Ldlrad3 (low density lipoprotein receptor class A domain containing 3) - Rat Genome Database

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Gene: Ldlrad3 (low density lipoprotein receptor class A domain containing 3) Mus musculus
Analyze
Symbol: Ldlrad3
Name: low density lipoprotein receptor class A domain containing 3
RGD ID: 1317277
MGI Page MGI
Description: Enables amyloid-beta binding activity. Acts upstream of or within receptor-mediated endocytosis and regulation of protein processing. Located in plasma membrane. Is expressed in cranial ganglion; dorsal root ganglion; and gut. Orthologous to human LDLRAD3 (low density lipoprotein receptor class A domain containing 3).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 6430500P08; AI194318; low-density lipoprotein receptor class A domain-containing protein 3; Lr; Lrad3
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392101,780,546 - 102,016,805 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2101,780,548 - 102,016,730 (-)EnsemblGRCm39 Ensembl
GRCm382101,950,201 - 102,186,460 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2101,950,203 - 102,186,385 (-)EnsemblGRCm38mm10GRCm38
MGSCv372101,790,358 - 102,026,534 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362101,751,042 - 101,987,199 (-)NCBIMGSCv36mm8
Celera2103,177,515 - 103,425,538 (-)NCBICelera
Cytogenetic Map2E2NCBI
cM Map254.11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
membrane  (IDA)
plasma membrane  (IBA,IDA)

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. MGDs mouse GO annotations MGD data from the GO Consortium
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:12520002   PMID:12904583   PMID:14610273   PMID:15782199   PMID:16141072   PMID:16141073  
PMID:18799693   PMID:21267068   PMID:21795536   PMID:21873635   PMID:26854353   PMID:33208938   PMID:37556325  


Genomics

Comparative Map Data
Ldlrad3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392101,780,546 - 102,016,805 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2101,780,548 - 102,016,730 (-)EnsemblGRCm39 Ensembl
GRCm382101,950,201 - 102,186,460 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2101,950,203 - 102,186,385 (-)EnsemblGRCm38mm10GRCm38
MGSCv372101,790,358 - 102,026,534 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362101,751,042 - 101,987,199 (-)NCBIMGSCv36mm8
Celera2103,177,515 - 103,425,538 (-)NCBICelera
Cytogenetic Map2E2NCBI
cM Map254.11NCBI
LDLRAD3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381135,944,062 - 36,232,136 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1135,943,981 - 36,232,136 (+)EnsemblGRCh38hg38GRCh38
GRCh371135,965,612 - 36,253,686 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361135,922,188 - 36,209,417 (+)NCBINCBI36Build 36hg18NCBI36
Celera1136,112,827 - 36,400,880 (+)NCBICelera
Cytogenetic Map11p13NCBI
HuRef1135,664,007 - 35,952,047 (+)NCBIHuRef
CHM1_11135,964,057 - 36,251,263 (+)NCBICHM1_1
T2T-CHM13v2.01136,082,756 - 36,371,759 (+)NCBIT2T-CHM13v2.0
Ldlrad3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83108,694,528 - 108,936,330 (-)NCBIGRCr8
mRatBN7.2388,239,529 - 88,481,340 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl388,239,622 - 88,481,267 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx391,740,240 - 91,985,132 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03100,339,261 - 100,584,144 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0398,161,670 - 98,403,482 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0391,596,730 - 91,839,054 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl391,527,657 - 91,839,009 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0398,186,015 - 98,191,116 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.0398,255,058 - 98,497,395 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4387,108,483 - 87,275,069 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1387,004,744 - 87,235,986 (-)NCBI
Celera387,346,492 - 87,586,796 (-)NCBICelera
Cytogenetic Map3q31-q32NCBI
Ldlrad3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542210,206,460 - 10,375,940 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542210,206,498 - 10,382,573 (-)NCBIChiLan1.0ChiLan1.0
LDLRAD3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2938,165,014 - 38,452,213 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11138,169,674 - 38,456,822 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01135,917,271 - 36,204,509 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11135,870,059 - 36,079,093 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1135,791,899 - 36,076,358 (+)Ensemblpanpan1.1panPan2
LDLRAD3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11831,900,807 - 32,066,758 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1831,903,095 - 32,061,171 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1831,507,253 - 31,739,703 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01832,510,608 - 32,743,444 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1832,510,618 - 32,743,909 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11832,071,852 - 32,304,387 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01831,657,012 - 31,889,722 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01832,301,948 - 32,535,042 (-)NCBIUU_Cfam_GSD_1.0
Ldlrad3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494728,980,701 - 29,221,217 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365332,105,197 - 2,263,675 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365332,105,844 - 2,263,621 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LDLRAD3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl224,875,380 - 25,138,873 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1224,875,379 - 25,155,314 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2227,321,334 - 27,490,428 (-)NCBISscrofa10.2Sscrofa10.2susScr3
LDLRAD3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1129,017,428 - 29,317,531 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl129,017,115 - 29,317,476 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666038126,151,759 - 126,439,918 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ldlrad3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476711,003,802 - 11,255,878 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476711,003,981 - 11,346,063 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Ldlrad3
9035 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:2376
Count of miRNA genes:583
Interacting mature miRNAs:726
Transcripts:ENSMUST00000058790, ENSMUST00000111222, ENSMUST00000127888
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357881Estoq1_membryo survival total QTL 1 (mouse)Not determined220897778118894840Mouse
1357454Kidq1_mkidney weight QTL 1 (mouse)Not determined220897778118894840Mouse
1357436Splq1_mspleen weight QTL 1 (mouse)Not determined220897778118894840Mouse
39128209Lwq14_mliver weight QTL 14 (mouse)220897778118894840Mouse
1558899Egq1_mearly growth QTL 1 (mouse)Not determined220897778118894840Mouse
1558966W10q9_mweight 10 weeks QTL 9 (mouse)Not determined220897778118894840Mouse
1558915W3q1_mweight 3 weeks QTL 1 (mouse)Not determined220897778118894840Mouse
1558738W6q1_mweight 6 weeks QTL 1 (mouse)Not determined220897778118894840Mouse
1357681Hrtq1_mheart weight QTL 1 (mouse)Not determined220897778118894840Mouse
1302174Dssc2_mdextran sodium sulfate induced colitis QTL2 (mouse)Not determined224224632148700377Mouse
4141854T2dm2sa_mtype 2 diabetes mellitus 2 in SMXA RI mice (mouse)Not determined229307947148374934Mouse
4141236Hbnr5_mHeligmosomoides bakeri nematode resistance 5 (mouse)Not determined31214567105143570Mouse
1301109Dntcs2_mdental caries susceptibility 2 (mouse)Not determined240885493114910165Mouse
1301344Lith1_mlithogenic gene 1 (mouse)Not determined245347635145312647Mouse
1357577Trmq3_mT cell ratio modifier QTL 3 (mouse)Not determined260520612119355518Mouse
13824983Vclq1_mcurvilinear velocity QTL 1 (mouse)261830344136841920Mouse
5491197Mobq5_mmultigenic obesity QTL 5 (mouse)Not determined265269746162518926Mouse
1301882Etohc2_methanol consumption 2 (mouse)Not determined268724269102724407Mouse
1301948Elsgp3_melevated serum gp70 3 (mouse)Not determined268724269102724407Mouse
4142088Parms1_mpatched associated RMS 1 (mouse)Not determined74524117114123532Mouse
11528549Sluc31_msusceptibility to lung cancer 31 (mouse)274524117129213005Mouse
1301374Cplaq7_mcircadian period of locomotor activity 7 (mouse)Not determined276421483110421651Mouse
4141657Mohg1_mmodifier of hg 1 (mouse)Not determined276678758103095823Mouse
10043894Bw22_mbody weight QTL 22 (mouse)Not determined280895334114895334Mouse
15092054Egrme5_mearly growth rate, maternal effect 5 (mouse)282190187118004745Mouse
1558901Skmw8_mskeletal muscle weight 8 (mouse)Not determined284008488118008593Mouse
4141155Plast2b_mplasma plant sterol 2b (mouse)Not determined284013198148522175Mouse
10412082Hylaq1_mHyperlocomotor activity related QTL 1 (mouse)Not determined284013198148667470Mouse
5491196Mobq6_mmultigenic obesity QTL 6 (mouse)Not determined285724269180896594Mouse
11049565Lmr28g_mleishmaniasis resistance 28g (mouse)286095716120095823Mouse
11038697Ltpr2d_mLeishmania tropica response 2d (mouse)286095716120095823Mouse
11038698Ltpr2c_mLeishmania tropica response 2c (mouse)286095716120095823Mouse
1300852Lmr14_mleishmaniasis resistance 14 (mouse)Not determined286095716120095823Mouse
1301834Bits1_mbitterness sensitivity 1 (mouse)Not determined287440643121440778Mouse
11532731Sluc31a_msusceptibility to lung cancer 31a (mouse)288015003122015170Mouse
4142223Femwf4_mfemur work to failure 4 (mouse)Not determined88143423122143570Mouse
1301098Cd8mts3_mCD8 memory T cell subset 3 (mouse)Not determined291089974125090104Mouse
1301909Smdq2_msegregation of mitochondrial DNA QTL 2 (mouse)Not determined292778465126778607Mouse
27226761Feml18_mfemur length 18, 16 week (mouse)294230345154241920Mouse
4141448Mpaps1_mmicrophthalmia anophthalmia susceptibility 1 (mouse)Not determined97028557112115196Mouse
11049569Lmr28d_mleishmaniasis resistance 28d (mouse)297123370131123532Mouse
11049568Lmr28c_mleishmaniasis resistance 28c (mouse)297123370131123532Mouse
12904935Edlmmq2_mextensor digitorum longus muscle mass QTL 2 (mouse)297210364131210364Mouse
12904954Gmmq2_mgastrocnemius muscle mass QTL 2 (mouse)297210364131210364Mouse
25394565Skmw50_mskeletal muscle weight 50, soleus (mouse)297783888102476127Mouse
4141802Ignpq1_mIgA nephropathy QTL 1 (mouse)Not determined2100824060134824269Mouse
1302203Gvhd3_mgraft-versus host disease 3 (mouse)Not determined2100942930134943090Mouse
1301330Tbbmd2_mtotal body bone mineral density 2 (mouse)Not determined2100942930134943090Mouse
1302071Fembrs1_mfemur breaking strength 1 (mouse)Not determined2100942930134943090Mouse

Markers in Region
RH135925  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm382101,952,780 - 101,952,974UniSTSGRCm38
MGSCv372101,792,937 - 101,793,131UniSTSGRCm37
Celera2103,180,344 - 103,180,538UniSTS
Cytogenetic Map2E2UniSTS
D2Mit251  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm382102,172,482 - 102,172,602UniSTSGRCm38
MGSCv372102,012,639 - 102,012,759UniSTSGRCm37
Celera2153,157,807 - 153,157,931UniSTS
Cytogenetic Map2E2UniSTS
cM Map250.3UniSTS
Whitehead Genetic250.3UniSTS
Whitehead_YAC2 UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001290784 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_178886 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006499481 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006499482 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036161917 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AK029683 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK032208 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK135185 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK136473 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK161107 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK184960 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK198364 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK202757 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK204565 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK204962 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK213293 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK219039 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL845300 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BB349367 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC138177 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC138178 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC145174 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BX322585 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BX571894 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466519 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CN527209 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000058790   ⟹   ENSMUSP00000054134
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2101,780,548 - 102,016,730 (-)Ensembl
GRCm38.p6 Ensembl2101,950,203 - 102,186,385 (-)Ensembl
RefSeq Acc Id: ENSMUST00000111222   ⟹   ENSMUSP00000106853
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2101,780,548 - 102,016,703 (-)Ensembl
GRCm38.p6 Ensembl2101,950,203 - 102,186,358 (-)Ensembl
RefSeq Acc Id: ENSMUST00000127888
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2101,941,914 - 101,968,464 (-)Ensembl
GRCm38.p6 Ensembl2102,111,569 - 102,138,119 (-)Ensembl
RefSeq Acc Id: NM_001290784   ⟹   NP_001277713
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392101,780,546 - 102,016,805 (-)NCBI
GRCm382101,950,201 - 102,186,460 (-)NCBI
Celera2103,177,515 - 103,425,621 (-)NCBI
Sequence:
RefSeq Acc Id: NM_178886   ⟹   NP_849217
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392101,780,546 - 102,016,805 (-)NCBI
GRCm382101,950,201 - 102,186,460 (-)NCBI
MGSCv372101,790,358 - 102,026,534 (-)RGD
Celera2103,177,515 - 103,425,621 (-)NCBI
cM Map2 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006499481   ⟹   XP_006499544
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392101,780,548 - 102,016,748 (-)NCBI
GRCm382101,950,203 - 102,186,403 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006499482   ⟹   XP_006499545
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392101,780,548 - 102,016,701 (-)NCBI
GRCm382101,950,203 - 102,186,356 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036161917   ⟹   XP_036017810
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392101,780,548 - 102,016,748 (-)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_849217   ⟸   NM_178886
- Peptide Label: isoform a precursor
- UniProtKB: Q8CCS0 (UniProtKB/Swiss-Prot),   A2AR96 (UniProtKB/Swiss-Prot),   Q8CDR7 (UniProtKB/Swiss-Prot),   A2AR95 (UniProtKB/Swiss-Prot),   B2RR20 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006499544   ⟸   XM_006499481
- Peptide Label: isoform X1
- UniProtKB: A2AR95 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006499545   ⟸   XM_006499482
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: NP_001277713   ⟸   NM_001290784
- Peptide Label: isoform b precursor
- UniProtKB: B7ZND2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000106853   ⟸   ENSMUST00000111222
RefSeq Acc Id: ENSMUSP00000054134   ⟸   ENSMUST00000058790
RefSeq Acc Id: XP_036017810   ⟸   XM_036161917
- Peptide Label: isoform X2
Protein Domains
LDL-receptor class A

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A2AR95-F1-model_v2 AlphaFold A2AR95 1-345 view protein structure

Promoters
RGD ID:6830555
Promoter ID:MM_KWN:30742
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B6
Transcripts:AK006976_1700082C01RIK,   ENSMUST00000111222,   OTTMUST00000035770,   UC008LHU.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv362102,026,081 - 102,026,632 (-)MPROMDB
RGD ID:6878044
Promoter ID:EPDNEW_M2473
Type:initiation region
Name:Ldlrad3_1
Description:Mus musculus low density lipoprotein receptor class A domaincontaining 3 , transcript variant 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm382102,186,361 - 102,186,421EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2138856 AgrOrtholog
Ensembl Genes ENSMUSG00000048058 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000058790 ENTREZGENE
  ENSMUST00000058790.12 UniProtKB/Swiss-Prot
  ENSMUST00000111222 ENTREZGENE
  ENSMUST00000111222.2 UniProtKB/Swiss-Prot
Gene3D-CATH 4.10.400.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro LDL_receptor-like_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  LDLR_class-A_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  LDrepeatLR_classA_rpt UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:241576 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:2138856 ENTREZGENE
NCBI Gene 241576 ENTREZGENE
PANTHER LOW-DENSITY LIPOPROTEIN RECEPTOR CLASS A DOMAIN-CONTAINING PROTEIN 3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  LOW-DENSITY LIPOPROTEIN RECEPTOR-RELATED UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Ldl_recept_a UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Ldlrad3 PhenoGen
PRINTS LDLRECEPTOR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE LDLRA_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  LDLRA_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART LDLa UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF57424 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A2AR95 ENTREZGENE
  A2AR96 ENTREZGENE
  B2RR20 ENTREZGENE, UniProtKB/TrEMBL
  B7ZND2 ENTREZGENE, UniProtKB/TrEMBL
  LRAD3_MOUSE UniProtKB/Swiss-Prot
  Q8CCS0 ENTREZGENE
  Q8CDR7 ENTREZGENE
UniProt Secondary A2AR96 UniProtKB/Swiss-Prot
  Q8CCS0 UniProtKB/Swiss-Prot
  Q8CDR7 UniProtKB/Swiss-Prot