RNF19A (ring finger protein 19A, RBR E3 ubiquitin protein ligase) - Rat Genome Database

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Gene: RNF19A (ring finger protein 19A, RBR E3 ubiquitin protein ligase) Homo sapiens
Analyze
Symbol: RNF19A
Name: ring finger protein 19A, RBR E3 ubiquitin protein ligase
RGD ID: 1317214
HGNC Page HGNC
Description: Predicted to have ubiquitin conjugating enzyme binding activity and ubiquitin protein ligase activity. Predicted to be involved in positive regulation of proteasomal ubiquitin-dependent protein catabolic process; protein polyubiquitination; and ubiquitin-dependent protein catabolic process. Predicted to localize to cytoplasm and ubiquitin ligase complex.
Type: protein-coding
RefSeq Status: REVIEWED
Also known as: DKFZp566B1346; DORFIN; double ring-finger protein; E3 ubiquitin-protein ligase RNF19A; p38 protein; protein p38 interacting with transcription factor Sp1; ring finger protein 19; RING finger protein 19 isoform; ring finger protein 19A, E3 ubiquitin protein ligase; ring-IBR-ring domain containing protein Dorfin; RNF19
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl8100,257,060 - 100,336,218 (-)EnsemblGRCh38hg38GRCh38
GRCh388100,257,062 - 100,336,204 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh378101,269,295 - 101,348,432 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 368101,338,464 - 101,391,503 (-)NCBINCBI36hg18NCBI36
Celera897,454,658 - 97,507,698 (-)NCBI
Cytogenetic Map8q22.2NCBI
HuRef896,472,305 - 96,551,462 (-)NCBIHuRef
CHM1_18101,309,640 - 101,388,798 (-)NCBICHM1_1
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

References

Additional References at PubMed
PMID:10976766   PMID:11237715   PMID:12145308   PMID:12477932   PMID:12750386   PMID:12875980   PMID:14611647   PMID:14702039   PMID:15030390   PMID:15456787   PMID:15489334   PMID:16344560  
PMID:16513638   PMID:17157513   PMID:17666395   PMID:18721867   PMID:19028597   PMID:19517565   PMID:21041692   PMID:21873635   PMID:21900206   PMID:22082156   PMID:22493721   PMID:29643511  
PMID:32814053  


Genomics

Comparative Map Data
RNF19A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl8100,257,060 - 100,336,218 (-)EnsemblGRCh38hg38GRCh38
GRCh388100,257,062 - 100,336,204 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh378101,269,295 - 101,348,432 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 368101,338,464 - 101,391,503 (-)NCBINCBI36hg18NCBI36
Celera897,454,658 - 97,507,698 (-)NCBI
Cytogenetic Map8q22.2NCBI
HuRef896,472,305 - 96,551,462 (-)NCBIHuRef
CHM1_18101,309,640 - 101,388,798 (-)NCBICHM1_1
Rnf19a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391536,240,080 - 36,283,293 (-)NCBIGRCm39mm39
GRCm39 Ensembl1536,240,079 - 36,283,293 (-)Ensembl
GRCm381536,239,934 - 36,283,147 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1536,239,933 - 36,283,147 (-)EnsemblGRCm38mm10GRCm38
MGSCv371536,169,689 - 36,212,902 (-)NCBIGRCm37mm9NCBIm37
MGSCv361536,184,523 - 36,210,603 (-)NCBImm8
Celera1536,867,859 - 36,911,292 (-)NCBICelera
Cytogenetic Map15B3.1NCBI
Rnf19a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2767,425,833 - 67,465,214 (-)NCBI
Rnor_6.0 Ensembl775,058,758 - 75,098,331 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0775,058,758 - 75,098,331 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0775,206,742 - 75,246,247 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4771,763,837 - 71,803,435 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1771,784,571 - 71,808,123 (-)NCBI
Celera764,506,951 - 64,546,140 (-)NCBICelera
Cytogenetic Map7q22NCBI
Rnf19a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541715,492,056 - 15,543,591 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541715,492,056 - 15,543,591 (-)NCBIChiLan1.0ChiLan1.0
RNF19A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1899,055,223 - 99,123,495 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl899,070,813 - 99,123,495 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0896,897,388 - 96,950,440 (-)NCBIMhudiblu_PPA_v0panPan3
RNF19A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1132,142,126 - 2,170,530 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl132,142,876 - 2,169,944 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha132,139,454 - 2,191,962 (-)NCBI
ROS_Cfam_1.0132,295,177 - 2,347,741 (-)NCBI
UMICH_Zoey_3.1132,139,396 - 2,191,942 (-)NCBI
UNSW_CanFamBas_1.0132,251,412 - 2,303,978 (-)NCBI
UU_Cfam_GSD_1.0132,252,652 - 2,305,208 (-)NCBI
Rnf19a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530335,539,848 - 35,581,388 (+)NCBI
SpeTri2.0NW_00493647042,965,790 - 43,007,487 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RNF19A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl436,635,285 - 36,725,638 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1436,654,197 - 36,727,514 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2439,534,798 - 39,647,477 (+)NCBISscrofa10.2Sscrofa10.2susScr3
RNF19A
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1895,107,679 - 95,161,592 (-)NCBI
ChlSab1.1 Ensembl895,105,016 - 95,139,012 (-)Ensembl
Rnf19a
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247637,153,382 - 7,209,622 (-)NCBI

Position Markers
RH92127  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh378101,283,473 - 101,283,625UniSTSGRCh37
Build 368101,352,649 - 101,352,801RGDNCBI36
Celera897,468,843 - 97,468,995RGD
Cytogenetic Map8q22UniSTS
HuRef896,486,491 - 96,486,643UniSTS
GeneMap99-GB4 RH Map8438.29UniSTS
RNF19_801  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh378101,269,121 - 101,269,965UniSTSGRCh37
Build 368101,338,297 - 101,339,141RGDNCBI36
Celera897,454,491 - 97,455,335RGD
HuRef896,472,139 - 96,472,983UniSTS
D3S4097  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37361,576,269 - 61,576,543UniSTSGRCh37
GRCh377157,137,955 - 157,138,800UniSTSGRCh37
Build 36361,551,309 - 61,551,583RGDNCBI36
Celera361,589,171 - 61,589,445RGD
Celera7151,565,007 - 151,565,851UniSTS
Cytogenetic Map8q22UniSTS
HuRef1323,620,561 - 23,622,046UniSTS
HuRef361,674,861 - 61,675,135UniSTS
CRA_TCAGchr7v27156,367,261 - 156,368,105UniSTS
SHGC-37498  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh378101,269,316 - 101,269,444UniSTSGRCh37
Build 368101,338,492 - 101,338,620RGDNCBI36
Celera897,454,686 - 97,454,814RGD
Cytogenetic Map8q22UniSTS
HuRef896,472,334 - 96,472,462UniSTS
Stanford-G3 RH Map83537.0UniSTS
NCBI RH Map81012.3UniSTS
GeneMap99-G3 RH Map83627.0UniSTS
RH18438  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh378101,315,763 - 101,315,875UniSTSGRCh37
Build 368101,384,939 - 101,385,051RGDNCBI36
Celera897,501,134 - 97,501,246RGD
Cytogenetic Map8q22UniSTS
HuRef896,518,780 - 96,518,892UniSTS
GeneMap99-GB4 RH Map8439.32UniSTS
D8S1650  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh378101,308,081 - 101,308,234UniSTSGRCh37
Build 368101,377,257 - 101,377,410RGDNCBI36
Celera897,493,452 - 97,493,605RGD
Cytogenetic Map8q22UniSTS
HuRef896,511,098 - 96,511,251UniSTS
Whitehead-YAC Contig Map8 UniSTS
RNF19  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh378101,300,240 - 101,300,457UniSTSGRCh37
Celera897,485,611 - 97,485,828UniSTS
HuRef896,503,257 - 96,503,474UniSTS

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:2354
Count of miRNA genes:990
Interacting mature miRNAs:1184
Transcripts:ENST00000341084, ENST00000432381, ENST00000517584, ENST00000519342, ENST00000519449, ENST00000519527, ENST00000520071, ENST00000520903, ENST00000522182, ENST00000522369, ENST00000523167, ENST00000523255, ENST00000523481, ENST00000523644, ENST00000524233
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system visual system adipose tissue appendage entire extraembryonic component pharyngeal arch
High
Medium 2404 2297 1562 526 1485 370 4151 1863 3020 390 1429 1594 168 1202 2649 4
Low 31 692 161 97 464 94 205 333 691 29 29 16 5 1 2 139 1 1
Below cutoff 2 2 1 1 12 1 3 2

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001280539 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001353837 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001353838 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_015435 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_183419 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011516956 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017013302 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017013303 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017013304 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_024447118 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_024447119 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_024447120 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_928315 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB029316 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB271913 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB271914 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC025647 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ242975 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK023455 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK027070 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK057699 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL110253 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL122096 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL708565 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AP001574 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC043648 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC062676 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC093938 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC093940 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC105300 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BQ003778 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471060 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DA502897 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DB037264 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DB061830 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENST00000341084   ⟹   ENSP00000342667
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8100,257,067 - 100,309,953 (-)Ensembl
RefSeq Acc Id: ENST00000432381   ⟹   ENSP00000397305
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8100,287,907 - 100,303,230 (-)Ensembl
RefSeq Acc Id: ENST00000517584   ⟹   ENSP00000429161
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8100,287,907 - 100,303,230 (-)Ensembl
RefSeq Acc Id: ENST00000519342
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8100,300,578 - 100,310,148 (-)Ensembl
RefSeq Acc Id: ENST00000519449   ⟹   ENSP00000428968
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8100,257,060 - 100,303,259 (-)Ensembl
RefSeq Acc Id: ENST00000519527   ⟹   ENSP00000431077
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8100,287,678 - 100,336,185 (-)Ensembl
RefSeq Acc Id: ENST00000520071
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8100,261,723 - 100,264,580 (-)Ensembl
RefSeq Acc Id: ENST00000520903
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8100,258,885 - 100,260,040 (-)Ensembl
RefSeq Acc Id: ENST00000522182
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8100,300,543 - 100,336,218 (-)Ensembl
RefSeq Acc Id: ENST00000522369   ⟹   ENSP00000429841
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8100,287,835 - 100,336,204 (-)Ensembl
RefSeq Acc Id: ENST00000523167   ⟹   ENSP00000429549
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8100,287,705 - 100,309,526 (-)Ensembl
RefSeq Acc Id: ENST00000523255
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8100,259,063 - 100,268,920 (-)Ensembl
RefSeq Acc Id: ENST00000523481   ⟹   ENSP00000430553
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8100,288,131 - 100,309,910 (-)Ensembl
RefSeq Acc Id: ENST00000523644
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8100,259,164 - 100,264,080 (-)Ensembl
RefSeq Acc Id: ENST00000524233
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl8100,268,604 - 100,275,034 (-)Ensembl
RefSeq Acc Id: NM_001280539   ⟹   NP_001267468
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh388100,257,067 - 100,336,204 (-)NCBI
HuRef896,472,305 - 96,551,462 (-)NCBI
CHM1_18101,309,640 - 101,388,798 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001353837   ⟹   NP_001340766
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh388100,257,067 - 100,302,193 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001353838   ⟹   NP_001340767
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh388100,257,067 - 100,309,375 (-)NCBI
Sequence:
RefSeq Acc Id: NM_015435   ⟹   NP_056250
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh388100,257,067 - 100,303,259 (-)NCBI
GRCh378101,269,285 - 101,348,446 (-)NCBI
Build 368101,338,464 - 101,384,663 (-)NCBI Archive
HuRef896,472,305 - 96,551,462 (-)NCBI
CHM1_18101,309,640 - 101,355,840 (-)NCBI
Sequence:
RefSeq Acc Id: NM_183419   ⟹   NP_904355
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh388100,257,067 - 100,309,953 (-)NCBI
GRCh378101,269,285 - 101,348,446 (-)NCBI
Build 368101,338,464 - 101,391,503 (-)NCBI Archive
HuRef896,472,305 - 96,551,462 (-)NCBI
CHM1_18101,309,640 - 101,362,747 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011516956   ⟹   XP_011515258
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh388100,257,062 - 100,310,096 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017013302   ⟹   XP_016868791
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh388100,257,342 - 100,310,009 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017013303   ⟹   XP_016868792
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh388100,257,342 - 100,309,948 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017013304   ⟹   XP_016868793
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh388100,257,062 - 100,303,401 (-)NCBI
Sequence:
RefSeq Acc Id: XM_024447118   ⟹   XP_024302886
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh388100,257,342 - 100,309,952 (-)NCBI
Sequence:
RefSeq Acc Id: XM_024447119   ⟹   XP_024302887
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh388100,257,342 - 100,309,946 (-)NCBI
Sequence:
RefSeq Acc Id: XM_024447120   ⟹   XP_024302888
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh388100,257,062 - 100,310,059 (-)NCBI
Sequence:
RefSeq Acc Id: XR_928315
RefSeq Status:
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh388100,257,062 - 100,310,096 (-)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: NP_904355   ⟸   NM_183419
- UniProtKB: Q9NV58 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_056250   ⟸   NM_015435
- UniProtKB: Q9NV58 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001267468   ⟸   NM_001280539
- UniProtKB: Q9NV58 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_011515258   ⟸   XM_011516956
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_016868793   ⟸   XM_017013304
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_016868791   ⟸   XM_017013302
- Peptide Label: isoform X1
- UniProtKB: Q9NV58 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_016868792   ⟸   XM_017013303
- Peptide Label: isoform X1
- UniProtKB: Q9NV58 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001340767   ⟸   NM_001353838
- Sequence:
RefSeq Acc Id: NP_001340766   ⟸   NM_001353837
- Sequence:
RefSeq Acc Id: XP_024302888   ⟸   XM_024447120
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_024302886   ⟸   XM_024447118
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_024302887   ⟸   XM_024447119
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: ENSP00000429161   ⟸   ENST00000517584
RefSeq Acc Id: ENSP00000428968   ⟸   ENST00000519449
RefSeq Acc Id: ENSP00000431077   ⟸   ENST00000519527
RefSeq Acc Id: ENSP00000429841   ⟸   ENST00000522369
RefSeq Acc Id: ENSP00000430553   ⟸   ENST00000523481
RefSeq Acc Id: ENSP00000429549   ⟸   ENST00000523167
RefSeq Acc Id: ENSP00000397305   ⟸   ENST00000432381
RefSeq Acc Id: ENSP00000342667   ⟸   ENST00000341084

Promoters
RGD ID:7213891
Promoter ID:EPDNEW_H12691
Type:multiple initiation site
Name:RNF19A_2
Description:ring finger protein 19A, RBR E3 ubiquitin protein ligase
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H12692  EPDNEW_H12693  
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh388100,294,009 - 100,294,069EPDNEW
RGD ID:7213893
Promoter ID:EPDNEW_H12692
Type:initiation region
Name:RNF19A_3
Description:ring finger protein 19A, RBR E3 ubiquitin protein ligase
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H12691  EPDNEW_H12693  
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh388100,303,225 - 100,303,285EPDNEW
RGD ID:7213895
Promoter ID:EPDNEW_H12693
Type:initiation region
Name:RNF19A_1
Description:ring finger protein 19A, RBR E3 ubiquitin protein ligase
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H12691  EPDNEW_H12692  
Experiment Methods:Single-end sequencing.; Paired-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh388100,336,244 - 100,336,304EPDNEW
RGD ID:6806631
Promoter ID:HG_KWN:61804
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   Lymphoblastoid
Transcripts:ENST00000395984
Position:
Human AssemblyChrPosition (strand)Source
Build 368101,368,961 - 101,370,047 (-)MPROMDB
RGD ID:6807034
Promoter ID:HG_KWN:61805
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Lymphoblastoid
Transcripts:NM_015435,   UC003YJL.1
Position:
Human AssemblyChrPosition (strand)Source
Build 368101,384,581 - 101,385,097 (-)MPROMDB
RGD ID:6807003
Promoter ID:HG_KWN:61806
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   CD4+TCell_12Hour,   CD4+TCell_2Hour,   HeLa_S3,   Jurkat,   K562,   Lymphoblastoid,   NB4
Transcripts:NM_183419
Position:
Human AssemblyChrPosition (strand)Source
Build 368101,391,286 - 101,391,932 (-)MPROMDB

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 8q22.2-22.3(chr8:100023254-101190270)x3 copy number gain See cases [RCV000050759] Chr8:100023254..101190270 [GRCh38]
Chr8:101035482..102202498 [GRCh37]
Chr8:101104658..102271674 [NCBI36]
Chr8:8q22.2-22.3
pathogenic
GRCh38/hg38 8p23.3-q24.3(chr8:241530-145049449)x3 copy number gain See cases [RCV000051206] Chr8:241530..145049449 [GRCh38]
Chr8:191530..146274835 [GRCh37]
Chr8:181530..146245639 [NCBI36]
Chr8:8p23.3-q24.3
pathogenic
GRCh38/hg38 8q22.1-24.3(chr8:95606052-145054775)x3 copy number gain Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053677]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053677]|See cases [RCV000053677] Chr8:95606052..145054775 [GRCh38]
Chr8:96618280..146280161 [GRCh37]
Chr8:96687456..146250965 [NCBI36]
Chr8:8q22.1-24.3
pathogenic
GRCh38/hg38 8p23.3-q24.3(chr8:244417-145054775)x3 copy number gain Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053604]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053604]|See cases [RCV000053604] Chr8:244417..145054775 [GRCh38]
Chr8:194417..146280161 [GRCh37]
Chr8:184417..146250965 [NCBI36]
Chr8:8p23.3-q24.3
pathogenic
GRCh38/hg38 8p23.3-q24.3(chr8:241530-145054634)x3 copy number gain See cases [RCV000053602] Chr8:241530..145054634 [GRCh38]
Chr8:191530..146280020 [GRCh37]
Chr8:181530..146250824 [NCBI36]
Chr8:8p23.3-q24.3
pathogenic
NM_015435.4(RNF19A):c.208C>T (p.Leu70=) single nucleotide variant Malignant melanoma [RCV000068049] Chr8:100287967 [GRCh38]
Chr8:101300195 [GRCh37]
Chr8:101369371 [NCBI36]
Chr8:8q22.2
not provided
NM_015435.4(RNF19A):c.2452G>A (p.Glu818Lys) single nucleotide variant Malignant melanoma [RCV000061717] Chr8:100258621 [GRCh38]
Chr8:101270849 [GRCh37]
Chr8:101340025 [NCBI36]
Chr8:8q22.2
not provided
GRCh38/hg38 8q22.1-24.3(chr8:94682154-145068656)x3 copy number gain See cases [RCV000134353] Chr8:94682154..145068656 [GRCh38]
Chr8:95694382..146294042 [GRCh37]
Chr8:95763558..146264846 [NCBI36]
Chr8:8q22.1-24.3
pathogenic
GRCh38/hg38 8q21.3-24.23(chr8:86300584-137022587)x3 copy number gain See cases [RCV000135621] Chr8:86300584..137022587 [GRCh38]
Chr8:87312813..138034830 [GRCh37]
Chr8:87381929..138104012 [NCBI36]
Chr8:8q21.3-24.23
pathogenic|likely pathogenic
GRCh38/hg38 8q22.2-22.3(chr8:99580206-101547228)x1 copy number loss See cases [RCV000137322] Chr8:99580206..101547228 [GRCh38]
Chr8:100592434..102559456 [GRCh37]
Chr8:100661610..102628632 [NCBI36]
Chr8:8q22.2-22.3
likely pathogenic
GRCh38/hg38 8p23.3-q24.3(chr8:241605-145054781)x3 copy number gain See cases [RCV000138643] Chr8:241605..145054781 [GRCh38]
Chr8:191605..146280167 [GRCh37]
Chr8:181605..146250971 [NCBI36]
Chr8:8p23.3-q24.3
pathogenic
GRCh38/hg38 8q21.3-24.3(chr8:87931152-145068712)x3 copy number gain See cases [RCV000138551] Chr8:87931152..145068712 [GRCh38]
Chr8:88943380..146294098 [GRCh37]
Chr8:89012496..146264902 [NCBI36]
Chr8:8q21.3-24.3
pathogenic
GRCh38/hg38 8q21.13-24.3(chr8:77480050-145068712)x3 copy number gain See cases [RCV000139036] Chr8:77480050..145068712 [GRCh38]
Chr8:78392286..146294098 [GRCh37]
Chr8:78554841..146264902 [NCBI36]
Chr8:8q21.13-24.3
pathogenic
GRCh38/hg38 8q22.1-24.3(chr8:97382873-145070385)x3 copy number gain See cases [RCV000140447] Chr8:97382873..145070385 [GRCh38]
Chr8:98395101..146295771 [GRCh37]
Chr8:98464277..146266575 [NCBI36]
Chr8:8q22.1-24.3
pathogenic
GRCh38/hg38 8q11.1-24.3(chr8:46031340-139285494)x3 copy number gain See cases [RCV000139539] Chr8:46031340..139285494 [GRCh38]
Chr8:46942962..140297737 [GRCh37]
Chr8:47062127..140366919 [NCBI36]
Chr8:8q11.1-24.3
pathogenic
GRCh38/hg38 8q22.2-23.1(chr8:100179408-106524667)x1 copy number loss See cases [RCV000141697] Chr8:100179408..106524667 [GRCh38]
Chr8:101191636..107536895 [GRCh37]
Chr8:101260812..107606071 [NCBI36]
Chr8:8q22.2-23.1
pathogenic
GRCh38/hg38 8p23.3-q24.3(chr8:208048-145070385)x3 copy number gain See cases [RCV000141808] Chr8:208048..145070385 [GRCh38]
Chr8:158048..146295771 [GRCh37]
Chr8:148048..146266575 [NCBI36]
Chr8:8p23.3-q24.3
pathogenic
GRCh38/hg38 8p21.3-q24.3(chr8:21291522-145070385)x3 copy number gain See cases [RCV000142021] Chr8:21291522..145070385 [GRCh38]
Chr8:21149033..146295771 [GRCh37]
Chr8:21193313..146266575 [NCBI36]
Chr8:8p21.3-q24.3
pathogenic
GRCh38/hg38 8p23.3-q24.3(chr8:226452-145068712)x3 copy number gain See cases [RCV000142858] Chr8:226452..145068712 [GRCh38]
Chr8:176452..146294098 [GRCh37]
Chr8:166452..146264902 [NCBI36]
Chr8:8p23.3-q24.3
pathogenic
GRCh38/hg38 8q21.13-24.3(chr8:78614077-145054634)x3 copy number gain See cases [RCV000142597] Chr8:78614077..145054634 [GRCh38]
Chr8:79526312..146280020 [GRCh37]
Chr8:79688867..146250824 [NCBI36]
Chr8:8q21.13-24.3
pathogenic
GRCh38/hg38 8p23.3-q24.3(chr8:241530-145054634)x3 copy number gain See cases [RCV000148092] Chr8:241530..145054634 [GRCh38]
Chr8:191530..146280020 [GRCh37]
Chr8:181530..146250824 [NCBI36]
Chr8:8p23.3-q24.3
pathogenic
GRCh38/hg38 8q21.2-24.3(chr8:85765999-145070385)x3 copy number gain See cases [RCV000143659] Chr8:85765999..145070385 [GRCh38]
Chr8:86778228..146295771 [GRCh37]
Chr8:86863079..146266575 [NCBI36]
Chr8:8q21.2-24.3
pathogenic
GRCh37/hg19 8p12-q24.3(chr8:31936551-146295771)x3 copy number gain not provided [RCV000848192] Chr8:31936551..146295771 [GRCh37]
Chr8:8p12-q24.3
pathogenic
GRCh37/hg19 8p23.3-q24.3(chr8:158991-146280828)x3 copy number gain See cases [RCV000447507] Chr8:158991..146280828 [GRCh37]
Chr8:8p23.3-q24.3
pathogenic
GRCh37/hg19 8q22.1-24.3(chr8:98432250-146222672)x4 copy number gain See cases [RCV000448954] Chr8:98432250..146222672 [GRCh37]
Chr8:8q22.1-24.3
pathogenic
GRCh37/hg19 8p23.3-q24.3(chr8:158049-146295771) copy number gain See cases [RCV000510234] Chr8:158049..146295771 [GRCh37]
Chr8:8p23.3-q24.3
pathogenic
GRCh37/hg19 8q21.3-24.3(chr8:93047482-141355635)x3 copy number gain See cases [RCV000511761] Chr8:93047482..141355635 [GRCh37]
Chr8:8q21.3-24.3
pathogenic
GRCh37/hg19 8p23.3-q24.3(chr8:158049-146295771)x3 copy number gain See cases [RCV000511095] Chr8:158049..146295771 [GRCh37]
Chr8:8p23.3-q24.3
pathogenic
GRCh37/hg19 8q21.2-24.3(chr8:86841154-146295771)x3 copy number gain See cases [RCV000511002] Chr8:86841154..146295771 [GRCh37]
Chr8:8q21.2-24.3
pathogenic
GRCh37/hg19 8q21.2-24.3(chr8:86841228-142689874)x3 copy number gain See cases [RCV000510854] Chr8:86841228..142689874 [GRCh37]
Chr8:8q21.2-24.3
pathogenic
GRCh37/hg19 8p23.1-q24.3(chr8:12490999-146295771)x3 copy number gain See cases [RCV000512169] Chr8:12490999..146295771 [GRCh37]
Chr8:8p23.1-q24.3
pathogenic
GRCh37/hg19 8q22.2-22.3(chr8:100551211-103676738)x1 copy number loss not provided [RCV000683023] Chr8:100551211..103676738 [GRCh37]
Chr8:8q22.2-22.3
pathogenic
GRCh37/hg19 8q21.2-23.3(chr8:86841154-116518125)x3 copy number gain not provided [RCV000683045] Chr8:86841154..116518125 [GRCh37]
Chr8:8q21.2-23.3
pathogenic
GRCh37/hg19 8p23.3-q24.3(chr8:164984-146293414)x3 copy number gain not provided [RCV000747254] Chr8:164984..146293414 [GRCh37]
Chr8:8p23.3-q24.3
pathogenic
GRCh37/hg19 8p23.3-q24.3(chr8:10213-146293414)x3 copy number gain not provided [RCV000747248] Chr8:10213..146293414 [GRCh37]
Chr8:8p23.3-q24.3
pathogenic
GRCh37/hg19 8p23.3-q24.3(chr8:158048-146295771)x3 copy number gain not provided [RCV000848478] Chr8:158048..146295771 [GRCh37]
Chr8:8p23.3-q24.3
pathogenic
GRCh37/hg19 8q22.2(chr8:100791383-101278033)x3 copy number gain not provided [RCV001006126] Chr8:100791383..101278033 [GRCh37]
Chr8:8q22.2
uncertain significance
NM_183419.4(RNF19A):c.591G>A (p.Leu197=) single nucleotide variant not provided [RCV000975189] Chr8:100287584 [GRCh38]
Chr8:101299812 [GRCh37]
Chr8:8q22.2
benign

Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:13432 AgrOrtholog
COSMIC RNF19A COSMIC
Ensembl Genes ENSG00000034677 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSP00000342667 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSP00000397305 UniProtKB/TrEMBL
  ENSP00000428968 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSP00000429161 UniProtKB/TrEMBL
  ENSP00000429549 UniProtKB/TrEMBL
  ENSP00000429841 UniProtKB/TrEMBL
  ENSP00000430553 UniProtKB/TrEMBL
  ENSP00000431077 UniProtKB/TrEMBL
Ensembl Transcript ENST00000341084 ENTREZGENE, UniProtKB/Swiss-Prot
  ENST00000432381 UniProtKB/TrEMBL
  ENST00000517584 UniProtKB/TrEMBL
  ENST00000519449 ENTREZGENE, UniProtKB/Swiss-Prot
  ENST00000519527 UniProtKB/TrEMBL
  ENST00000522369 UniProtKB/TrEMBL
  ENST00000523167 UniProtKB/TrEMBL
  ENST00000523481 UniProtKB/TrEMBL
Gene3D-CATH 3.30.40.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
GTEx ENSG00000034677 GTEx
HGNC ID HGNC:13432 ENTREZGENE
Human Proteome Map RNF19A Human Proteome Map
InterPro E3_UB_ligase_RBR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  IBR_dom UniProtKB/Swiss-Prot
  TRIAD_supradom UniProtKB/Swiss-Prot
  Znf_RING UniProtKB/Swiss-Prot
  Znf_RING/FYVE/PHD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report hsa:25897 UniProtKB/Swiss-Prot
NCBI Gene 25897 ENTREZGENE
OMIM 607119 OMIM
PANTHER PTHR11685 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam IBR UniProtKB/Swiss-Prot
PharmGKB PA162401601 PharmGKB
PROSITE TRIAD UniProtKB/Swiss-Prot
  ZF_RING_2 UniProtKB/Swiss-Prot
SMART IBR UniProtKB/Swiss-Prot
  RING UniProtKB/Swiss-Prot
UniProt A0A0C4DGD6_HUMAN UniProtKB/TrEMBL
  A3KCU8_HUMAN UniProtKB/TrEMBL
  E5RJH6_HUMAN UniProtKB/TrEMBL
  E7EQ63_HUMAN UniProtKB/TrEMBL
  E7EQV8_HUMAN UniProtKB/TrEMBL
  E7ETB2_HUMAN UniProtKB/TrEMBL
  L8E8P4_HUMAN UniProtKB/TrEMBL
  Q3MHC3_HUMAN UniProtKB/TrEMBL
  Q3ZCS9_HUMAN UniProtKB/TrEMBL
  Q9NV58 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary A3KCU9 UniProtKB/Swiss-Prot
  Q52LG1 UniProtKB/Swiss-Prot
  Q9H5H9 UniProtKB/Swiss-Prot
  Q9H8M8 UniProtKB/Swiss-Prot
  Q9UFG0 UniProtKB/Swiss-Prot
  Q9UFX6 UniProtKB/Swiss-Prot
  Q9Y4Y1 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-10-22 RNF19A  ring finger protein 19A, RBR E3 ubiquitin protein ligase  RNF19A  ring finger protein 19A, E3 ubiquitin protein ligase  Symbol and/or name change 5135510 APPROVED
2012-03-06 RNF19A  ring finger protein 19A, E3 ubiquitin protein ligase  RNF19A  ring finger protein 19A, E3 ubiquitin protein ligase  Symbol and/or name change 5135510 APPROVED
2012-03-01 RNF19A  ring finger protein 19A, E3 ubiquitin protein ligase  RNF19A  ring finger protein 19A  Symbol and/or name change 5135510 APPROVED