Sema4b (sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B) - Rat Genome Database

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Gene: Sema4b (sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B) Mus musculus
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Symbol: Sema4b
Name: sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B
RGD ID: 1317318
MGI Page MGI
Description: Predicted to enable chemorepellent activity; neuropilin binding activity; and semaphorin receptor binding activity. Predicted to be involved in several processes, including axon guidance; neural crest cell migration; and semaphorin-plexin signaling pathway. Located in plasma membrane and synapse. Is active in glutamatergic synapse and postsynaptic density membrane. Is expressed in several structures, including back musculature; central nervous system; peripheral nervous system ganglion; and retina. Orthologous to human SEMA4B (semaphorin 4B).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: KIAA1745; mKIAA1745; Sem; sema C; Semac; semaphorin-4B; semaphorin-C; SemC
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39779,836,618 - 79,876,394 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl779,836,589 - 79,876,275 (+)EnsemblGRCm39 Ensembl
GRCm38780,186,870 - 80,226,646 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl780,186,841 - 80,226,527 (+)EnsemblGRCm38mm10GRCm38
MGSCv37787,331,727 - 87,371,410 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36780,072,038 - 80,099,907 (+)NCBIMGSCv36mm8
Celera777,588,064 - 77,627,863 (+)NCBICelera
Cytogenetic Map7D2NCBI
cM Map745.51NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. MGDs mouse GO annotations MGD data from the GO Consortium
2. Mouse MP Annotation Import Pipeline RGD automated import pipeline
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:7748561   PMID:7748562   PMID:8812066   PMID:8969198   PMID:9288753   PMID:10318831   PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12435358   PMID:12466851  
PMID:12520002   PMID:12904583   PMID:14610273   PMID:15051154   PMID:15368895   PMID:15869472   PMID:15978582   PMID:16141072   PMID:16141073   PMID:16284245   PMID:16602821   PMID:17145500  
PMID:17409257   PMID:17967808   PMID:18799693   PMID:21122816   PMID:21267068   PMID:21270411   PMID:21677750   PMID:21873635   PMID:24572910   PMID:24952961   PMID:25826454   PMID:25892012  
PMID:26464987   PMID:26633812   PMID:30550785   PMID:30628891   PMID:32325033   PMID:35857828   PMID:36531136   PMID:37121509   PMID:38781210  


Genomics

Comparative Map Data
Sema4b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39779,836,618 - 79,876,394 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl779,836,589 - 79,876,275 (+)EnsemblGRCm39 Ensembl
GRCm38780,186,870 - 80,226,646 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl780,186,841 - 80,226,527 (+)EnsemblGRCm38mm10GRCm38
MGSCv37787,331,727 - 87,371,410 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36780,072,038 - 80,099,907 (+)NCBIMGSCv36mm8
Celera777,588,064 - 77,627,863 (+)NCBICelera
Cytogenetic Map7D2NCBI
cM Map745.51NCBI
SEMA4B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381590,184,920 - 90,229,661 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1590,160,604 - 90,229,679 (+)EnsemblGRCh38hg38GRCh38
GRCh371590,728,152 - 90,772,893 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361588,529,156 - 88,573,896 (+)NCBINCBI36Build 36hg18NCBI36
Build 341588,545,565 - 88,573,894NCBI
Celera1567,132,562 - 67,177,271 (+)NCBICelera
Cytogenetic Map15q26.1NCBI
HuRef1566,840,233 - 66,884,886 (+)NCBIHuRef
CHM1_11590,570,020 - 90,614,740 (+)NCBICHM1_1
T2T-CHM13v2.01587,940,946 - 87,985,668 (+)NCBIT2T-CHM13v2.0
Sema4b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81143,545,727 - 143,587,037 (+)NCBIGRCr8
mRatBN7.21134,136,646 - 134,177,777 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1134,149,536 - 134,177,775 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1142,058,363 - 142,086,508 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01149,227,763 - 149,255,908 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01142,145,557 - 142,173,801 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01141,986,145 - 142,014,400 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1141,986,145 - 142,014,398 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01142,941,088 - 142,968,795 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41136,001,219 - 136,031,302 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11136,079,624 - 136,109,702 (+)NCBI
Celera1126,209,674 - 126,237,909 (+)NCBICelera
Cytogenetic Map1q31NCBI
Sema4b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541615,108,175 - 15,130,746 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541615,107,258 - 15,143,338 (-)NCBIChiLan1.0ChiLan1.0
SEMA4B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21679,733,117 - 79,777,995 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11583,432,586 - 83,477,430 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01568,873,927 - 68,918,792 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11588,076,399 - 88,120,729 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1588,076,399 - 88,120,729 (+)Ensemblpanpan1.1panPan2
SEMA4B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1353,159,233 - 53,184,102 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl353,121,775 - 53,184,118 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha355,751,921 - 55,822,246 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0353,575,541 - 53,600,478 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl353,575,536 - 53,600,127 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1353,050,291 - 53,120,581 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0353,306,792 - 53,331,717 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0353,647,261 - 53,672,192 (+)NCBIUU_Cfam_GSD_1.0
Sema4b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640130,371,613 - 130,410,098 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648315,937,398 - 15,961,911 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648315,937,132 - 15,963,170 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SEMA4B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl755,753,097 - 55,793,980 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1755,752,854 - 55,793,982 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
SEMA4B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1298,733,647 - 8,776,618 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl298,749,015 - 8,775,621 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605937,953,982 - 37,981,988 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Sema4b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476817,185,161 - 17,207,666 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476817,170,732 - 17,208,601 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:824
Count of miRNA genes:529
Interacting mature miRNAs:607
Transcripts:ENSMUST00000032754, ENSMUST00000107383, ENSMUST00000123023
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
25314307Mlh1fc2_mMLH1 foci count 2 (mouse)76502999133501729Mouse
27226781Tibl3_mtibia length 3, 5 week (mouse)774849748122199223Mouse
25314305Vmm6_mvariable multisystem mineralization 6, eye (mouse)761849748102749207Mouse
27226778Femd11_mfemur midshaft diameter 11, 16 week (mouse)756949748134001729Mouse
26884381Bzwq2_mbi-zygomatic width QTL 2, 5 week (mouse)76524974896949207Mouse
1301784Ses2_msalmonella enteritidis susceptibility 2 (mouse)Not determined767290094101290240Mouse
1301663Skull9_mskull morphology 9 (mouse)Not determined75732612191326352Mouse
14746989Manh62_mmandible shape 62 (mouse)775742528109742528Mouse
10043926Bw1n_mbody weight 1 in NSY (mouse)Not determined745161966118693530Mouse
1301383Aem2_manti-erythrocyte autoantibody modifier 2 (mouse)Not determined76413542498135653Mouse
1301514Rigs1_mradiation induced gastroschisis 1 (mouse)Not determined73628001592394346Mouse
27095937Ulnl7_mulna length 7, 10 week (mouse)76644974898349207Mouse
11565101Tsve1_mvariable short tail (Tsv) enhancer 1 (mouse)75588950887142720Mouse
1300620Pgia21_mproteoglycan induced arthritis 21 (mouse)Not determined767290094101290240Mouse
13208555Lgth10_mbody length 10 (mouse)751649748125599172Mouse
26884408Bzwq13_mbi-zygomatic width QTL 13, 16 week (mouse)761749748121399223Mouse
1300791Abbp3_mA/J and C57BL/6 blood pressure 3 (mouse)Not determined739673887103510010Mouse
10054064Bwq11_mbody weight QTL 11 (mouse)Not determined75112495485125093Mouse
1357752Tabw_mtally ho asscoiated body weight (mouse)Not determined74919327883193390Mouse
10053685Eae43_mexperimental allergic encephalomyelitis susceptibility 43 (mouse)Not determined75112495485125093Mouse
1301566Adip3_madiposity 3 (mouse)Not determined775394215109394346Mouse
26884404Huml1_mhumerus length 1, 5 week (mouse)730199425108999207Mouse
1301155Bpq7_mblood pressure QTL 7 (mouse)Not determined770143137104143379Mouse
26884398Humsd6_mhumerus midshaft diameter 6, 16 week (mouse)778649748136901729Mouse
1301158Eae4_msusceptibility to experimental allergic encephalomyelitis 4 (mouse)Not determined719147398141919804Mouse
10412199Sst2_msusceptibility to tuberculosis 2 (mouse)Not determined718728794119485380Mouse
4142212Png1_mPostnatal growth 1 (mouse)Not determined7432612192394346Mouse
1300654Bomd1_mbone mineral density 1 (mouse)Not determined768365595102365702Mouse
26884440Sklq4_mskull length QTL 4, 5 week (mouse)765249748126499172Mouse
27226715Metcl3_mmetatarsal-calcaneal length 3, 5 week (mouse)767849748119499223Mouse
26884444Sklq8_mskull length QTL 8, 10 week (mouse)767849748124199223Mouse
25823170Hrsq7_mhost response to SARS QTL 7, log titer (mouse)754819589116822815Mouse
1301082Bbaa16_mB.burgdorferi-associated arthritis 16 (mouse)Not determined736280015116416877Mouse
1301465Egrm3_mearly growth rate (mouse)Not determined75732612191326352Mouse
1300952Hcs1_mhepatocarcinogenesis susceptibility 1 (mouse)Not determined75732612191326352Mouse
4142319Powg_mpost-ovarectomy weight gain (mouse)Not determined7285710592582163Mouse
12792978Fbmd3_mfemoral bone mineral density 3, females only (mouse)77050288142367832Mouse
1301826Pgia3_mproteoglycan induced arthritis 3 (mouse)Not determined767290094101290240Mouse
4141805Sle19_msystematic lupus erythematosus susceptibility 19 (mouse)Not determined3003248581135653Mouse
26884418Bzwq7_mbi-zygomatic width QTL 7, 10 week (mouse)767849748105449207Mouse
10043973Obq29_mobesity QTL 29 (mouse)Not determined772263372106263372Mouse
27226751Femd5_mfemur midshaft diameter 5, 10 week (mouse)753249748143153737Mouse
27095933Ulnl3_mulna length 3, 5 week (mouse)773149748143153737Mouse
1300722Sle3_msystemic lupus erythmatosus susceptibility 3 (mouse)Not determined7351172887142720Mouse
12880418V125Dq6_mvitamin D active form serum level QTL 6 (mouse)75214974886149748Mouse
27226745Metcl9_mmetatarsal-calcaneal length 9, 10 week (mouse)774849748122199223Mouse
11532741Tbrs5_mtuberculosis resistance 5 (mouse)74915922783235415Mouse
1302141Fcsa6_mfemoral cross-sectional area 6 (mouse)Not determined74838446182384607Mouse
27095916Scvln15_msacral vertebrae length 2, 16 week (mouse)761749748123699223Mouse
13513916Heal53_mwound healing/ regeneration 53 (mouse)77945491380630796Mouse
12801463Rta1_mretinal aging 1 (mouse)76716802789089989Mouse
11553865Stmm1c_mskin tumor modifier of MSM 1c (mouse)76578898699788986Mouse
26884451Sklq14_mskull length QTL 14, 16 week (mouse)767849748124999172Mouse
11553866Stmm1d_mskin tumor modifier of MSM 1d (mouse)76578898699788986Mouse
27095910Pglq13_mpelvic girdle length QTL 13, 16 week (mouse)773049748125699172Mouse
25314303Vmm4_mvariable multisystem mineralization 4, kidney (mouse)73729942587049208Mouse
11553869Stmm2b_mskin tumor modifier of MSM 2a (mouse)773725965107725965Mouse
27095907Scvln4_msacral vertebrae length 2, 5 week (mouse)769949748120499223Mouse

Markers in Region
D10Mit157.2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map6D1UniSTS
Cytogenetic Map16B4UniSTS
Cytogenetic Map18E2UniSTS
Cytogenetic Map4C3UniSTS
Cytogenetic Map7B2UniSTS
Cytogenetic Map4D2.3UniSTS
Cytogenetic Map11E1UniSTS
Cytogenetic Map14E2.2UniSTS
Cytogenetic Map4C7UniSTS
Cytogenetic Map2H4UniSTS
Cytogenetic Map1FUniSTS
Cytogenetic Map6C3UniSTS
Cytogenetic Map11DUniSTS
Cytogenetic Map3G2UniSTS
Cytogenetic Map17A1UniSTS
Cytogenetic Map9F2UniSTS
Cytogenetic Map12F1UniSTS
Cytogenetic Map19C2UniSTS
Cytogenetic Map3BUniSTS
Cytogenetic Map8C1UniSTS
Cytogenetic Map18A2UniSTS
Cytogenetic Map3F2UniSTS
Cytogenetic Map14C3UniSTS
Cytogenetic Map8E1UniSTS
Cytogenetic Map8E2UniSTS
Cytogenetic Map5B1UniSTS
Cytogenetic Map18B1UniSTS
Cytogenetic Map9CUniSTS
Cytogenetic Map14C2UniSTS
Cytogenetic Map6A1UniSTS
Cytogenetic Map10B4UniSTS
Cytogenetic Map13D2.1UniSTS
Cytogenetic Map5E5UniSTS
Cytogenetic Map11B1.3UniSTS
Cytogenetic Map4D1UniSTS
Cytogenetic Map9A5.2UniSTS
Cytogenetic Map3F1UniSTS
Cytogenetic Map17E3UniSTS
Cytogenetic Map11B3UniSTS
Cytogenetic Map1H4UniSTS
Cytogenetic Map6A3UniSTS
Cytogenetic Map5E4-E5UniSTS
Cytogenetic Map15E1UniSTS
Cytogenetic Map13DUniSTS
Cytogenetic Map14BUniSTS
Cytogenetic Map14D1UniSTS
Cytogenetic Map7B4UniSTS
Cytogenetic Map8D3UniSTS
Cytogenetic MapXDUniSTS
Cytogenetic Map17A3.3UniSTS
Cytogenetic Map7E2UniSTS
Cytogenetic Map1H2.3UniSTS
Cytogenetic Map7A2UniSTS
Cytogenetic Map7F3UniSTS
Cytogenetic Map9F1UniSTS
Cytogenetic Map10C1UniSTS
Cytogenetic Map4E2UniSTS
Cytogenetic Map16A1UniSTS
Cytogenetic Map8B3.3UniSTS
Cytogenetic Map8D2UniSTS
Cytogenetic Map3DUniSTS
Cytogenetic Map15D2UniSTS
Cytogenetic Map17B1UniSTS
Cytogenetic Map7A3UniSTS
Cytogenetic Map15F1UniSTS
Cytogenetic Map16B2UniSTS
Cytogenetic Map7CUniSTS
Cytogenetic Map3F2.1UniSTS
Cytogenetic Map6F3UniSTS
Cytogenetic Map1C4UniSTS
Cytogenetic Map11E2UniSTS
Cytogenetic Map11B5UniSTS
Cytogenetic Map9F3UniSTS
Cytogenetic Map2BUniSTS
Cytogenetic Map13B3UniSTS
Cytogenetic Map9A4UniSTS
Cytogenetic Map5A3UniSTS
Cytogenetic Map2H1UniSTS
Cytogenetic Map16B1UniSTS
Cytogenetic Map1A5UniSTS
Cytogenetic Map11CUniSTS
Cytogenetic Map9E1UniSTS
Cytogenetic Map6G1UniSTS
Cytogenetic MapXA2UniSTS
Cytogenetic Map13B1UniSTS
Cytogenetic Map5E2UniSTS
Cytogenetic Map12C1UniSTS
Cytogenetic Map5FUniSTS
Cytogenetic Map4D3UniSTS
Cytogenetic Map10C2UniSTS
Cytogenetic Map9BUniSTS
Cytogenetic Map5G2UniSTS
Cytogenetic Map7F1UniSTS
Cytogenetic Map12C3UniSTS
Cytogenetic Map10A4UniSTS
Cytogenetic Map8A2UniSTS
Cytogenetic Map18A1UniSTS
Cytogenetic Map12A1.1UniSTS
Cytogenetic Map1C2UniSTS
Cytogenetic Map11B2UniSTS
Cytogenetic Map6E3UniSTS
Cytogenetic Map5C3.3UniSTS
Cytogenetic Map1BUniSTS
Cytogenetic Map17A3.1UniSTS
Cytogenetic Map7A1UniSTS
Cytogenetic Map2E5UniSTS
Cytogenetic Map11A1UniSTS
Cytogenetic Map4B1UniSTS
Cytogenetic Map15A2UniSTS
Cytogenetic Map8C3UniSTS
Cytogenetic Map2A3UniSTS
Cytogenetic Map5G3UniSTS
Cytogenetic Map4A3UniSTS
Cytogenetic Map2H3UniSTS
Cytogenetic Map8A1UniSTS
Cytogenetic Map8A1.1UniSTS
Cytogenetic Map16A3UniSTS
Cytogenetic Map10B1UniSTS
Cytogenetic Map19AUniSTS
Cytogenetic Map10A1UniSTS
Cytogenetic Map13D1UniSTS
Cytogenetic Map4A1UniSTS
Cytogenetic Map9A3UniSTS
Cytogenetic Map17CUniSTS
Cytogenetic Map1DUniSTS
Cytogenetic Map5E3UniSTS
Cytogenetic Map15D3UniSTS
Cytogenetic Map2H2UniSTS
Cytogenetic Map7D3UniSTS
Cytogenetic Map2A1UniSTS
Cytogenetic Map14C1UniSTS
Cytogenetic Map14E5UniSTS
Cytogenetic Map10CUniSTS
Cytogenetic Map18B2UniSTS
Cytogenetic Map2F1UniSTS
Cytogenetic Map10D3UniSTS
Cytogenetic Map17A2UniSTS
Cytogenetic Map2C3UniSTS
Cytogenetic Map1C3UniSTS
Cytogenetic Map17B2UniSTS
Cytogenetic Map5B2UniSTS
Cytogenetic Map5G1UniSTS
Cytogenetic Map4C6UniSTS
Cytogenetic Map13C3UniSTS
Cytogenetic Map2E1UniSTS
Cytogenetic Map17A3.2-A3.3UniSTS
Cytogenetic Map19C3UniSTS
Cytogenetic Map7E3UniSTS
Cytogenetic Map13C1UniSTS
Cytogenetic Map9E3.1UniSTS
Cytogenetic Map15E3UniSTS
Cytogenetic Map6B1UniSTS
Cytogenetic MapXE3UniSTS
Cytogenetic Map4C4UniSTS
Cytogenetic Map3E3UniSTS
Cytogenetic Map11A4UniSTS
Cytogenetic Map4C5UniSTS
Cytogenetic Map18B3UniSTS
Cytogenetic Map9A2UniSTS
Cytogenetic Map7E1UniSTS
Cytogenetic Map5D-E1UniSTS
Cytogenetic Map5B3UniSTS
Cytogenetic Map13A2-A3UniSTS
Cytogenetic Map5A2UniSTS
Cytogenetic Map4B3UniSTS
Cytogenetic Map1E4UniSTS
Cytogenetic Map17E4UniSTS
Cytogenetic Map1G2UniSTS
Cytogenetic Map15B3.1UniSTS
Cytogenetic Map12EUniSTS
Cytogenetic MapXA5UniSTS
Cytogenetic Map6A3.3UniSTS
Cytogenetic Map6G3UniSTS
Cytogenetic Map6F2UniSTS
Cytogenetic Map5C1UniSTS
Cytogenetic Map4D2.1UniSTS
Cytogenetic Map4A5UniSTS
Cytogenetic Map3F2.2UniSTS
Cytogenetic Map1E3-E4UniSTS
Cytogenetic Map9F1-F3UniSTS
Cytogenetic Map1C1.1UniSTS
Cytogenetic Map14D2UniSTS
Cytogenetic Map12A2UniSTS
Cytogenetic Map17A3-BUniSTS
Cytogenetic Map7F5UniSTS
Cytogenetic Map14A3UniSTS
Cytogenetic Map5G1.1UniSTS
Cytogenetic MapXF2-F4UniSTS
Cytogenetic Map7D2UniSTS
Cytogenetic Map2F3UniSTS
Cytogenetic Map10A3UniSTS
Cytogenetic MapXA7.3UniSTS
Cytogenetic Map9F1-F2UniSTS
Cytogenetic Map13A3.2UniSTS
Cytogenetic Map10A2UniSTS
Cytogenetic Map1C1UniSTS
Cytogenetic Map1A1UniSTS
Cytogenetic Map12D3UniSTS
Cytogenetic Map1A3-A5UniSTS
Cytogenetic Map2A2UniSTS
Cytogenetic Map3A1UniSTS
Cytogenetic MapXA3.3UniSTS
Cytogenetic Map16A-B1UniSTS
Cytogenetic Map1D2.3UniSTS
Cytogenetic Map6B2.3UniSTS
Cytogenetic Map2G3UniSTS
Cytogenetic MapXA2-A3.1UniSTS
Cytogenetic Map9A5.3UniSTS
Cytogenetic Map14A2-BUniSTS
Cytogenetic Map8E1-E2UniSTS
Cytogenetic Map8A3UniSTS
Cytogenetic Map1G3-H1UniSTS
Cytogenetic Map8B3-C1UniSTS
Cytogenetic Map19C1UniSTS
Cytogenetic Map8C5UniSTS
Cytogenetic Map8A4UniSTS
Cytogenetic Map15F3UniSTS
Cytogenetic Map14E4UniSTS
Cytogenetic Map4D2.2UniSTS
Cytogenetic MapXF5UniSTS
cM Map1040.0UniSTS
Whitehead Genetic1033.9UniSTS


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSMUST00000032754   ⟹   ENSMUSP00000032754
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl779,836,589 - 79,876,275 (+)Ensembl
GRCm38.p6 Ensembl780,186,841 - 80,226,527 (+)Ensembl
Ensembl Acc Id: ENSMUST00000107383
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl779,836,626 - 79,871,580 (+)Ensembl
GRCm38.p6 Ensembl780,186,878 - 80,221,832 (+)Ensembl
Ensembl Acc Id: ENSMUST00000123023
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl779,848,284 - 79,863,813 (+)Ensembl
GRCm38.p6 Ensembl780,198,536 - 80,214,065 (+)Ensembl
Ensembl Acc Id: ENSMUST00000205822   ⟹   ENSMUSP00000145622
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl779,848,189 - 79,876,159 (+)Ensembl
GRCm38.p6 Ensembl780,198,441 - 80,226,411 (+)Ensembl
RefSeq Acc Id: NM_001360135   ⟹   NP_001347064
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39779,848,336 - 79,876,149 (+)NCBI
GRCm38780,198,588 - 80,226,401 (+)NCBI
Sequence:
RefSeq Acc Id: NM_013659   ⟹   NP_038687
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39779,836,618 - 79,876,149 (+)NCBI
GRCm38780,186,870 - 80,226,401 (+)NCBI
MGSCv37787,331,727 - 87,371,410 (+)RGD
Celera777,588,064 - 77,627,863 (+)RGD
cM Map7 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_030242259   ⟹   XP_030098119
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39779,847,830 - 79,876,394 (+)NCBI
GRCm38780,198,045 - 80,226,646 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036152820   ⟹   XP_036008713
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39779,844,295 - 79,876,394 (+)NCBI
Sequence:
RefSeq Acc Id: NP_038687   ⟸   NM_013659
- Peptide Label: precursor
- UniProtKB: Q4PKI6 (UniProtKB/Swiss-Prot),   Q69ZB7 (UniProtKB/Swiss-Prot),   Q62179 (UniProtKB/Swiss-Prot),   Q8BIR6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_030098119   ⟸   XM_030242259
- Peptide Label: isoform X1
- UniProtKB: Q62179 (UniProtKB/Swiss-Prot),   Q4PKI6 (UniProtKB/Swiss-Prot),   Q69ZB7 (UniProtKB/Swiss-Prot),   Q8BIR6 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001347064   ⟸   NM_001360135
- Peptide Label: precursor
- UniProtKB: Q62179 (UniProtKB/Swiss-Prot),   Q4PKI6 (UniProtKB/Swiss-Prot),   Q69ZB7 (UniProtKB/Swiss-Prot),   Q8BIR6 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSMUSP00000032754   ⟸   ENSMUST00000032754
Ensembl Acc Id: ENSMUSP00000145622   ⟸   ENSMUST00000205822
RefSeq Acc Id: XP_036008713   ⟸   XM_036152820
- Peptide Label: isoform X1
- UniProtKB: Q62179 (UniProtKB/Swiss-Prot),   Q4PKI6 (UniProtKB/Swiss-Prot),   Q69ZB7 (UniProtKB/Swiss-Prot),   Q8BIR6 (UniProtKB/TrEMBL)
Protein Domains
Ig-like C2-type   PSI   Sema

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q62179-F1-model_v2 AlphaFold Q62179 1-823 view protein structure

Promoters
RGD ID:8664543
Promoter ID:EPDNEW_M10303
Type:initiation region
Name:Sema4b_2
Description:Mus musculus sema domain, immunoglobulin domain , transmembranedomain and short cytoplasmic domain, 4B , transcript variant2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M10304  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38780,186,874 - 80,186,934EPDNEW
RGD ID:8664545
Promoter ID:EPDNEW_M10304
Type:initiation region
Name:Sema4b_1
Description:Mus musculus sema domain, immunoglobulin domain , transmembranedomain and short cytoplasmic domain, 4B , transcript variant2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M10303  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38780,198,588 - 80,198,648EPDNEW
RGD ID:6841992
Promoter ID:MM_KWN:51271
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   Spleen
Transcripts:ENSMUST00000107383,   NM_013659
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36787,331,299 - 87,331,799 (+)MPROMDB
RGD ID:6842018
Promoter ID:MM_KWN:51272
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:UC009HZQ.1,   UC009HZR.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36787,342,486 - 87,343,567 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:107559 AgrOrtholog
Ensembl Genes ENSMUSG00000030539 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000032754 ENTREZGENE
  ENSMUST00000032754.9 UniProtKB/Swiss-Prot
  ENSMUST00000205822 ENTREZGENE
  ENSMUST00000205822.2 UniProtKB/Swiss-Prot
Gene3D-CATH 2.130.10.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ligand-binding face of the semaphorins, domain 2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Plexin_repeat UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PSI UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Semap_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Semap_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Semaphorin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WD40/YVTN_repeat-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:20352 UniProtKB/Swiss-Prot
MGD MGI:107559 ENTREZGENE
NCBI Gene 20352 ENTREZGENE
PANTHER PTHR11036 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SEMAPHORIN-4B UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam PSI UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Sema UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Sema4b PhenoGen
PROSITE SEMA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART PSI UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Sema UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP Plexin repeat UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF101912 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt Q4PKI6 ENTREZGENE
  Q62179 ENTREZGENE
  Q69ZB7 ENTREZGENE
  Q8BIR6 ENTREZGENE, UniProtKB/TrEMBL
  SEM4B_MOUSE UniProtKB/Swiss-Prot
UniProt Secondary Q4PKI6 UniProtKB/Swiss-Prot
  Q69ZB7 UniProtKB/Swiss-Prot