Trak1 (trafficking protein, kinesin binding 1) - Rat Genome Database
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Gene: Trak1 (trafficking protein, kinesin binding 1) Mus musculus
Analyze
Symbol: Trak1
Name: trafficking protein, kinesin binding 1
RGD ID: 1317275
MGI Page MGI
Description: Exhibits GABA receptor binding activity. Involved in anterograde axonal transport of mitochondrion. Predicted to localize to several cellular components, including axonal growth cone; early endosome; and perinuclear region of cytoplasm. Is expressed in several structures, including central nervous system; dorsal root ganglion; liver; spleen; and submandibular gland primordium. Used to study Stiff-Person syndrome. Human ortholog(s) of this gene implicated in early infantile epileptic encephalopathy. Orthologous to human TRAK1 (trafficking kinesin protein 1); PARTICIPATES IN mitochondria transport pathway; INTERACTS WITH 1,2-dimethylhydrazine; 17alpha-ethynylestradiol; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: 2310001H13Rik; AI413908; AI467545; expressed sequence AI413908; hyr; hyrt; mKIAA1042; trafficking kinesin-binding protein 1
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399121,126,568 - 121,303,985 (+)NCBIGRCm39mm39
GRCm389121,297,502 - 121,474,919 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9121,297,502 - 121,474,918 (+)EnsemblGRCm38mm10GRCm38
MGSCv379121,276,076 - 121,384,037 (+)NCBIGRCm37mm9NCBIm37
MGSCv369121,146,230 - 121,304,578 (+)NCBImm8
Celera9121,841,671 - 121,945,742 (+)NCBICelera
Cytogenetic Map9F4NCBI
cM Map972.41NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10512203   PMID:11042159   PMID:11076861   PMID:12477932   PMID:12520002   PMID:12693553   PMID:14610273   PMID:15782199   PMID:15840001   PMID:16141072  
PMID:16141073   PMID:16380713   PMID:18675823   PMID:21267068   PMID:21873635   PMID:23395375  


Genomics

Comparative Map Data
Trak1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399121,126,568 - 121,303,985 (+)NCBIGRCm39mm39
GRCm389121,297,502 - 121,474,919 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9121,297,502 - 121,474,918 (+)EnsemblGRCm38mm10GRCm38
MGSCv379121,276,076 - 121,384,037 (+)NCBIGRCm37mm9NCBIm37
MGSCv369121,146,230 - 121,304,578 (+)NCBImm8
Celera9121,841,671 - 121,945,742 (+)NCBICelera
Cytogenetic Map9F4NCBI
cM Map972.41NCBI
TRAK1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl342,013,802 - 42,225,890 (+)EnsemblGRCh38hg38GRCh38
GRCh38342,013,802 - 42,225,890 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh37342,128,692 - 42,267,382 (+)NCBIGRCh37GRCh37hg19GRCh37
GRCh37342,055,294 - 42,267,382 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36342,107,750 - 42,242,272 (+)NCBINCBI36hg18NCBI36
Celera342,072,033 - 42,206,607 (+)NCBI
Cytogenetic Map3p22.1NCBI
HuRef342,176,308 - 42,310,728 (+)NCBIHuRef
CHM1_1342,083,864 - 42,218,481 (+)NCBICHM1_1
Trak1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.28120,984,445 - 121,139,357 (+)NCBI
Rnor_6.0 Ensembl8130,009,573 - 130,106,382 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.08129,946,596 - 130,106,382 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.08129,143,133 - 129,298,643 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.48126,372,084 - 126,478,493 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.18126,391,732 - 126,498,230 (+)NCBI
Celera8120,183,796 - 120,274,421 (+)NCBICelera
Cytogenetic Map8q32NCBI
Trak1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542028,454,812 - 28,549,489 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542028,457,179 - 28,547,585 (-)NCBIChiLan1.0ChiLan1.0
TRAK1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1342,184,846 - 42,399,066 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl342,262,630 - 42,399,068 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0341,920,678 - 42,135,881 (+)NCBIMhudiblu_PPA_v0panPan3
TRAK1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl2311,266,216 - 11,381,177 (+)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.12311,221,008 - 11,383,242 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Trak1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_00493647330,568,151 - 30,660,753 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TRAK1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1325,773,981 - 25,935,828 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11325,773,345 - 25,934,770 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21328,540,574 - 28,592,253 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TRAK1
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1223,536,589 - 3,668,622 (+)NCBI
ChlSab1.1 Ensembl223,446,484 - 3,668,347 (+)Ensembl
Trak1
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462473077,330,449 - 77,470,156 (-)NCBI

Position Markers
AI413908  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm389121,462,459 - 121,462,567UniSTSGRCm38
MGSCv379121,371,577 - 121,371,685UniSTSGRCm37
Celera9121,933,276 - 121,933,384UniSTS
Cytogenetic Map9F4UniSTS
cM Map971.0UniSTS
Whitehead/MRC_RH91239.51UniSTS
AI467545  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm389121,455,488 - 121,455,603UniSTSGRCm38
MGSCv379121,364,606 - 121,364,721UniSTSGRCm37
Celera9121,926,243 - 121,926,358UniSTS
Cytogenetic Map9F4UniSTS
cM Map971.0UniSTS
Whitehead/MRC_RH91241.23UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
12880422V25Dq6_mvitamin D inactive form serum level QTL 6 (mouse)987800000121800000Mouse
10412242Alpq8_malcohol preference QTL 8 (mouse)Not determined989284925123284925Mouse
1301649Psl1_mpromotion susceptibility QTL 1 (mouse)Not determined989412277123412396Mouse
18182932Metl3_mmetabolite locus 3, N-acetylglutamate (mouse)989563342123563342Mouse
12910770Splic1_mspleen iron content 1 (mouse)991413879124595110Mouse
12910772Lvic6_mliver iron content 6 (mouse)991413879124595110Mouse
12910773Splic3_mspleen iron content 3 (mouse)991413879124595110Mouse
1558767Skmw11_mskeletal muscle weight 11 (mouse)Not determined991641084124595110Mouse
13463474Hbbcq5_mhemoglobin concentration QTL 5 (mouse)991641084124595110Mouse
13463475Hctq7_mhematocrit QTL 7 (mouse)991641084124595110Mouse
13463477Rbc9_mred blood cell count 9 (mouse)991641084124595110Mouse
13463478Mchq18_mmean corpuscular hemoglobin QTL 18 (mouse)991641084124595110Mouse
13463480Mchcq2_mmean corpuscular hemoglobin concentration QTL 2 (mouse)991641084124595110Mouse
12904937Edlmmq9_mextensor digitorum longus muscle mass QTL 9 (mouse)991683173124595110Mouse
12904947Tammq7_mtibialis anterior muscle mass QTL 7 (mouse)991683173124595110Mouse
12904961Gmmq7_mgastrocnemius muscle mass QTL 7 (mouse)991683173124595110Mouse
1302001Bdln5_mbody length 5 (mouse)Not determined993762590124595110Mouse
1301484Bwq6_mbody weight (mouse)Not determined993762590124595110Mouse
14746992Manh67_mmandible shape 67 (mouse)994036768124595110Mouse
11537364Cnes5_mC. neoformans susceptibility locus 5 (mouse)996917590124595110Mouse
1301297Lcho1_mliver cholesterol 1 (mouse)Not determined9101060861124595110Mouse
1357627Tgq2_mtriglyceride QTL 2 (mouse)Not determined9102000187124595110Mouse
1357648Obq18_mobesity QTL 18 (mouse)Not determined9102000187124595110Mouse
1301789Pbwg4_mpostnatal body weight growth 4 (mouse)Not determined9103289445124595110Mouse
10412290Pvacm1l_mplasma vascular cell adhesion molecule 1 levels (mouse)Not determined9103289445124595110Mouse
12879896Berr3_mberghei resistance locus 3 (mouse)9103289445124595110Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:871
Count of miRNA genes:509
Interacting mature miRNAs:614
Transcripts:ENSMUST00000045903
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001357968 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001357969 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001357970 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001357972 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001357973 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_175114 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_152160 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC115863 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC131660 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC163350 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AEKQ02157416 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK008090 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK009063 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK029123 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK041436 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK052264 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK122426 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK166185 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK199111 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC026411 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC043676 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC046285 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC058971 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC082807 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC116262 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC116263 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC129961 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC129962 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BE957084 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY018437 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466587 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000045903   ⟹   ENSMUSP00000044482
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9121,367,016 - 121,474,918 (+)Ensembl
RefSeq Acc Id: ENSMUST00000209211   ⟹   ENSMUSP00000147805
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9121,367,015 - 121,431,525 (+)Ensembl
RefSeq Acc Id: ENSMUST00000209306
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9121,391,961 - 121,400,795 (+)Ensembl
RefSeq Acc Id: ENSMUST00000209390
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9121,297,829 - 121,364,107 (+)Ensembl
RefSeq Acc Id: ENSMUST00000209446   ⟹   ENSMUSP00000148017
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9121,454,296 - 121,472,315 (+)Ensembl
RefSeq Acc Id: ENSMUST00000209995   ⟹   ENSMUSP00000147885
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9121,382,794 - 121,440,692 (+)Ensembl
RefSeq Acc Id: ENSMUST00000210351   ⟹   ENSMUSP00000147571
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9121,403,478 - 121,446,797 (+)Ensembl
RefSeq Acc Id: ENSMUST00000210636   ⟹   ENSMUSP00000148092
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9121,366,968 - 121,445,108 (+)Ensembl
RefSeq Acc Id: ENSMUST00000210798   ⟹   ENSMUSP00000147646
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9121,297,512 - 121,474,916 (+)Ensembl
RefSeq Acc Id: ENSMUST00000211149
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9121,314,238 - 121,391,945 (+)Ensembl
RefSeq Acc Id: ENSMUST00000211187   ⟹   ENSMUSP00000147624
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9121,415,975 - 121,462,610 (+)Ensembl
RefSeq Acc Id: ENSMUST00000211301   ⟹   ENSMUSP00000147604
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9121,297,502 - 121,473,617 (+)Ensembl
RefSeq Acc Id: ENSMUST00000211439   ⟹   ENSMUSP00000148026
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9121,297,534 - 121,455,882 (+)Ensembl
RefSeq Acc Id: ENSMUST00000211699
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9121,297,512 - 121,452,162 (+)Ensembl
RefSeq Acc Id: ENSMUST00000238988   ⟹   ENSMUSP00000158925
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9121,297,512 - 121,472,999 (+)Ensembl
RefSeq Acc Id: NM_001357968   ⟹   NP_001344897
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399121,232,512 - 121,303,985 (+)NCBI
GRCm389121,403,446 - 121,474,919 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001357969   ⟹   NP_001344898
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399121,211,860 - 121,303,985 (+)NCBI
GRCm389121,382,794 - 121,474,919 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001357970   ⟹   NP_001344899
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399121,211,860 - 121,303,985 (+)NCBI
GRCm389121,382,794 - 121,474,919 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001357972   ⟹   NP_001344901
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399121,126,568 - 121,284,948 (+)NCBI
GRCm389121,297,502 - 121,455,882 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001357973   ⟹   NP_001344902
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399121,196,024 - 121,274,174 (+)NCBI
GRCm389121,366,958 - 121,445,108 (+)NCBI
Sequence:
RefSeq Acc Id: NM_175114   ⟹   NP_780323
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399121,196,024 - 121,303,985 (+)NCBI
GRCm389121,366,958 - 121,474,919 (+)NCBI
MGSCv379121,276,076 - 121,384,037 (+)RGD
Celera9121,841,671 - 121,945,742 (+)RGD
cM Map9 ENTREZGENE
Sequence:
RefSeq Acc Id: NR_152160
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399121,126,568 - 121,303,985 (+)NCBI
GRCm389121,297,502 - 121,474,919 (+)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: NP_780323   ⟸   NM_175114
- Peptide Label: isoform 1
- UniProtKB: Q6PD31 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001344901   ⟸   NM_001357972
- Peptide Label: isoform 5
RefSeq Acc Id: NP_001344902   ⟸   NM_001357973
- Peptide Label: isoform 6
RefSeq Acc Id: NP_001344898   ⟸   NM_001357969
- Peptide Label: isoform 3
RefSeq Acc Id: NP_001344899   ⟸   NM_001357970
- Peptide Label: isoform 4
RefSeq Acc Id: NP_001344897   ⟸   NM_001357968
- Peptide Label: isoform 2
RefSeq Acc Id: ENSMUSP00000044482   ⟸   ENSMUST00000045903
RefSeq Acc Id: ENSMUSP00000147604   ⟸   ENSMUST00000211301
RefSeq Acc Id: ENSMUSP00000147624   ⟸   ENSMUST00000211187
RefSeq Acc Id: ENSMUSP00000148026   ⟸   ENSMUST00000211439
RefSeq Acc Id: ENSMUSP00000147646   ⟸   ENSMUST00000210798
RefSeq Acc Id: ENSMUSP00000147571   ⟸   ENSMUST00000210351
RefSeq Acc Id: ENSMUSP00000148092   ⟸   ENSMUST00000210636
RefSeq Acc Id: ENSMUSP00000158925   ⟸   ENSMUST00000238988
RefSeq Acc Id: ENSMUSP00000147885   ⟸   ENSMUST00000209995
RefSeq Acc Id: ENSMUSP00000148017   ⟸   ENSMUST00000209446
RefSeq Acc Id: ENSMUSP00000147805   ⟸   ENSMUST00000209211
Protein Domains
HAP1 N-terminal   Milton

Promoters
RGD ID:6849275
Promoter ID:MM_XEF:7716
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_2Hour,   Brain
Transcripts:NM_001113861
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv369121,273,166 - 121,273,666 (+)MPROMDB
RGD ID:6845275
Promoter ID:MM_KWN:59195
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day4,   Brain,   Lung
Transcripts:NM_175114,   UC009SDE.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv369121,275,431 - 121,276,247 (+)MPROMDB
RGD ID:6848496
Promoter ID:MM_ACW:52468
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day2,   3T3L1_Day4,   3T3L1_Day6,   Brain,   Kidney,   Liver
Transcripts:TRAK1.KSEP07
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv369121,291,851 - 121,292,382 (+)MPROMDB
RGD ID:8671246
Promoter ID:EPDNEW_M13654
Type:initiation region
Name:Trak1_1
Description:Mus musculus trafficking protein, kinesin binding 1 , transcriptvariant 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M13655  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm389121,297,520 - 121,297,580EPDNEW
RGD ID:6848493
Promoter ID:MM_ACW:52469
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain,   Liver
Transcripts:TRAK1.ESEP07
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv369121,312,431 - 121,312,931 (+)MPROMDB
RGD ID:6848497
Promoter ID:MM_ACW:52473
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain,   Kidney,   Liver,   Lung
Transcripts:TRAK1.ISEP07
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv369121,324,736 - 121,325,236 (+)MPROMDB
RGD ID:6848495
Promoter ID:MM_ACW:52475
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_2Hour,   Brain,   Liver,   Lung,   Spleen
Transcripts:TRAK1.GSEP07,   TRAK1.HSEP07
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv369121,362,071 - 121,362,571 (+)MPROMDB
RGD ID:8671248
Promoter ID:EPDNEW_M13655
Type:multiple initiation site
Name:Trak1_2
Description:Mus musculus trafficking protein, kinesin binding 1 , transcriptvariant 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M13654  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm389121,415,977 - 121,416,037EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1914345 AgrOrtholog
Ensembl Genes ENSMUSG00000032536 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000044482 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000147571 UniProtKB/TrEMBL
  ENSMUSP00000147604 UniProtKB/TrEMBL
  ENSMUSP00000147624 UniProtKB/TrEMBL
  ENSMUSP00000147646 UniProtKB/TrEMBL
  ENSMUSP00000147805 UniProtKB/TrEMBL
  ENSMUSP00000147885 UniProtKB/TrEMBL
  ENSMUSP00000148017 UniProtKB/TrEMBL
  ENSMUSP00000148026 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUSP00000148092 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUSP00000158925 UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000045903 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000209211 UniProtKB/TrEMBL
  ENSMUST00000209446 UniProtKB/TrEMBL
  ENSMUST00000209995 UniProtKB/TrEMBL
  ENSMUST00000210351 UniProtKB/TrEMBL
  ENSMUST00000210636 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUST00000210798 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUST00000211187 UniProtKB/TrEMBL
  ENSMUST00000211301 UniProtKB/TrEMBL
  ENSMUST00000211439 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUST00000238988 UniProtKB/TrEMBL
InterPro HAP1_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Traffickng_kinesin-bd_prot_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:67095 UniProtKB/Swiss-Prot
MGD MGI:1914345 ENTREZGENE
NCBI Gene 67095 ENTREZGENE
Pfam HAP1_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Milton UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Trak1 PhenoGen
UniProt A0A1B0GRL4_MOUSE UniProtKB/TrEMBL
  A0A1B0GRP1_MOUSE UniProtKB/TrEMBL
  A0A1B0GRQ7_MOUSE UniProtKB/TrEMBL
  A0A1B0GRS7_MOUSE UniProtKB/TrEMBL
  A0A1B0GS60_MOUSE UniProtKB/TrEMBL
  A0A1B0GSC9_MOUSE UniProtKB/TrEMBL
  A0A1B0GSP3_MOUSE UniProtKB/TrEMBL
  A0A1B0GSQ2_MOUSE UniProtKB/TrEMBL
  A0A5F8MPD8_MOUSE UniProtKB/TrEMBL
  A2VDH1_MOUSE UniProtKB/TrEMBL
  Q3TM26_MOUSE UniProtKB/TrEMBL
  Q63ZV1_MOUSE UniProtKB/TrEMBL
  Q6PD31 ENTREZGENE
  Q80VE1_MOUSE UniProtKB/TrEMBL
  Q8BWK8_MOUSE UniProtKB/TrEMBL
  TRAK1_MOUSE UniProtKB/Swiss-Prot
UniProt Secondary Q8BYA3 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-04-05 Trak1  trafficking protein, kinesin binding 1  AI413908  expressed sequence AI413908  Data Merged 737654 PROVISIONAL