:Mus musculus kinetochore associated 1 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm385123,749,726 - 123,749,786EPDNEW
RGD ID:6838278
Promoter ID:MM_KWN:44055
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:NM_001005523,   NM_001005525,   NM_001042421,   NM_025438,   UC008ZOM.1,   UC008ZON.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv365124,198,556 - 124,199,467 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2673709 AgrOrtholog
Ensembl Genes ENSMUSG00000029414 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000031366 ENTREZGENE
  ENSMUST00000031366.12 UniProtKB/Swiss-Prot
  ENSMUST00000197265.2 UniProtKB/TrEMBL
  ENSMUST00000198841.2 UniProtKB/TrEMBL
InterPro RZZ-complex_KNTC1/ROD_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WD40_repeat_dom_sf UniProtKB/Swiss-Prot
KEGG Report mmu:208628 UniProtKB/Swiss-Prot
MGD MGI:2673709 ENTREZGENE
NCBI Gene 208628 ENTREZGENE
PANTHER KINETOCHORE-ASSOCIATED PROTEIN 1 UniProtKB/Swiss-Prot
  KINETOCHORE-ASSOCIATED PROTEIN 1 UniProtKB/Swiss-Prot
  KINETOCHORE-ASSOCIATED PROTEIN 1 UniProtKB/TrEMBL
  KINETOCHORE-ASSOCIATED PROTEIN 1 UniProtKB/TrEMBL
Pfam Rod_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Kntc1 PhenoGen
Superfamily-SCOP SSF50978 UniProtKB/Swiss-Prot
UniProt A0A0G2JDV5_MOUSE UniProtKB/TrEMBL
  A0A0G2JFE7_MOUSE UniProtKB/TrEMBL
  KNTC1_MOUSE UniProtKB/Swiss-Prot
  Q6A0B3 ENTREZGENE
  Q8C3Y4 ENTREZGENE
UniProt Secondary Q6A0B3 UniProtKB/Swiss-Prot