Rnf19a (ring finger protein 19A) - Rat Genome Database

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Gene: Rnf19a (ring finger protein 19A) Mus musculus
Analyze
Symbol: Rnf19a
Name: ring finger protein 19A
RGD ID: 1317215
MGI Page MGI
Description: Predicted to enable ubiquitin conjugating enzyme binding activity and ubiquitin protein ligase activity. Involved in regulation of protein catabolic process at postsynapse, modulating synaptic transmission. Located in postsynapse. Is active in glutamatergic synapse and hippocampal mossy fiber to CA3 synapse. Is expressed in several structures, including central nervous system; dorsal root ganglion; genitourinary system; retina; and tooth. Orthologous to human RNF19A (ring finger protein 19A, RBR E3 ubiquitin protein ligase).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: AA032313; Do; Dorfin; double ring-finger protein; E3 ubiquitin-protein ligase RNF19A; gametogenesis-expressed protein GEG-154; ring finger protein (C3HC4 type) 19; Rnf; Rnf19; Ubce7ip2; UBCM4-interacting protein 117; ubiquitin conjugating enzyme 7 interacting protein 2; UIP117; XY body protein; XYb; XYbp
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Related Pseudogenes: 1700001J11Rik   Gm7435   Gm7444  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391536,240,080 - 36,283,293 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1536,240,079 - 36,283,293 (-)EnsemblGRCm39 Ensembl
GRCm381536,239,934 - 36,283,147 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1536,239,933 - 36,283,147 (-)EnsemblGRCm38mm10GRCm38
MGSCv371536,169,689 - 36,212,902 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361536,184,523 - 36,210,603 (-)NCBIMGSCv36mm8
Celera1536,867,859 - 36,911,292 (-)NCBICelera
Cytogenetic Map15B3.1NCBI
cM Map1514.46NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Mouse brain organization revealed through direct genome-scale TF expression analysis. Gray PA, etal., Science 2004 Dec 24;306(5705):2255-7.
2. MGDs mouse GO annotations MGD data from the GO Consortium
3. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:7616504   PMID:8889548   PMID:10349636   PMID:10431818   PMID:10585566   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12477932   PMID:14610273   PMID:14611647  
PMID:14691545   PMID:15456787   PMID:15489334   PMID:15782199   PMID:16141072   PMID:16141073   PMID:17015433   PMID:17666395   PMID:18287559   PMID:19610091   PMID:21267068   PMID:21873635  
PMID:26553645   PMID:34990937   PMID:37480121  


Genomics

Comparative Map Data
Rnf19a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391536,240,080 - 36,283,293 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1536,240,079 - 36,283,293 (-)EnsemblGRCm39 Ensembl
GRCm381536,239,934 - 36,283,147 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1536,239,933 - 36,283,147 (-)EnsemblGRCm38mm10GRCm38
MGSCv371536,169,689 - 36,212,902 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361536,184,523 - 36,210,603 (-)NCBIMGSCv36mm8
Celera1536,867,859 - 36,911,292 (-)NCBICelera
Cytogenetic Map15B3.1NCBI
cM Map1514.46NCBI
RNF19A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh388100,257,067 - 100,336,204 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl8100,257,060 - 100,336,218 (-)EnsemblGRCh38hg38GRCh38
GRCh378101,269,295 - 101,348,432 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 368101,338,464 - 101,391,503 (-)NCBINCBI36Build 36hg18NCBI36
Celera897,454,658 - 97,507,698 (-)NCBICelera
Cytogenetic Map8q22.2NCBI
HuRef896,472,305 - 96,551,462 (-)NCBIHuRef
CHM1_18101,309,640 - 101,388,798 (-)NCBICHM1_1
T2T-CHM13v2.08101,381,852 - 101,460,987 (-)NCBIT2T-CHM13v2.0
Rnf19a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8769,310,947 - 69,350,567 (-)NCBIGRCr8
mRatBN7.2767,425,833 - 67,465,214 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl767,425,837 - 67,465,222 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx769,314,250 - 69,353,543 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0771,516,874 - 71,556,159 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0771,384,731 - 71,424,020 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0775,058,758 - 75,098,331 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl775,058,758 - 75,098,331 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0775,206,742 - 75,246,247 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4771,763,837 - 71,803,435 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1771,784,571 - 71,808,123 (-)NCBI
Celera764,506,951 - 64,546,140 (-)NCBICelera
Cytogenetic Map7q22NCBI
Rnf19a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541715,492,056 - 15,543,591 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541715,492,056 - 15,543,591 (-)NCBIChiLan1.0ChiLan1.0
RNF19A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v27117,539,786 - 117,657,985 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1893,069,690 - 93,196,775 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0896,897,388 - 96,950,440 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1899,055,223 - 99,123,495 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl899,070,813 - 99,123,495 (-)Ensemblpanpan1.1panPan2
RNF19A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1132,142,126 - 2,170,530 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl132,142,876 - 2,169,944 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha132,139,454 - 2,191,962 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0132,295,177 - 2,347,741 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl132,295,178 - 2,347,665 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1132,139,396 - 2,191,942 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0132,251,412 - 2,303,978 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0132,252,652 - 2,305,208 (-)NCBIUU_Cfam_GSD_1.0
Rnf19a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530335,539,848 - 35,581,388 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647042,965,284 - 43,007,487 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647042,965,790 - 43,007,487 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RNF19A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl436,635,285 - 36,725,638 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1436,654,197 - 36,727,514 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2439,534,798 - 39,647,477 (+)NCBISscrofa10.2Sscrofa10.2susScr3
RNF19A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1895,107,679 - 95,161,592 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl895,105,016 - 95,139,012 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603945,518,394 - 45,572,716 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rnf19a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247637,152,396 - 7,209,652 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247637,153,382 - 7,209,622 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Rnf19a
1215 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:485
Count of miRNA genes:317
Interacting mature miRNAs:380
Transcripts:ENSMUST00000022890
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4141358Ath22_matherosclerosis 22 (mouse)Not determined346465237464652Mouse
10401902Sicd2_mseizure-induced cell death 2 (mouse)Not determined15347438971197538Mouse
4141952W3q7_mweight 3 weeks QTL 7 (mouse)Not determined348969478601286Mouse
4142252Tailaq4_mtail length adjusted QTL 4 (mouse)Not determined348969478601286Mouse
4142448Tailq6_mtail length QTL 6 (mouse)Not determined348969478601286Mouse
1357559Scfq2_msubcutaneous fat pad weight QTL 2 (mouse)Not determined15348969478601286Mouse
1357659Epfpq4_mepididymal fat percentage QTL 4 (mouse)Not determined15348969478601286Mouse
11252136Modvl4_mmodifier of vacuolated lens (mouse)15562049439620614Mouse
26884409Bzwq16_mbi-zygomatic width QTL 16, 16 week (mouse)15612948138000244Mouse
26884384Skwq12_mskull length QTL 12, 16 week (mouse)15612948150763396Mouse
26884387Skwq8_mskull length QTL 8, 10 week (mouse)15612948168271849Mouse
26884412Bzwq10_mbi-zygomatic width QTL 10, 10 week (mouse)15612948171471849Mouse
26884417Bzwq4_mbi-zygomatic width QTL 4, 5 week (mouse)15612948172471849Mouse
27226786Feml11_mfemur length 11, 5 week (mouse)15612948175871849Mouse
27095932Ulnl11_mulna length 11, 16 week (mouse)15612948176384200Mouse
27226717Tibw4_mtibia width 4, proximal, 10 week (mouse)15612948178684200Mouse
27226734Tibmd5_mtibia midshaft diameter 5, 10 week (mouse)15612948186684201Mouse
26884442Sklq6_mskull length QTL 6, 5 week (mouse)156129481100797881Mouse
26884429Zlq6_mzygomatic length QTL 6, 10 week (mouse)15682948144963396Mouse
27226721Tibw8_mtibia width 8, proximal, 16 week (mouse)15692948175871849Mouse
27226773Tibl16_mtibia length 16, 10 week (mouse)15692948175871849Mouse
27226777Tibl8_mtibia length 8, 5 week (mouse)15692948184584201Mouse
27095940Ulnl8_mulna length 8, 10 week (mouse)15722948155263396Mouse
27226759Feml17_mfemur length 17, 10 week (mouse)15762948155263396Mouse
27226755Feml22_mfemur length 22, 16 week (mouse)15762948159271849Mouse
27095922Pglq11_mpelvic girdle length QTL 11, 10 week (mouse)15812948438763395Mouse
26884439Sklq11_mskull length QTL 11, 10 week (mouse)15812948447663396Mouse
10412172Habiir5_mhyperoxic acute lung injury imprinted region 5 (mouse)Not determined15927302243311880Mouse
4140994Shali3_msurvival time to hyperoxic acute lung injury 3 (mouse)Not determined927302243311880Mouse
4141192Ssrq2_mstress response QTL 2 (mouse)Not determined927302256186850Mouse
1301433Rapop5_mradiation-induced apoptosis 5 (mouse)Not determined15927302279474762Mouse
1357526Hyplip2_mhyperlipidemia 2 (mouse)Not determined1512402203102896555Mouse
1301020Pheo_mpheomelanin (mouse)Not determined151384700647847148Mouse
1302165Yv_myellow value (mouse)Not determined151384700647847148Mouse
4141423Nstr2_mnerve sheath tumor resistance QTL 2 (mouse)Not determined1492758748927756Mouse
1301951Eila3_methanol induced locomotor activity 3 (mouse)Not determined151492758748927756Mouse
1302007Bbaa14_mB.burgdorferi-associated arthritis 14 (mouse)Not determined151492758748927756Mouse
1301499Bdln2_mbody length 2 (mouse)Not determined151564534349645470Mouse
12859288Criq1_mCitrobacter rodentium infection QTL 1 (mouse)151603395450033954Mouse
26884423Zlq10_mzygomatic length QTL 10, 16 week (mouse)152060008650763396Mouse
14928313Manh78_mmandible shape 78 (mouse)152148464155484641Mouse
12859289Criq3_mCitrobacter rodentium infection QTL 3 (mouse)152259376556593765Mouse
4142160Femwf10_mfemur work to failure 10 (mouse)Not determined2289301456893160Mouse
1301557Bbaa22_mB.burgdorferi-associated arthritis 22 (mouse)Not determined152446257258462805Mouse
1300967Bdt6_mbone density traits 6 (mouse)Not determined152529580659295928Mouse
4141409Radsvq1_mradiation sensitivity QTL 1 (mouse)Not determined2548497859484978Mouse
1301760Dob9_mdietary obesity 9 (mouse)Body fat amountadiposity index152603568037781301Mouse
1300772Bglq16_mbody growth late QTL 16 (mouse)Not determined152631178060311880Mouse
1301345Bgeq14_mbody growth early QTL 14 (mouse)Not determined152631178060311880Mouse
1357514Mbis3_mMycobacterium bovis-induced systemic lupus erythematosus 3 (mouse)Not determined162631178060311880Mouse
1301406Egrd2_mearly growth rate (mouse)Not determined152631178060311880Mouse
27226800Scvln20_msacral vertebrae length 2, 16 week (mouse)152660008666371849Mouse
1301450Bpq6_mblood pressure QTL 6 (mouse)Not determined152828264662282739Mouse
1357512Bsbob5_mBSB obesity 5 (mouse)Not determined152828264662282739Mouse
26884425Cvht2_mcranial vault height 2, 5 week (mouse)1528800146102008435Mouse
26884392Humsd8_mhumerus midshaft diameter 8, 16 week (mouse)152930014676084200Mouse
26884452Sklq17_mskull length QTL 17, 16 week (mouse)153020014657963396Mouse
1558985Eae32_mexperimental allergic encephalomyelitis susceptibility 32 (mouse)Not determined1532578416103425899Mouse
1300578Cd8ts3_mCD8 T cell subset 3 (mouse)Not determined153400469468004804Mouse
12904003Opfaq12_mopen field activity QTL 12 (mouse)153435891138447901Mouse
1301324Cdif_mcolor difference (mouse)Not determined153597590669976019Mouse

Markers in Region
RH124547  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381536,240,207 - 36,240,343UniSTSGRCm38
MGSCv371536,169,962 - 36,170,098UniSTSGRCm37
Celera1536,868,132 - 36,868,268UniSTS
Cytogenetic Map15B3.1UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001357631 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_013923 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC121577 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC147366 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF071560 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF120206 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF120207 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF360999 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK082665 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK147768 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK166197 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK190444 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC040769 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY207861 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466541 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CN695058 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CO432840 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DV656092 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X71642 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000022890   ⟹   ENSMUSP00000022890
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1536,240,079 - 36,283,293 (-)Ensembl
GRCm38.p6 Ensembl1536,239,933 - 36,283,147 (-)Ensembl
RefSeq Acc Id: ENSMUST00000227735
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1536,265,265 - 36,283,280 (-)Ensembl
GRCm38.p6 Ensembl1536,265,119 - 36,283,134 (-)Ensembl
RefSeq Acc Id: ENSMUST00000228358   ⟹   ENSMUSP00000154617
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1536,240,497 - 36,283,244 (-)Ensembl
GRCm38.p6 Ensembl1536,240,351 - 36,283,098 (-)Ensembl
RefSeq Acc Id: NM_001357631   ⟹   NP_001344560
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391536,240,080 - 36,283,293 (-)NCBI
GRCm381536,239,934 - 36,283,147 (-)NCBI
Sequence:
RefSeq Acc Id: NM_013923   ⟹   NP_038951
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391536,240,080 - 36,283,293 (-)NCBI
GRCm381536,239,934 - 36,283,147 (-)NCBI
MGSCv371536,169,689 - 36,212,902 (-)RGD
Celera1536,867,859 - 36,911,292 (-)RGD
cM Map15 ENTREZGENE
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_038951   ⟸   NM_013923
- Peptide Label: isoform 1
- UniProtKB: Q3UGT2 (UniProtKB/Swiss-Prot),   Q9QUJ5 (UniProtKB/Swiss-Prot),   P50636 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001344560   ⟸   NM_001357631
- Peptide Label: isoform 2
- UniProtKB: A0A2I3BRK4 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSMUSP00000154617   ⟸   ENSMUST00000228358
RefSeq Acc Id: ENSMUSP00000022890   ⟸   ENSMUST00000022890
Protein Domains
RING-type

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P50636-F1-model_v2 AlphaFold P50636 1-840 view protein structure

Promoters
RGD ID:6826428
Promoter ID:MM_KWN:18262
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:NM_013923,   UC007VMR.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361536,212,671 - 36,213,192 (-)MPROMDB
RGD ID:8683590
Promoter ID:EPDNEW_M19826
Type:initiation region
Name:Rnf19a_2
Description:Mus musculus ring finger protein 19A , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M19827  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381536,276,797 - 36,276,857EPDNEW
RGD ID:8683592
Promoter ID:EPDNEW_M19827
Type:initiation region
Name:Rnf19a_1
Description:Mus musculus ring finger protein 19A , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M19826  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381536,283,134 - 36,283,194EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1353623 AgrOrtholog
Ensembl Genes ENSMUSG00000022280 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000022890 ENTREZGENE
  ENSMUST00000022890.10 UniProtKB/Swiss-Prot
  ENSMUST00000228358 ENTREZGENE
  ENSMUST00000228358.2 UniProtKB/TrEMBL
Gene3D-CATH 1.20.120.1750 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  2.20.25.20 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.30.40.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro E3_UB_ligase_RBR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  IBR_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TRIAD_supradom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_C3HC4_RING-type UniProtKB/TrEMBL
  Znf_RING UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_RING/FYVE/PHD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:30945 UniProtKB/Swiss-Prot
MGD MGI:1353623 ENTREZGENE
NCBI Gene 30945 ENTREZGENE
PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF19A UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR11685 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam IBR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  zf-C3HC4 UniProtKB/TrEMBL
PhenoGen Rnf19a PhenoGen
PROSITE TRIAD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZF_RING_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART IBR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RING UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP RING/U-box UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A2I3BRK4 ENTREZGENE, UniProtKB/TrEMBL
  P50636 ENTREZGENE
  Q3TM18_MOUSE UniProtKB/TrEMBL
  Q3UGT2 ENTREZGENE
  Q9QUJ5 ENTREZGENE
  RN19A_MOUSE UniProtKB/Swiss-Prot
UniProt Secondary Q3UGT2 UniProtKB/Swiss-Prot
  Q9QUJ5 UniProtKB/Swiss-Prot