Nfu1 (NFU1 iron-sulfur cluster scaffold) - Rat Genome Database
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) RatMine GViewer (Genome Viewer) Overgo Probe Designer ACP Haplotyper Genome Scanner
Aging & Age-Related Disease Cancer Cardiovascular Disease COVID-19 Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models PhenoMiner (Quantitative Phenotypes) Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes GERRC (Gene Editing Rat Resource Center) Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Poster Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: Nfu1 (NFU1 iron-sulfur cluster scaffold) Mus musculus
Analyze
Symbol: Nfu1
Name: NFU1 iron-sulfur cluster scaffold
RGD ID: 1317242
MGI Page MGI
Description: Is expressed in several structures, including brain; early embryo; genitourinary system; liver; and spleen. Human ortholog(s) of this gene implicated in multiple mitochondrial dysfunctions syndrome 1. Orthologous to human NFU1 (NFU1 iron-sulfur cluster scaffold); PARTICIPATES IN mitochondrial iron-sulfur cluster protein biogenesis pathway; INTERACTS WITH 1,2-dimethylhydrazine; 2,3,7,8-tetrachlorodibenzodioxine; benzo[a]pyrene.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: 0610006G17Rik; CGI-3; CGI-33; Hi; HIRA-interacting protein 5; Hirip5; histone cell cycle regulation defective interacting protein 5; mHIRIP5; NFU1 iron-sulfur cluster scaffold homolog; NFU1 iron-sulfur cluster scaffold homolog, mitochondrial
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Related Pseudogenes: Gm7859  
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39686,986,040 - 87,005,443 (+)NCBIGRCm39mm39
GRCm39 Ensembl686,986,218 - 87,005,443 (+)Ensembl
GRCm38687,009,234 - 87,028,461 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl687,009,236 - 87,028,461 (+)EnsemblGRCm38mm10GRCm38
MGSCv37686,959,830 - 86,978,455 (+)NCBIGRCm37mm9NCBIm37
MGSCv36686,975,538 - 86,994,049 (+)NCBImm8
Celera688,949,192 - 88,967,878 (+)NCBICelera
Cytogenetic Map6D1NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IEA)
cytosol  (ISO)
mitochondrion  (HDA,IBA,ISO)
nucleoplasm  (ISO)
nucleus  (ISO)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:11042159   PMID:11076861   PMID:11342215   PMID:12477932   PMID:12915448   PMID:14610273   PMID:15489334   PMID:16141072   PMID:16141073   PMID:18614015  
PMID:21267068   PMID:21677750   PMID:21731673   PMID:21873635  


Genomics

Comparative Map Data
Nfu1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39686,986,040 - 87,005,443 (+)NCBIGRCm39mm39
GRCm39 Ensembl686,986,218 - 87,005,443 (+)Ensembl
GRCm38687,009,234 - 87,028,461 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl687,009,236 - 87,028,461 (+)EnsemblGRCm38mm10GRCm38
MGSCv37686,959,830 - 86,978,455 (+)NCBIGRCm37mm9NCBIm37
MGSCv36686,975,538 - 86,994,049 (+)NCBImm8
Celera688,949,192 - 88,967,878 (+)NCBICelera
Cytogenetic Map6D1NCBI
NFU1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl269,396,113 - 69,437,628 (-)EnsemblGRCh38hg38GRCh38
GRCh38.p13 Ensembl269,395,750 - 69,437,628 (-)EnsemblGRCh38hg38GRCh38
GRCh38269,395,750 - 69,439,567 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37269,622,882 - 69,666,699 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36269,476,756 - 69,518,257 (-)NCBINCBI36hg18NCBI36
Build 34269,534,905 - 69,576,404NCBI
Celera269,473,252 - 69,514,522 (-)NCBI
Cytogenetic Map2p13.3NCBI
HuRef269,359,753 - 69,401,132 (-)NCBIHuRef
CHM1_1269,552,650 - 69,594,074 (-)NCBICHM1_1
Nfu1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.24119,458,981 - 119,480,162 (+)NCBI
Rnor_6.0 Ensembl4118,814,284 - 118,834,955 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.04118,814,284 - 118,834,955 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.04183,383,769 - 183,404,239 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44121,184,017 - 121,187,110 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.14121,401,604 - 121,432,159 (+)NCBI
Celera4108,428,818 - 108,449,350 (+)NCBICelera
Cytogenetic Map4q34NCBI
Nfu1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542415,647,623 - 15,674,573 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542415,648,213 - 15,671,383 (+)NCBIChiLan1.0ChiLan1.0
NFU1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.12A70,559,872 - 70,600,301 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A70,559,872 - 70,600,301 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v02A69,438,979 - 69,480,470 (-)NCBIMhudiblu_PPA_v0panPan3
NFU1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl1068,134,902 - 68,335,988 (-)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.11068,134,865 - 68,161,841 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Nfu1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_00493649113,680,669 - 13,712,924 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NFU1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl372,983,136 - 73,024,672 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1372,983,075 - 73,013,227 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2376,438,277 - 76,442,256 (-)NCBISscrofa10.2Sscrofa10.2susScr3
NFU1
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11437,690,329 - 37,731,093 (+)NCBI
ChlSab1.1 Ensembl1437,690,656 - 37,730,819 (+)Ensembl
Nfu1
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247623,887,124 - 3,917,406 (+)NCBI

Position Markers
UniSTS:237314  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381568,715,281 - 68,715,600UniSTSGRCm38
MGSCv371568,545,711 - 68,546,030UniSTSGRCm37
Celera1570,235,697 - 70,236,016UniSTS
Cytogenetic Map6D2UniSTS
Cytogenetic Map15D3UniSTS
AU022699  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381568,714,949 - 68,715,196UniSTSGRCm38
MGSCv371568,545,379 - 68,545,626UniSTSGRCm37
Celera1570,235,365 - 70,235,612UniSTS
Cytogenetic Map6D2UniSTS
Cytogenetic Map15D3UniSTS
cM Map1539.6UniSTS
cM Map6 UniSTS
Whitehead/MRC_RH15585.59UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
25440480Moaq2_mmodifier of alien QTL 2 (mouse)61117500000Mouse
26884414Bzwq12_mbi-zygomatic width QTL 12, 16 week (mouse)63400000139100000Mouse
1300556Cia6_mcollagen induced arthritis QTL 6 (mouse)Not determined6446488487426034Mouse
4142126W3q3_mweight 3 weeks QTL 3 (mouse)Not determined450382396656149Mouse
4142361W10q11_mweight 10 weeks QTL 11 (mouse)Not determined450382396656149Mouse
4142271Egq8_mearly growth QTL 8 (mouse)Not determined450382396656149Mouse
4142232W6q4_mweight 6 weeks QTL 4 (mouse)Not determined450382396656149Mouse
1558984Cplaq9_mcircadian period of locomotor activity 9 (mouse)Not determined63866962592607450Mouse
1300618Pgia19_mproteoglycan induced arthritis 19 (mouse)Not determined64531405987426034Mouse
10412157Fl1n_mfatty liver 1 in NSY (mouse)Not determined645314059128835032Mouse
4142259Tabw2_mtally ho associated body weight 2 (mouse)Not determined46935985136423692Mouse
25314319Histh6_mhistamine hypersensitivity 6 (mouse)648720000125360000Mouse
25314320Histh5_mhistamine hypersensitivity 5 (mouse)648720000148450000Mouse
1301962Eila2_methanol induced locomotor activity 2 (mouse)Not determined648726556125356785Mouse
1357683Igf1sl1_mIGF-1 serum levels 1 (mouse)Not determined652161713116155267Mouse
4141028Mclr_mmethylcholanthrene lymphoma resistance (mouse)Not determined5437342788379171Mouse
15039373Adip28_madiposity 28 (mouse)65630821190308211Mouse
15039375Bw41_mbody weight QTL 41 (mouse)65630821190308211Mouse
1558977Skmw10_mskeletal muscle weight 10 (mouse)Not determined65844758392447710Mouse
10043972Obq28_mobesity QTL 28 (mouse)Not determined65854043392540433Mouse
1301740Bwq2_mbody weight QTL 2 (mouse)Not determined66005768094057799Mouse
1301369Im4_mimmunoregulatory 4 (mouse)Not determined66348473897484905Mouse
1300650Bw18_mbody weight QTL 18 (mouse)Not determined666713869100714031Mouse
1301876Bits2_mbitterness sensitivity 2 (mouse)Not determined670425898104426034Mouse
1301813Skl3_mskeletal size (tail length) 3 (mouse)Not determined670425898104426034Mouse
1301034Egrm2_mearly growth rate (mouse)Not determined670425898104426034Mouse
1302020Bbaa20_mB.burgdorferi-associated arthritis 20 (mouse)Not determined67132262193464093Mouse
1300869Stheal5_msoft tissue heal 5 (mouse)Not determined671575060105575178Mouse
1300954Fcsa1_mfemoral cross-sectional area 1 (mouse)Not determined671981024105981170Mouse
1301521Pas1c_mpulmonary adenoma susceptibility 1c (mouse)Not determined671981024105981170Mouse
13506930Recrq9_mrecombination rate in male meiosis QTL 9 (mouse)673500000134700000Mouse
1301320Ots1_movarian teratoma susceptibility 1 (mouse)Not determined675447583104503555Mouse
1301571Arrd1_mage-related retinal degeneration 1 (mouse)Not determined67554435692607450Mouse
1300674Nidd3n_mnon-insulin-dependent diabetes mellitus 3 in NSY (mouse)Not determined67554435694225955Mouse
10412195Efw_mepididymal fat weight (mouse)Not determined67554435694225955Mouse
10043901Pfat5_mpredicted fat percentage 5 (mouse)Not determined675607306109607450Mouse
10412208Cypr4_mcytokine production 4 (mouse)Not determined675716503109716697Mouse
1357875Pfat2_mpredicted fat percentage 2 (mouse)Not determined676463949110464093Mouse
14697704Stsl4_mSalmonella typhimurium susceptibility locus 4 (mouse)67710000090000000Mouse
13824985Alh1_mamplitude of lateral head displacement 1 (mouse)67800000097000000Mouse
4141376Dbm1_mdiabetes modifier 1 (mouse)Not determined678629504121115387Mouse
14696731Pairq1_mP. aeruginosa infection resistance QTL 1 (mouse)681500000102200000Mouse
10043864T2dm4sa_mtype 2 diabetes mellitus 4 in SMXA RI mice (mouse)Not determined683713869147052561Mouse
11251720Ewc4_methanol withdrawal and consumption 4 (mouse)684122513118122513Mouse
1301687Mnic2_mmacronutrient intake (mouse)Not determined686806805113544602Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:630
Count of miRNA genes:344
Interacting mature miRNAs:379
Transcripts:ENSMUST00000032060, ENSMUST00000117583, ENSMUST00000120240, ENSMUST00000127819, ENSMUST00000140343, ENSMUST00000144776
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001170591 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_020045 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006506419 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006506420 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036152244 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036152245 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036152246 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC159712 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ132616 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK002244 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK003730 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK081950 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK145558 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY335195 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC018355 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CD775268 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000032060   ⟹   ENSMUSP00000032060
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl687,009,836 - 87,028,454 (+)Ensembl
RefSeq Acc Id: ENSMUST00000117583   ⟹   ENSMUSP00000113332
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl687,009,836 - 87,028,459 (+)Ensembl
RefSeq Acc Id: ENSMUST00000120240   ⟹   ENSMUSP00000113637
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl687,009,236 - 87,028,461 (+)Ensembl
RefSeq Acc Id: ENSMUST00000127819
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl687,010,003 - 87,025,531 (+)Ensembl
RefSeq Acc Id: ENSMUST00000140343
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl687,009,889 - 87,013,490 (+)Ensembl
RefSeq Acc Id: ENSMUST00000144776   ⟹   ENSMUSP00000121746
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl687,009,889 - 87,023,186 (+)Ensembl
RefSeq Acc Id: ENSMUST00000203512
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl687,009,836 - 87,015,711 (+)Ensembl
RefSeq Acc Id: ENSMUST00000204103
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl687,024,999 - 87,028,461 (+)Ensembl
RefSeq Acc Id: ENSMUST00000205018
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl687,009,880 - 87,012,387 (+)Ensembl
RefSeq Acc Id: NM_001170591   ⟹   NP_001164062
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39686,986,818 - 87,005,443 (+)NCBI
GRCm38687,009,836 - 87,028,461 (+)NCBI
MGSCv37686,959,830 - 86,978,455 (+)RGD
Celera688,949,192 - 88,967,878 (+)RGD
cM Map6 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_020045   ⟹   NP_064429
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39686,986,818 - 87,005,443 (+)NCBI
GRCm38687,009,836 - 87,028,461 (+)NCBI
MGSCv37686,959,830 - 86,978,455 (+)RGD
Celera688,949,192 - 88,967,878 (+)RGD
cM Map6 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006506419   ⟹   XP_006506482
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39686,986,155 - 87,005,443 (+)NCBI
GRCm38687,009,291 - 87,028,461 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006506420   ⟹   XP_006506483
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39686,986,180 - 87,005,443 (+)NCBI
GRCm38687,009,234 - 87,028,461 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036152244   ⟹   XP_036008137
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39686,986,040 - 87,005,443 (+)NCBI
RefSeq Acc Id: XM_036152245   ⟹   XP_036008138
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39686,986,040 - 87,005,443 (+)NCBI
RefSeq Acc Id: XM_036152246   ⟹   XP_036008139
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39686,993,815 - 87,005,443 (+)NCBI
Reference Sequences
RefSeq Acc Id: NP_064429   ⟸   NM_020045
- Peptide Label: isoform 2 precursor
- UniProtKB: Q9QZ23 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001164062   ⟸   NM_001170591
- Peptide Label: isoform 1 precursor
- UniProtKB: Q9QZ23 (UniProtKB/Swiss-Prot),   A0A0N4SUH8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006506482   ⟸   XM_006506419
- Peptide Label: isoform X3
- UniProtKB: Q9QZ23 (UniProtKB/Swiss-Prot),   A0A0N4SUH8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006506483   ⟸   XM_006506420
- Peptide Label: isoform X4
- UniProtKB: Q9QZ23 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSMUSP00000121746   ⟸   ENSMUST00000144776
RefSeq Acc Id: ENSMUSP00000032060   ⟸   ENSMUST00000032060
RefSeq Acc Id: ENSMUSP00000113637   ⟸   ENSMUST00000120240
RefSeq Acc Id: ENSMUSP00000113332   ⟸   ENSMUST00000117583
RefSeq Acc Id: XP_036008137   ⟸   XM_036152244
- Peptide Label: isoform X1
RefSeq Acc Id: XP_036008138   ⟸   XM_036152245
- Peptide Label: isoform X2
RefSeq Acc Id: XP_036008139   ⟸   XM_036152246
- Peptide Label: isoform X5
Protein Domains
Nfu_N

Promoters
RGD ID:6839691
Promoter ID:MM_KWN:46759
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000032060,   ENSMUST00000120240,   NM_020045,   OTTMUST00000073670,   OTTMUST00000073671,   OTTMUST00000073672
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36686,959,599 - 86,960,099 (+)MPROMDB
RGD ID:6890314
Promoter ID:EPDNEW_M8608
Type:multiple initiation site
Name:Nfu1_1
Description:Mus musculus NFU1 iron-sulfur cluster scaffold , transcript variant2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38687,009,886 - 87,009,946EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1913290 AgrOrtholog
Ensembl Genes ENSMUSG00000029993 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000032060 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUSP00000113332 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000113637 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUSP00000121746 UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000032060 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUST00000117583 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000120240 UniProtKB/TrEMBL
  ENSMUST00000144776 UniProtKB/TrEMBL
Gene3D-CATH 3.30.1370.70 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.30.300.130 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro FSCA_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Nfu/NifU_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Nfu/NifU_N_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  NIF_FeS_clus_asmbl_NifU_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:56748 UniProtKB/Swiss-Prot
MGD MGI:1913290 ENTREZGENE
NCBI Gene 56748 ENTREZGENE
Pfam Nfu_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  NifU UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Nfu1 PhenoGen
SMART Nfu_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF110836 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF117916 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0N4SUH8 ENTREZGENE, UniProtKB/TrEMBL
  D3Z285_MOUSE UniProtKB/TrEMBL
  NFU1_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
UniProt Secondary Q3ULE0 UniProtKB/Swiss-Prot
  Q6VNZ7 UniProtKB/Swiss-Prot
  Q8CF80 UniProtKB/Swiss-Prot
  Q9D1B7 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-02-29 Nfu1  NFU1 iron-sulfur cluster scaffold    NFU1 iron-sulfur cluster scaffold homolog (S. cerevisiae)  Symbol and/or name change 5135510 APPROVED