Gatb (glutamyl-tRNA amidotransferase subunit B) - Rat Genome Database

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Gene: Gatb (glutamyl-tRNA amidotransferase subunit B) Mus musculus
Analyze
Symbol: Gatb
Name: glutamyl-tRNA amidotransferase subunit B (Ensembl:glutamyl-tRNA(Gln) amidotransferase, subunit B)
RGD ID: 1317306
MGI Page MGI
Description: Predicted to enable glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity. Predicted to be involved in glutaminyl-tRNAGln biosynthesis via transamidation and mitochondrial translation. Predicted to act upstream of or within translation. Located in mitochondrion. Human ortholog(s) of this gene implicated in combined oxidative phosphorylation deficiency 41. Orthologous to human GATB (glutamyl-tRNA amidotransferase subunit B).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 9430026F02Rik; cytochrome c oxidase assembly factor PET112 homolog; cytochrome oxidase assembly factor PET112 homolog; glu-ADT subunit B; glutamyl-tRNA(Gln) amidotransferase subunit B, mitochondrial; glutamyl-tRNA(Gln) amidotransferase, subunit B; MGC11629; Pet11; Pet112; PET112 homolog; PET112-like; Pet112l; probable glutamyl-tRNA(Gln) amidotransferase subunit B, mitochondrial
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39385,481,409 - 85,562,945 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl385,481,426 - 85,562,929 (+)EnsemblGRCm39 Ensembl
GRCm38385,574,102 - 85,655,624 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl385,574,119 - 85,655,622 (+)EnsemblGRCm38mm10GRCm38
MGSCv37385,378,051 - 85,458,392 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36385,660,056 - 85,740,397 (+)NCBIMGSCv36mm8
Celera385,599,682 - 85,675,540 (+)NCBICelera
Cytogenetic Map3F1NCBI
cM Map337.83NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. MGDs mouse GO annotations MGD data from the GO Consortium
2. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12477932   PMID:14651853   PMID:14681479   PMID:15489334   PMID:15782199   PMID:16141072  
PMID:16141073   PMID:18614015   PMID:21677750   PMID:21873635   PMID:24579914   PMID:32325033   PMID:32968282  


Genomics

Comparative Map Data
Gatb
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39385,481,409 - 85,562,945 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl385,481,426 - 85,562,929 (+)EnsemblGRCm39 Ensembl
GRCm38385,574,102 - 85,655,624 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl385,574,119 - 85,655,622 (+)EnsemblGRCm38mm10GRCm38
MGSCv37385,378,051 - 85,458,392 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36385,660,056 - 85,740,397 (+)NCBIMGSCv36mm8
Celera385,599,682 - 85,675,540 (+)NCBICelera
Cytogenetic Map3F1NCBI
cM Map337.83NCBI
GATB
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh384151,670,504 - 151,761,007 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl4151,670,504 - 151,761,007 (-)EnsemblGRCh38hg38GRCh38
GRCh374152,591,656 - 152,682,159 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 364152,811,451 - 152,901,596 (-)NCBINCBI36Build 36hg18NCBI36
Build 344152,949,605 - 153,039,751NCBI
Celera4149,915,711 - 150,006,079 (-)NCBICelera
Cytogenetic Map4q31.3NCBI
HuRef4148,317,316 - 148,407,773 (-)NCBIHuRef
CHM1_14152,569,828 - 152,660,194 (-)NCBICHM1_1
T2T-CHM13v2.04154,993,606 - 155,084,109 (-)NCBIT2T-CHM13v2.0
Gatb
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82173,228,562 - 173,315,144 (+)NCBIGRCr8
mRatBN7.22170,930,547 - 171,017,133 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2170,930,542 - 171,016,695 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2178,096,871 - 178,167,886 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02176,116,813 - 176,187,822 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02170,718,343 - 170,789,356 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02184,600,695 - 184,679,980 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2184,600,721 - 184,679,683 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02203,993,388 - 204,077,577 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.12177,358,205 - 177,383,899 (+)NCBI
Celera2164,917,651 - 164,995,438 (+)NCBICelera
Cytogenetic Map2q34NCBI
Gatb
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554716,230,027 - 6,313,706 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554716,230,027 - 6,313,655 (-)NCBIChiLan1.0ChiLan1.0
GATB
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v23149,550,825 - 149,641,078 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan14149,907,909 - 149,998,204 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v04144,005,127 - 144,095,552 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.14155,657,600 - 155,747,679 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl4155,657,600 - 155,747,679 (-)Ensemblpanpan1.1panPan2
GATB
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11549,602,453 - 49,698,593 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1549,603,559 - 49,698,535 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1549,950,070 - 50,039,302 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01550,282,357 - 50,378,743 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1550,257,912 - 50,378,715 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11549,550,200 - 49,640,242 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01549,651,594 - 49,741,574 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01549,962,228 - 50,052,683 (-)NCBIUU_Cfam_GSD_1.0
Gatb
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530140,805,422 - 40,884,572 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366891,646,839 - 1,725,853 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366891,646,839 - 1,725,799 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GATB
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl877,169,566 - 77,323,859 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1877,222,457 - 77,323,720 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2881,844,227 - 81,898,796 (+)NCBISscrofa10.2Sscrofa10.2susScr3
GATB
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1798,245,646 - 98,331,083 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl798,245,968 - 98,331,082 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603777,856,942 - 77,943,680 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Gatb
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248583,121,443 - 3,208,904 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248583,121,443 - 3,208,853 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Gatb
2466 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1632
Count of miRNA genes:706
Interacting mature miRNAs:892
Transcripts:ENSMUST00000029726, ENSMUST00000107672, ENSMUST00000107674, ENSMUST00000127348, ENSMUST00000134273
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
26884436Zlq3_mzygomatic length QTL 3, 10 week (mouse)33265060142405761Mouse
4142399Aec1_mautoimmune exocrinopathy 1 (mouse)Not determined7586174102690034Mouse
26884427Cvht4_mcranial vault height 4, 10 week (mouse)316054164109707316Mouse
13207570Tcq12_mtotal cholesterol QTL 12 (mouse)316504164130163649Mouse
26884422Cvht7_mcranial vault height 7, 16 week (mouse)328954149118893649Mouse
1302056Orgwq4_morgan weight QTL 4 (mouse)Not determined330067588147304689Mouse
1301705Sles3_msystemic lupus erythmatosus suppressor 3 (mouse)Not determined337174862143353183Mouse
13208566Bmiq5_mbody mass index QTL 5 (mouse)340954435115793649Mouse
26884380Skwq1_mskull length QTL 1, 5 week (mouse)343954435101607316Mouse
26884378Skwq6_mskull length QTL 6, 10 week (mouse)351907421102307316Mouse
26884382Bzwq1_mbi-zygomatic width QTL 1, 5 week (mouse)352207421137205761Mouse
1357585Manln3_mmandible length 3 (mouse)Not determined35262550986625745Mouse
1301917Tshp4_mtooth shape 4 (mouse)Not determined35262550986625745Mouse
1300593Skull4_mskull morphology 4 (mouse)Not determined35262550986625745Mouse
13464139Nhdlq17_mnon-HDL QTL 17 (mouse)35292318386923183Mouse
11039519Ltpr3_mLeishmania tropica response 3 (mouse)356704102100464137Mouse
12880419V125Dq4_mvitamin D active form serum level QTL 4 (mouse)35890730792907307Mouse
4141294Bmd24_mbone mineral density 24 (mouse)Not determined36174006195740241Mouse
1301971Cia5_mcollagen induced arthritis QTL 5 (mouse)Not determined366046658100046795Mouse
25314313Syncl1_msynaptonemal complex length 1 (mouse)367907333128393649Mouse
11251721Ewc3_methanol withdrawal and consumption 3 (mouse)369568554103568554Mouse
1301791Char4_mP. chabaudi malaria resistance QTL 4 (mouse)Not determined369625509100655290Mouse
1301422Sle11_msystematic lupus erythematosus susceptibility 11 (mouse)Not determined370208904104209042Mouse
11049572Lmr11c_mleishmaniasis resistance 11c (mouse)372139967106140094Mouse
1300982Lmr11_mleishmaniasis resistance 11 (mouse)Not determined372139967106140094Mouse
1300595Tmevd2_mTheiler's murine encephalomyelitis virus induced demyelinating disease susceptibility 2 (mouse)Not determined375463302109463549Mouse
1301392Eae3_msusceptibility to experimental allergic encephalomyelitis 3 (mouse)Not determined379548730113548837Mouse
1301947Pcfm3_mperiosteal circumference and femur length 3 (mouse)Not determined381084652115084797Mouse
1301904Iba2_minduction of brown adipocytes 2 (mouse)Not determined382147043116147184Mouse
11041900Lmr11a_mleishmaniasis resistance 11a (mouse)383463991117464137Mouse
11039510Ltpr3d_mLeishmania tropica response 3d (mouse)383463991117464137Mouse
11039511Ltpr3c_mLeishmania tropica response 3c (mouse)383463991117464137Mouse
11039507Ltpr3g_mLeishmania tropica response 3g (mouse)383463991117464137Mouse
11039508Ltpr3f_mLeishmania tropica response 3f (mouse)383463991117464137Mouse
11039509Ltpr3e_mLeishmania tropica response 3e (mouse)383463991117464137Mouse
11039512Ltpr3b_mLeishmania tropica response 3b (mouse)383463991117464137Mouse
1301272Cfsw1_mcystic fibrosis survival to weaning 1 (mouse)Not determined383882912117883044Mouse
4142099Cq3_mcholesterol QTL 3 (mouse)Not determined384888918118889067Mouse
14746984Manh54_mmandible shape 54 (mouse)385289152119289152Mouse

Markers in Region
AI851520  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38385,654,142 - 85,654,262UniSTSGRCm38
MGSCv37385,458,064 - 85,458,184UniSTSGRCm37
Celera385,675,212 - 85,675,332UniSTS
Cytogenetic Map3F1UniSTS
Whitehead/MRC_RH3874.26UniSTS
MARC_8163-8164:996688339:1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38385,604,510 - 85,605,070UniSTSGRCm38
MGSCv37385,408,432 - 85,408,992UniSTSGRCm37
Celera385,630,099 - 85,630,659UniSTS
Cytogenetic Map3F1UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001399230 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_144896 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006501329 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006501330 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006501331 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011240080 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036163041 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036163042 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036163043 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036163044 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_003954307 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004941305 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_375512 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC102296 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC102338 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK028193 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK034702 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK053978 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK081800 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK134831 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK166231 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK182374 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK192956 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK197571 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK216487 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC005709 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466547 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000029726
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl385,481,502 - 85,561,465 (+)Ensembl
GRCm38.p6 Ensembl385,574,195 - 85,654,158 (+)Ensembl
RefSeq Acc Id: ENSMUST00000107672   ⟹   ENSMUSP00000103299
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl385,481,426 - 85,553,886 (+)Ensembl
GRCm38.p6 Ensembl385,574,119 - 85,646,579 (+)Ensembl
RefSeq Acc Id: ENSMUST00000107674   ⟹   ENSMUSP00000103301
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl385,481,434 - 85,560,140 (+)Ensembl
GRCm38.p6 Ensembl385,574,127 - 85,652,833 (+)Ensembl
RefSeq Acc Id: ENSMUST00000127348   ⟹   ENSMUSP00000119949
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl385,481,426 - 85,562,929 (+)Ensembl
GRCm38.p6 Ensembl385,574,119 - 85,655,622 (+)Ensembl
RefSeq Acc Id: ENSMUST00000134273
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl385,481,439 - 85,483,348 (+)Ensembl
GRCm38.p6 Ensembl385,574,132 - 85,576,041 (+)Ensembl
RefSeq Acc Id: NM_001399230   ⟹   NP_001386159
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39385,481,426 - 85,560,147 (+)NCBI
RefSeq Acc Id: NM_144896   ⟹   NP_659145
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39385,481,426 - 85,562,945 (+)NCBI
GRCm38385,574,129 - 85,654,470 (+)NCBI
MGSCv37385,378,051 - 85,458,392 (+)RGD
Celera385,599,682 - 85,675,540 (+)RGD
cM Map3 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006501329   ⟹   XP_006501392
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39385,481,409 - 85,562,931 (+)NCBI
GRCm38385,574,102 - 85,653,812 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006501330   ⟹   XP_006501393
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39385,481,409 - 85,562,931 (+)NCBI
GRCm38385,574,102 - 85,655,624 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006501331   ⟹   XP_006501394
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39385,481,409 - 85,562,931 (+)NCBI
GRCm38385,574,102 - 85,653,812 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011240080   ⟹   XP_011238382
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39385,483,232 - 85,562,931 (+)NCBI
GRCm38385,575,925 - 85,653,812 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036163041   ⟹   XP_036018934
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39385,481,409 - 85,562,931 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036163042   ⟹   XP_036018935
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39385,481,409 - 85,562,931 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036163043   ⟹   XP_036018936
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39385,481,445 - 85,562,931 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036163044   ⟹   XP_036018937
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39385,481,434 - 85,562,931 (+)NCBI
Sequence:
RefSeq Acc Id: XR_003954307
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39385,481,409 - 85,562,931 (+)NCBI
GRCm38385,574,102 - 85,655,624 (+)NCBI
Sequence:
RefSeq Acc Id: XR_004941305
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39385,481,409 - 85,562,931 (+)NCBI
Sequence:
RefSeq Acc Id: XR_375512
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39385,481,409 - 85,562,931 (+)NCBI
GRCm38385,574,102 - 85,655,624 (+)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_659145   ⟸   NM_144896
- Peptide Label: isoform 1 precursor
- UniProtKB: Q8BMU3 (UniProtKB/Swiss-Prot),   Q8BUY3 (UniProtKB/Swiss-Prot),   Q99JT1 (UniProtKB/Swiss-Prot),   Q3TLZ6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006501393   ⟸   XM_006501330
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_006501392   ⟸   XM_006501329
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006501394   ⟸   XM_006501331
- Peptide Label: isoform X4
- UniProtKB: Q3TLZ6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011238382   ⟸   XM_011240080
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: ENSMUSP00000103299   ⟸   ENSMUST00000107672
RefSeq Acc Id: ENSMUSP00000103301   ⟸   ENSMUST00000107674
RefSeq Acc Id: ENSMUSP00000119949   ⟸   ENSMUST00000127348
RefSeq Acc Id: XP_036018934   ⟸   XM_036163041
- Peptide Label: isoform X3
- UniProtKB: Q3TLZ6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_036018935   ⟸   XM_036163042
- Peptide Label: isoform X5
- UniProtKB: Q3TLZ6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_036018937   ⟸   XM_036163044
- Peptide Label: isoform X8
RefSeq Acc Id: XP_036018936   ⟸   XM_036163043
- Peptide Label: isoform X7
RefSeq Acc Id: NP_001386159   ⟸   NM_001399230
- Peptide Label: isoform 2 precursor
- UniProtKB: Q8BW84 (UniProtKB/TrEMBL)
Protein Domains
Asn/Gln amidotransferase   Aspartyl/Glutamyl-tRNA(Gln) amidotransferase subunit

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q99JT1-F1-model_v2 AlphaFold Q99JT1 1-557 view protein structure

Promoters
RGD ID:6834227
Promoter ID:MM_KWN:34740
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000107672,   ENSMUST00000107674,   OTTMUST00000056665,   OTTMUST00000056669,   OTTMUST00000056670,   OTTMUST00000056671,   UC008PQT.1,   XM_001477612_GM15535
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36385,376,801 - 85,378,257 (+)MPROMDB
RGD ID:6881012
Promoter ID:EPDNEW_M3957
Type:multiple initiation site
Name:Gatb_1
Description:Mus musculus glutamyl-tRNA amidotransferase, subunit B , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38385,574,127 - 85,574,187EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2442496 AgrOrtholog
Ensembl Genes ENSMUSG00000028085 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000107672.8 UniProtKB/TrEMBL
  ENSMUST00000107674 ENTREZGENE
  ENSMUST00000107674.2 UniProtKB/TrEMBL
  ENSMUST00000127348 ENTREZGENE
  ENSMUST00000127348.8 UniProtKB/Swiss-Prot
Gene3D-CATH 1.10.10.410 UniProtKB/Swiss-Prot
InterPro Apn/Gln-ADT_bsu UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Asn/Gln-tRNA_amidoTrfase_suB/E UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Asn/Gln-tRNA_Trfase_suB/E_cat UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Asn/Gln_amidotransferase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Asn/Gln_tRNA_amidoTrase-B-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GatB_Yqey_C_2 UniProtKB/Swiss-Prot
  Gln-tRNA_amidoTrfase_suB_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Gln_synth/guanido_kin_cat_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:229487 UniProtKB/Swiss-Prot
MGD MGI:2442496 ENTREZGENE
NCBI Gene 229487 ENTREZGENE
PANTHER GLUTAMYL-TRNA(GLN) AMIDOTRANSFERASE SUBUNIT B, MITOCHONDRIAL UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR11659 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam GatB_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GatB_Yqey UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Gatb PhenoGen
PROSITE GATB UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART GatB_Yqey UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF55931 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF89095 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt GATB_MOUSE UniProtKB/Swiss-Prot
  Q3TLZ6 ENTREZGENE, UniProtKB/TrEMBL
  Q8BMU3 ENTREZGENE
  Q8BUY3 ENTREZGENE
  Q8BW84 ENTREZGENE, UniProtKB/TrEMBL
  Q99JT1 ENTREZGENE
UniProt Secondary Q8BMU3 UniProtKB/Swiss-Prot
  Q8BUY3 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-06-27 Gatb  glutamyl-tRNA amidotransferase subunit B  Gatb  glutamyl-tRNA(Gln) amidotransferase, subunit B  Symbol and/or name change 5135510 APPROVED
2014-09-10 Gatb  glutamyl-tRNA(Gln) amidotransferase, subunit B  Pet112  PET112 homolog (S. cerevisiae)  Symbol and/or name change 5135510 APPROVED
2012-11-27 Pet112  PET112 homolog (S. cerevisiae)  Pet112l  PET112-like (yeast)  Symbol and/or name change 5135510 APPROVED