Rrp9 (ribosomal RNA processing 9, U3 small nucleolar RNA binding protein) - Rat Genome Database
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Gene: Rrp9 (ribosomal RNA processing 9, U3 small nucleolar RNA binding protein) Mus musculus
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Symbol: Rrp9
Name: ribosomal RNA processing 9, U3 small nucleolar RNA binding protein
RGD ID: 1317333
MGI Page MGI
Description: Predicted to contribute to U3 snoRNA binding activity. Predicted to be involved in rRNA processing. Predicted to localize to box C/D snoRNP complex and small-subunit processome. Is expressed in embryo and extraembryonic component. Orthologous to human RRP9 (ribosomal RNA processing 9, U3 small nucleolar RNA binding protein); INTERACTS WITH 1,2-dimethylhydrazine; 17alpha-ethynylestradiol; 17beta-estradiol.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: 55kD; 55kDa; D19435; D9Wsu10; D9Wsu10e; MGC25949; RNA, U3 small nucleolar interacting protein 2; Rnu; Rnu3ip2; RRP9 homolog; RRP9, small subunit (SSU) processome component, homolog; RRP9, small subunit (SSU) processome component, homolog (yeast); U3 small nucleolar ribonucleoprotein-associated 55 kDa protein; U3 small nucleolar RNA-interacting protein 2; U3 snoRNP-associated 55 kDa protein; U3 snoRNP-associated 55-kDa protein; U3 snoRNP-associated protein; U3-55k
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399106,354,508 - 106,362,614 (+)NCBIGRCm39mm39
GRCm389106,477,309 - 106,485,415 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9106,475,963 - 106,485,424 (+)EnsemblGRCm38mm10GRCm38
MGSCv379106,379,640 - 106,387,746 (+)NCBIGRCm37mm9NCBIm37
MGSCv369106,335,410 - 106,343,516 (+)NCBImm8
Celera9106,104,204 - 106,112,359 (+)NCBICelera
Cytogenetic Map9F1NCBI
cM Map957.59NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

Additional References at PubMed
PMID:10349636   PMID:10725249   PMID:11042159   PMID:11076861   PMID:11487633   PMID:12448766   PMID:12477932   PMID:12520002   PMID:14610273   PMID:15489334   PMID:15761153   PMID:16141072  
PMID:16141073   PMID:21267068   PMID:21677750   PMID:21873635   PMID:22922362   PMID:24457600   PMID:26336360   PMID:30196744  


Genomics

Comparative Map Data
Rrp9
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399106,354,508 - 106,362,614 (+)NCBIGRCm39mm39
GRCm389106,477,309 - 106,485,415 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9106,475,963 - 106,485,424 (+)EnsemblGRCm38mm10GRCm38
MGSCv379106,379,640 - 106,387,746 (+)NCBIGRCm37mm9NCBIm37
MGSCv369106,335,410 - 106,343,516 (+)NCBImm8
Celera9106,104,204 - 106,112,359 (+)NCBICelera
Cytogenetic Map9F1NCBI
cM Map957.59NCBI
RRP9
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl351,933,429 - 51,941,904 (-)EnsemblGRCh38hg38GRCh38
GRCh38351,933,429 - 51,941,904 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37351,967,442 - 51,975,957 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36351,942,486 - 51,950,962 (-)NCBINCBI36hg18NCBI36
Build 34351,942,485 - 51,950,962NCBI
Celera351,946,271 - 51,954,747 (-)NCBI
Cytogenetic Map3p21.2NCBI
HuRef352,030,781 - 52,039,295 (-)NCBIHuRef
CHM1_1351,920,131 - 51,928,646 (-)NCBICHM1_1
Rrp9
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.08115,179,899 - 115,188,551 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8115,179,893 - 115,188,588 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.08114,544,186 - 114,552,838 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.48111,621,968 - 111,630,963 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.18111,641,420 - 111,650,409 (+)NCBI
Celera8106,429,368 - 106,438,021 (+)NCBICelera
Cytogenetic Map8q32NCBI
Rrp9
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555323,581,417 - 3,591,271 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555323,584,111 - 3,591,234 (-)NCBIChiLan1.0ChiLan1.0
RRP9
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1353,103,621 - 53,112,127 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl353,103,621 - 53,112,127 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0351,874,829 - 51,883,339 (-)NCBIMhudiblu_PPA_v0panPan3
RRP9
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl2037,774,516 - 37,784,191 (+)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.12037,774,477 - 37,785,203 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Rrp9
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_0049365293,281,991 - 3,291,049 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RRP9
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1334,067,520 - 34,075,430 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11334,067,517 - 34,075,425 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21337,264,060 - 37,271,970 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RRP9
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12213,301,525 - 13,310,132 (-)NCBI
ChlSab1.1 Ensembl2213,300,799 - 13,310,137 (-)Ensembl
Rrp9
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247305,752,201 - 5,761,501 (-)NCBI

Position Markers
UniSTS:224257  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm389106,485,335 - 106,485,409UniSTSGRCm38
MGSCv379106,387,666 - 106,387,740UniSTSGRCm37
Celera9106,112,279 - 106,112,353UniSTS
Cytogenetic Map9F1UniSTS
cM Map956.0UniSTS
RH125696  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm389106,485,075 - 106,485,353UniSTSGRCm38
MGSCv379106,387,406 - 106,387,684UniSTSGRCm37
Celera9106,112,019 - 106,112,297UniSTS
Cytogenetic Map9F1UniSTS
cM Map956.0UniSTS
Whitehead/MRC_RH91099.71UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
12904947Tammq7_mtibialis anterior muscle mass QTL 7 (mouse)991683173124595110Mouse
13463474Hbbcq5_mhemoglobin concentration QTL 5 (mouse)991641084124595110Mouse
10054068El8_mepilepsy 8 (mouse)Not determined972977005106977152Mouse
1357461Idd2_minsulin dependent diabetes susceptibility 2 (mouse)Not determined982910333116910428Mouse
11081166Psl5_mpromotion susceptibility QTL 5 (mouse)994981301112872929Mouse
1357627Tgq2_mtriglyceride QTL 2 (mouse)Not determined9102000187124595110Mouse
1301192Skts6_mskin tumor susceptibility 6 (mouse)Not determined978640645112640755Mouse
13463477Rbc9_mred blood cell count 9 (mouse)991641084124595110Mouse
1357635Splq4_mspleen weight QTL 4 (mouse)Not determined963332429120362868Mouse
1300549Bbaa17_mB. burgdorferi-associated arthritis 17 (mouse)Not determined986230401120230530Mouse
1558767Skmw11_mskeletal muscle weight 11 (mouse)Not determined991641084124595110Mouse
12910773Splic3_mspleen iron content 3 (mouse)991413879124595110Mouse
11537364Cnes5_mC. neoformans susceptibility locus 5 (mouse)996917590124595110Mouse
14746992Manh67_mmandible shape 67 (mouse)994036768124595110Mouse
4141545Tailaq2_mtail length adjusted QTL 2 (mouse)Not determined63332429120362868Mouse
1301732Char1_mP. chabaudi malaria resistance QTL 1 (mouse)Not determined981798268115798392Mouse
1301407Rapop2_mradiation-induced apoptosis 2 (mouse)Not determined976535936110536130Mouse
1301725Lifespan1_mlife span 1 (mouse)Not determined974368177108368325Mouse
1357648Obq18_mobesity QTL 18 (mouse)Not determined9102000187124595110Mouse
1301297Lcho1_mliver cholesterol 1 (mouse)Not determined9101060861124595110Mouse
12910770Splic1_mspleen iron content 1 (mouse)991413879124595110Mouse
1301573Etohcta8_methanol conditioned taste aversion 8 (mouse)Not determined972977005106977152Mouse
12904937Edlmmq9_mextensor digitorum longus muscle mass QTL 9 (mouse)991683173124595110Mouse
4141833W10q13_mweight 10 weeks QTL 13 (mouse)Not determined63332429120362868Mouse
13463478Mchq18_mmean corpuscular hemoglobin QTL 18 (mouse)991641084124595110Mouse
13207569Tcq13_mtotal cholesterol QTL 13 (mouse)959990000109260000Mouse
1302001Bdln5_mbody length 5 (mouse)Not determined993762590124595110Mouse
10054492El7_mepilepsy 7 (mouse)Not determined975775364114474379Mouse
12910772Lvic6_mliver iron content 6 (mouse)991413879124595110Mouse
1302103Dob2_mdietary obesity 2 (mouse)Not determined986239845120289624Mouse
10412290Pvacm1l_mplasma vascular cell adhesion molecule 1 levels (mouse)Not determined9103289445124595110Mouse
10766454Char10_mP. chabaudi malaria resistance QTL 10 (mouse)982910333116910428Mouse
1357657Pymr_mPlasmodium yoelli malaria resistance (mouse)Not determined989977005118938021Mouse
10412242Alpq8_malcohol preference QTL 8 (mouse)Not determined989284925123284925Mouse
12904961Gmmq7_mgastrocnemius muscle mass QTL 7 (mouse)991683173124595110Mouse
13463480Mchcq2_mmean corpuscular hemoglobin concentration QTL 2 (mouse)991641084124595110Mouse
12879896Berr3_mberghei resistance locus 3 (mouse)9103289445124595110Mouse
10401247Bglu14_mblood glucose level 14 (mouse)Not determined979397810113397888Mouse
1300884Sluc11_msusceptibility to lung cancer 11 (mouse)Not determined982910333116910428Mouse
1302065El1_mepilepsy 1 (mouse)Not determined975775364114474379Mouse
1301789Pbwg4_mpostnatal body weight growth 4 (mouse)Not determined9103289445124595110Mouse
18182932Metl3_mmetabolite locus 3, N-acetylglutamate (mouse)989563342123563342Mouse
11251716Siim2_mstress induced immobility 2 (mouse)986748483120748483Mouse
12880422V25Dq6_mvitamin D inactive form serum level QTL 6 (mouse)987800000121800000Mouse
1301487Nociq1_mnociceptive sensitivity inflammatory QTL 1 (mouse)Not determined984528818118528921Mouse
10412180Msam3_mmuscle, skeletal, activity measure 3 (mouse)Not determined985897510108641186Mouse
1301649Psl1_mpromotion susceptibility QTL 1 (mouse)Not determined989412277123412396Mouse
1301484Bwq6_mbody weight (mouse)Not determined993762590124595110Mouse
13463475Hctq7_mhematocrit QTL 7 (mouse)991641084124595110Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:994
Count of miRNA genes:497
Interacting mature miRNAs:591
Transcripts:ENSMUST00000047721, ENSMUST00000123464, ENSMUST00000125630, ENSMUST00000127400, ENSMUST00000131618, ENSMUST00000156796
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000047721   ⟹   ENSMUSP00000038580
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9106,477,269 - 106,485,424 (+)Ensembl
RefSeq Acc Id: ENSMUST00000123464
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9106,475,963 - 106,481,873 (+)Ensembl
RefSeq Acc Id: ENSMUST00000125630
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9106,477,318 - 106,485,416 (+)Ensembl
RefSeq Acc Id: ENSMUST00000127400
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9106,477,330 - 106,477,989 (+)Ensembl
RefSeq Acc Id: ENSMUST00000131618
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9106,484,464 - 106,485,424 (+)Ensembl
RefSeq Acc Id: ENSMUST00000156796
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9106,480,800 - 106,481,649 (+)Ensembl
RefSeq Acc Id: ENSMUST00000185336   ⟹   ENSMUSP00000140949
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9106,483,854 - 106,485,422 (+)Ensembl
RefSeq Acc Id: ENSMUST00000217303
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9106,477,725 - 106,483,197 (+)Ensembl
RefSeq Acc Id: NM_145620   ⟹   NP_663595
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399106,354,508 - 106,362,614 (+)NCBI
GRCm389106,477,309 - 106,485,415 (+)NCBI
MGSCv379106,379,640 - 106,387,746 (+)RGD
Celera9106,104,204 - 106,112,359 (+)RGD
cM Map9 ENTREZGENE
Sequence:
Reference Sequences
RefSeq Acc Id: NP_663595   ⟸   NM_145620
- UniProtKB: Q91WM3 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSMUSP00000140949   ⟸   ENSMUST00000185336
RefSeq Acc Id: ENSMUSP00000038580   ⟸   ENSMUST00000047721

Promoters
RGD ID:6845106
Promoter ID:MM_KWN:58674
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:MEF_B6
Transcripts:OTTMUST00000084577
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv369106,377,521 - 106,378,021 (+)MPROMDB
RGD ID:6844087
Promoter ID:MM_KWN:58675
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day3,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000112479,   OTTMUST00000084574,   OTTMUST00000084575,   OTTMUST00000084576,   OTTMUST00000084583,   OTTMUST00000084585,   OTTMUST00000084587,   OTTMUST00000084588,   OTTMUST00000084589,   UC009RJX.1,   UC009RKA.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv369106,378,521 - 106,379,732 (-)MPROMDB
RGD ID:6845108
Promoter ID:MM_KWN:58676
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain
Transcripts:OTTMUST00000084578
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv369106,381,901 - 106,382,401 (+)MPROMDB
RGD ID:8670740
Promoter ID:EPDNEW_M13401
Type:initiation region
Name:Rrp9_1
Description:Mus musculus RRP9, small subunit processome component, homolog, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm389106,477,321 - 106,477,381EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2384313 AgrOrtholog
Ensembl Genes ENSMUSG00000041506 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000038580 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000140949 UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000047721 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000185336 UniProtKB/TrEMBL
Gene3D-CATH 2.130.10.10 UniProtKB/Swiss-Prot
InterPro G-protein_beta_WD-40_rep UniProtKB/Swiss-Prot
  Rrp9-like UniProtKB/Swiss-Prot
  WD40/YVTN_repeat-like_dom_sf UniProtKB/Swiss-Prot
  WD40_repeat UniProtKB/Swiss-Prot
  WD40_repeat_CS UniProtKB/Swiss-Prot
  WD40_repeat_dom UniProtKB/Swiss-Prot
  WD40_repeat_dom_sf UniProtKB/Swiss-Prot
KEGG Report mmu:27966 UniProtKB/Swiss-Prot
MGD MGI:2384313 ENTREZGENE
NCBI Gene 27966 ENTREZGENE
PANTHER PTHR19865 UniProtKB/Swiss-Prot
Pfam WD40 UniProtKB/Swiss-Prot
PhenoGen Rrp9 PhenoGen
PRINTS GPROTEINBRPT UniProtKB/Swiss-Prot
PROSITE WD_REPEATS_1 UniProtKB/Swiss-Prot
  WD_REPEATS_2 UniProtKB/Swiss-Prot
  WD_REPEATS_REGION UniProtKB/Swiss-Prot
SMART WD40 UniProtKB/Swiss-Prot
Superfamily-SCOP SSF50978 UniProtKB/Swiss-Prot
UniGene Mm.239997 ENTREZGENE
UniProt A0A087WS95_MOUSE UniProtKB/TrEMBL
  Q91WM3 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary Q8CFB7 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-09-01 Rrp9  ribosomal RNA processing 9, U3 small nucleolar RNA binding protein  Rrp9  RRP9, small subunit (SSU) processome component, homolog (yeast)  Symbol and/or name change 5135510 APPROVED