COMMD7 (COMM domain containing 7) - Rat Genome Database

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Gene: COMMD7 (COMM domain containing 7) Homo sapiens
Analyze
Symbol: COMMD7
Name: COMM domain containing 7
RGD ID: 1317181
HGNC Page HGNC:16223
Description: Enables NF-kappaB binding activity. Involved in negative regulation of DNA-templated transcription and tumor necrosis factor-mediated signaling pathway. Predicted to be located in cytoplasmic vesicle and membrane.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: C20orf92; COMM domain-containing protein 7; dJ1085F17.3; FLJ14987; MGC33315
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382032,702,699 - 32,743,467 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2032,702,699 - 32,743,467 (-)EnsemblGRCh38hg38GRCh38
GRCh372031,290,501 - 31,331,273 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362030,754,154 - 30,795,475 (-)NCBINCBI36Build 36hg18NCBI36
Build 342030,754,164 - 30,795,036NCBI
Celera2028,045,955 - 28,085,739 (-)NCBICelera
Cytogenetic Map20q11.21NCBI
HuRef2028,079,083 - 28,118,793 (-)NCBIHuRef
CHM1_12031,195,366 - 31,235,269 (-)NCBICHM1_1
T2T-CHM13v2.02034,431,363 - 34,470,209 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10393949   PMID:11780052   PMID:12477932   PMID:14702039   PMID:15489334   PMID:15799966   PMID:20379614   PMID:20979692   PMID:21778237   PMID:21873635   PMID:22939629   PMID:23049798  
PMID:23376485   PMID:23563313   PMID:25355947   PMID:26060140   PMID:26186194   PMID:26344197   PMID:26496610   PMID:27129158   PMID:27350032   PMID:28142122   PMID:28298427   PMID:28514442  
PMID:29532873   PMID:30232004   PMID:30833792   PMID:33891561   PMID:33961781   PMID:34917906   PMID:35088190   PMID:35271311   PMID:37057209   PMID:37172566  


Genomics

Comparative Map Data
COMMD7
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382032,702,699 - 32,743,467 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2032,702,699 - 32,743,467 (-)EnsemblGRCh38hg38GRCh38
GRCh372031,290,501 - 31,331,273 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362030,754,154 - 30,795,475 (-)NCBINCBI36Build 36hg18NCBI36
Build 342030,754,164 - 30,795,036NCBI
Celera2028,045,955 - 28,085,739 (-)NCBICelera
Cytogenetic Map20q11.21NCBI
HuRef2028,079,083 - 28,118,793 (-)NCBIHuRef
CHM1_12031,195,366 - 31,235,269 (-)NCBICHM1_1
T2T-CHM13v2.02034,431,363 - 34,470,209 (-)NCBIT2T-CHM13v2.0
Commd7
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392153,458,850 - 153,474,712 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2153,458,853 - 153,474,701 (-)EnsemblGRCm39 Ensembl
GRCm382153,616,930 - 153,632,795 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2153,616,933 - 153,632,781 (-)EnsemblGRCm38mm10GRCm38
MGSCv372153,444,570 - 153,458,467 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362153,310,275 - 153,324,172 (-)NCBIMGSCv36mm8
MGSCv362154,428,011 - 154,442,033 (-)NCBIMGSCv36mm8
Celera2159,461,429 - 159,478,858 (-)NCBICelera
Cytogenetic Map2H1NCBI
cM Map275.73NCBI
Commd7
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83162,559,762 - 162,574,543 (-)NCBIGRCr8
mRatBN7.23142,099,566 - 142,114,348 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3142,099,251 - 142,114,317 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3146,001,750 - 146,016,368 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03154,585,556 - 154,600,182 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03152,325,856 - 152,340,470 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03149,101,242 - 149,115,227 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3149,101,243 - 149,115,209 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03155,480,860 - 155,495,145 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43143,997,788 - 144,012,407 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.13143,903,047 - 143,918,137 (-)NCBI
Celera3140,841,506 - 140,856,102 (-)NCBICelera
Cytogenetic Map3q41NCBI
Commd7
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542228,442,274 - 28,467,057 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542228,454,984 - 28,464,885 (+)NCBIChiLan1.0ChiLan1.0
COMMD7
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22138,393,081 - 38,434,386 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12038,386,179 - 38,427,289 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02028,990,068 - 29,031,630 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
COMMD7
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12422,035,590 - 22,057,799 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2422,035,990 - 22,079,583 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2421,681,685 - 21,725,457 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02422,722,770 - 22,766,625 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2422,722,779 - 22,745,431 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12421,998,876 - 22,042,786 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02422,107,585 - 22,151,493 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02422,538,585 - 22,582,519 (-)NCBIUU_Cfam_GSD_1.0
Commd7
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640171,067,914 - 171,087,117 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648519,499,224 - 19,518,481 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648519,500,170 - 19,518,481 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NOL4L
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1736,300,087 - 36,324,918 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11736,256,243 - 36,325,479 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21741,092,379 - 41,095,895 (+)NCBISscrofa10.2Sscrofa10.2susScr3
COMMD7
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1237,078,210 - 37,112,012 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl237,077,735 - 37,111,556 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605089,790,194 - 89,828,112 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Commd7
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248426,520,873 - 6,545,368 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in COMMD7
16 total Variants

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 20p12.2-q12(chr20:9811433-39316956)x3 copy number gain See cases [RCV000052999] Chr20:9811433..39316956 [GRCh38]
Chr20:9792081..37945599 [GRCh37]
Chr20:9740081..37379013 [NCBI36]
Chr20:20p12.2-q12
pathogenic
GRCh38/hg38 20q11.21(chr20:31254983-33473080)x3 copy number gain See cases [RCV000135358] Chr20:31254983..33473080 [GRCh38]
Chr20:29842786..32060886 [GRCh37]
Chr20:29306447..31524547 [NCBI36]
Chr20:20q11.21
pathogenic
GRCh38/hg38 20p13-q13.33(chr20:99557-64277321)x3 copy number gain See cases [RCV000135859] Chr20:99557..64277321 [GRCh38]
Chr20:80198..62908674 [GRCh37]
Chr20:28198..62379118 [NCBI36]
Chr20:20p13-q13.33
pathogenic
GRCh38/hg38 20q11.21-11.23(chr20:32062768-35906606)x3 copy number gain See cases [RCV000141833] Chr20:32062768..35906606 [GRCh38]
Chr20:30650571..34494528 [GRCh37]
Chr20:30114232..33957942 [NCBI36]
Chr20:20q11.21-11.23
pathogenic
GRCh37/hg19 20p12.1-q11.21(chr20:17705775-31600738)x3 copy number gain See cases [RCV000240436] Chr20:17705775..31600738 [GRCh37]
Chr20:20p12.1-q11.21
pathogenic
GRCh37/hg19 20p11.21-q11.21(chr20:24162775-31820857)x3 copy number gain See cases [RCV000448977] Chr20:24162775..31820857 [GRCh37]
Chr20:20p11.21-q11.21
likely pathogenic
GRCh37/hg19 20p13-q13.33(chr20:61569-62915555)x3 copy number gain See cases [RCV000510832] Chr20:61569..62915555 [GRCh37]
Chr20:20p13-q13.33
pathogenic
GRCh37/hg19 20p13-q13.33(chr20:61569-62915555) copy number gain See cases [RCV000512450] Chr20:61569..62915555 [GRCh37]
Chr20:20p13-q13.33
pathogenic
Single allele duplication not provided [RCV000677978] Chr20:17705775..31600738 [GRCh37]
Chr20:20p12.1-q11.21
pathogenic
GRCh37/hg19 20p13-q13.33(chr20:63244-62961294)x3 copy number gain not provided [RCV000741059] Chr20:63244..62961294 [GRCh37]
Chr20:20p13-q13.33
pathogenic
GRCh37/hg19 20p13-q13.33(chr20:63244-62912463)x3 copy number gain not provided [RCV000741057] Chr20:63244..62912463 [GRCh37]
Chr20:20p13-q13.33
pathogenic
GRCh37/hg19 20p13-q13.33(chr20:63244-62948788)x3 copy number gain not provided [RCV000741058] Chr20:63244..62948788 [GRCh37]
Chr20:20p13-q13.33
pathogenic
GRCh37/hg19 20q11.21(chr20:31282278-31396065)x1 copy number loss not provided [RCV001007090] Chr20:31282278..31396065 [GRCh37]
Chr20:20q11.21
uncertain significance
NM_053041.3(COMMD7):c.472T>G (p.Leu158Val) single nucleotide variant Inborn genetic diseases [RCV003269891] Chr20:32704445 [GRCh38]
Chr20:31292247 [GRCh37]
Chr20:20q11.21
uncertain significance
GRCh37/hg19 20q11.21-11.23(chr20:29833608-35087952)x3 copy number gain not provided [RCV000849735] Chr20:29833608..35087952 [GRCh37]
Chr20:20q11.21-11.23
pathogenic
NM_053041.3(COMMD7):c.196G>T (p.Gly66Cys) single nucleotide variant Inborn genetic diseases [RCV003290941] Chr20:32727938 [GRCh38]
Chr20:31315745 [GRCh37]
Chr20:20q11.21
uncertain significance
NM_053041.3(COMMD7):c.526+3G>A single nucleotide variant not provided [RCV000958026] Chr20:32704020 [GRCh38]
Chr20:31291822 [GRCh37]
Chr20:20q11.21
benign
NC_000020.10:g.(?_30795725)_(31395729_?)dup duplication Centromeric instability of chromosomes 1,9 and 16 and immunodeficiency [RCV001300701] Chr20:30795725..31395729 [GRCh37]
Chr20:20q11.21
uncertain significance
GRCh37/hg19 20p11.21-q11.22(chr20:25442597-33761550) copy number gain not specified [RCV002052709] Chr20:25442597..33761550 [GRCh37]
Chr20:20p11.21-q11.22
pathogenic
GRCh37/hg19 20p11.21-q11.21(chr20:24162775-31820857) copy number gain not specified [RCV002052707] Chr20:24162775..31820857 [GRCh37]
Chr20:20p11.21-q11.21
likely pathogenic
GRCh37/hg19 20p11.23-q11.22(chr20:18665879-33903216)x3 copy number gain not provided [RCV001829151] Chr20:18665879..33903216 [GRCh37]
Chr20:20p11.23-q11.22
likely pathogenic
NC_000020.10:g.(?_31189994)_(34287210_?)del deletion not provided [RCV001956104] Chr20:31189994..34287210 [GRCh37]
Chr20:20q11.21-11.22
pathogenic
NM_053041.3(COMMD7):c.128A>G (p.Glu43Gly) single nucleotide variant Inborn genetic diseases [RCV003300083] Chr20:32728099 [GRCh38]
Chr20:31315906 [GRCh37]
Chr20:20q11.21
uncertain significance
GRCh37/hg19 20q11.21-11.23(chr20:29833535-34815537)x3 copy number gain not provided [RCV002474532] Chr20:29833535..34815537 [GRCh37]
Chr20:20q11.21-11.23
likely pathogenic
GRCh37/hg19 20q11.21-11.23(chr20:29652122-35603726)x3 copy number gain not provided [RCV002475651] Chr20:29652122..35603726 [GRCh37]
Chr20:20q11.21-11.23
likely pathogenic
NM_053041.3(COMMD7):c.500G>T (p.Gly167Val) single nucleotide variant Inborn genetic diseases [RCV003004875] Chr20:32704049 [GRCh38]
Chr20:31291851 [GRCh37]
Chr20:20q11.21
uncertain significance
NM_053041.3(COMMD7):c.281C>T (p.Ala94Val) single nucleotide variant Inborn genetic diseases [RCV002982054] Chr20:32706721 [GRCh38]
Chr20:31294523 [GRCh37]
Chr20:20q11.21
uncertain significance
NM_053041.3(COMMD7):c.511G>A (p.Glu171Lys) single nucleotide variant Inborn genetic diseases [RCV002645021] Chr20:32704038 [GRCh38]
Chr20:31291840 [GRCh37]
Chr20:20q11.21
uncertain significance
NM_053041.3(COMMD7):c.319A>G (p.Thr107Ala) single nucleotide variant Inborn genetic diseases [RCV002835884] Chr20:32706600 [GRCh38]
Chr20:31294402 [GRCh37]
Chr20:20q11.21
uncertain significance
NM_053041.3(COMMD7):c.538C>T (p.Pro180Ser) single nucleotide variant Inborn genetic diseases [RCV002960228] Chr20:32703447 [GRCh38]
Chr20:31291249 [GRCh37]
Chr20:20q11.21
uncertain significance
NM_053041.3(COMMD7):c.121C>G (p.Leu41Val) single nucleotide variant Inborn genetic diseases [RCV002831842] Chr20:32728106 [GRCh38]
Chr20:31315913 [GRCh37]
Chr20:20q11.21
uncertain significance
NM_053041.3(COMMD7):c.503A>G (p.Asn168Ser) single nucleotide variant Inborn genetic diseases [RCV003219341] Chr20:32704046 [GRCh38]
Chr20:31291848 [GRCh37]
Chr20:20q11.21
uncertain significance
NM_053041.3(COMMD7):c.176C>T (p.Thr59Ile) single nucleotide variant Inborn genetic diseases [RCV003181360] Chr20:32727958 [GRCh38]
Chr20:31315765 [GRCh37]
Chr20:20q11.21
uncertain significance
NM_053041.3(COMMD7):c.362C>T (p.Ala121Val) single nucleotide variant Inborn genetic diseases [RCV003383930] Chr20:32704879 [GRCh38]
Chr20:31292681 [GRCh37]
Chr20:20q11.21
uncertain significance
GRCh37/hg19 20q11.21(chr20:29917837-31886619)x3 copy number gain not specified [RCV003986134] Chr20:29917837..31886619 [GRCh37]
Chr20:20q11.21
uncertain significance
NC_000020.10:g.(?_30795725)_(31395729_?)dup duplication Centromeric instability of chromosomes 1,9 and 16 and immunodeficiency [RCV001032627] Chr20:30795725..31395729 [GRCh37]
Chr20:20q11.21
uncertain significance
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1241
Count of miRNA genes:529
Interacting mature miRNAs:574
Transcripts:ENST00000278980, ENST00000446419, ENST00000474815, ENST00000610160
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Markers in Region
RH25024  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh372031,290,613 - 31,290,769UniSTSGRCh37
Build 362030,754,274 - 30,754,430RGDNCBI36
Celera2028,046,075 - 28,046,231RGD
Cytogenetic Map20q11.21UniSTS
HuRef2028,079,203 - 28,079,359UniSTS
D20S1117  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh372031,290,593 - 31,290,736UniSTSGRCh37
Build 362030,754,254 - 30,754,397RGDNCBI36
Celera2028,046,055 - 28,046,198RGD
Cytogenetic Map20q11.21UniSTS
HuRef2028,079,183 - 28,079,326UniSTS
Stanford-G3 RH Map201668.0UniSTS
GeneMap99-GB4 RH Map20191.45UniSTS
NCBI RH Map20286.4UniSTS
GeneMap99-G3 RH Map201701.0UniSTS
WI-20368  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh372031,290,544 - 31,290,833UniSTSGRCh37
Build 362030,754,205 - 30,754,494RGDNCBI36
Celera2028,046,006 - 28,046,295RGD
Cytogenetic Map20q11.21UniSTS
HuRef2028,079,134 - 28,079,423UniSTS
GeneMap99-GB4 RH Map20191.21UniSTS
Whitehead-RH Map20196.6UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system visual system adipose tissue appendage entire extraembryonic component pharyngeal arch
High
Medium 2428 2770 1713 612 1798 454 4352 2128 3621 417 1441 1608 171 1204 2785 4
Low 11 220 13 12 153 11 5 69 113 2 19 4 4 1 3 2 2
Below cutoff 6 43 22 11 15 1

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001099339 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_053041 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005260299 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005260300 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011528604 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017027685 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017027686 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017027687 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047439932 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054323080 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054323081 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054323082 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054323083 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054323084 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054323085 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AJ012490 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK027893 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK096307 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK097059 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL035071 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY542162 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC000628 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC022073 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC047440 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BG715846 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BQ006261 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BX640505 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471077 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CP068258 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DN993528 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ976907 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENST00000278980   ⟹   ENSP00000278980
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2032,702,699 - 32,743,467 (-)Ensembl
RefSeq Acc Id: ENST00000446419   ⟹   ENSP00000395339
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2032,702,703 - 32,743,455 (-)Ensembl
RefSeq Acc Id: ENST00000474815   ⟹   ENSP00000476443
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2032,704,474 - 32,743,406 (-)Ensembl
RefSeq Acc Id: ENST00000610160   ⟹   ENSP00000476617
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2032,702,703 - 32,743,445 (-)Ensembl
RefSeq Acc Id: ENST00000642484   ⟹   ENSP00000496538
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2032,632,183 - 32,743,523 (-)Ensembl
RefSeq Acc Id: ENST00000642630   ⟹   ENSP00000494986
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2032,632,183 - 32,743,523 (-)Ensembl
RefSeq Acc Id: ENST00000645058   ⟹   ENSP00000494955
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2032,632,183 - 32,743,567 (-)Ensembl
RefSeq Acc Id: ENST00000646357   ⟹   ENSP00000493768
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2032,632,183 - 32,743,523 (-)Ensembl
RefSeq Acc Id: NM_001099339   ⟹   NP_001092809
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh382032,702,699 - 32,743,467 (-)NCBI
GRCh372031,290,493 - 31,331,814 (-)RGD
Build 362030,754,154 - 30,795,475 (-)NCBI Archive
Celera2028,045,955 - 28,085,739 (-)RGD
HuRef2028,079,083 - 28,118,793 (-)ENTREZGENE
CHM1_12031,195,366 - 31,235,269 (-)NCBI
T2T-CHM13v2.02034,431,363 - 34,470,209 (-)NCBI
Sequence:
RefSeq Acc Id: NM_053041   ⟹   NP_444269
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh382032,702,699 - 32,743,467 (-)NCBI
GRCh372031,290,493 - 31,331,814 (-)RGD
Build 362030,754,154 - 30,795,475 (-)NCBI Archive
Celera2028,045,955 - 28,085,739 (-)RGD
HuRef2028,079,083 - 28,118,793 (-)ENTREZGENE
CHM1_12031,195,366 - 31,235,269 (-)NCBI
T2T-CHM13v2.02034,431,363 - 34,470,209 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005260299   ⟹   XP_005260356
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh382032,703,465 - 32,743,467 (-)NCBI
GRCh372031,290,493 - 31,331,814 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005260300   ⟹   XP_005260357
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh382032,703,465 - 32,743,467 (-)NCBI
GRCh372031,290,493 - 31,331,814 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011528604   ⟹   XP_011526906
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh382032,702,699 - 32,743,467 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017027685   ⟹   XP_016883174
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh382032,702,699 - 32,743,467 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017027686   ⟹   XP_016883175
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh382032,702,699 - 32,743,467 (-)NCBI
Sequence:
RefSeq Acc Id: XM_047439932   ⟹   XP_047295888
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh382032,702,699 - 32,743,467 (-)NCBI
RefSeq Acc Id: XM_054323080   ⟹   XP_054179055
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.02034,432,129 - 34,470,209 (-)NCBI
RefSeq Acc Id: XM_054323081   ⟹   XP_054179056
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.02034,432,129 - 34,470,209 (-)NCBI
RefSeq Acc Id: XM_054323082   ⟹   XP_054179057
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.02034,431,363 - 34,470,209 (-)NCBI
RefSeq Acc Id: XM_054323083   ⟹   XP_054179058
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.02034,431,363 - 34,470,209 (-)NCBI
RefSeq Acc Id: XM_054323084   ⟹   XP_054179059
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.02034,431,363 - 34,470,209 (-)NCBI
RefSeq Acc Id: XM_054323085   ⟹   XP_054179060
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.02034,431,363 - 34,470,209 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001092809 (Get FASTA)   NCBI Sequence Viewer  
  NP_444269 (Get FASTA)   NCBI Sequence Viewer  
  XP_005260356 (Get FASTA)   NCBI Sequence Viewer  
  XP_005260357 (Get FASTA)   NCBI Sequence Viewer  
  XP_011526906 (Get FASTA)   NCBI Sequence Viewer  
  XP_016883174 (Get FASTA)   NCBI Sequence Viewer  
  XP_016883175 (Get FASTA)   NCBI Sequence Viewer  
  XP_047295888 (Get FASTA)   NCBI Sequence Viewer  
  XP_054179055 (Get FASTA)   NCBI Sequence Viewer  
  XP_054179056 (Get FASTA)   NCBI Sequence Viewer  
  XP_054179057 (Get FASTA)   NCBI Sequence Viewer  
  XP_054179058 (Get FASTA)   NCBI Sequence Viewer  
  XP_054179059 (Get FASTA)   NCBI Sequence Viewer  
  XP_054179060 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH00628 (Get FASTA)   NCBI Sequence Viewer  
  AAH47440 (Get FASTA)   NCBI Sequence Viewer  
  AAS22244 (Get FASTA)   NCBI Sequence Viewer  
  BAB55436 (Get FASTA)   NCBI Sequence Viewer  
  BAG53254 (Get FASTA)   NCBI Sequence Viewer  
  EAW76357 (Get FASTA)   NCBI Sequence Viewer  
  EAW76358 (Get FASTA)   NCBI Sequence Viewer  
  EAW76359 (Get FASTA)   NCBI Sequence Viewer  
  EAW76360 (Get FASTA)   NCBI Sequence Viewer  
  EAW76361 (Get FASTA)   NCBI Sequence Viewer  
  EAW76362 (Get FASTA)   NCBI Sequence Viewer  
  EAW76363 (Get FASTA)   NCBI Sequence Viewer  
  EAW76364 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSP00000278980
  ENSP00000278980.6
  ENSP00000395339
  ENSP00000395339.1
  ENSP00000476443.1
  ENSP00000476617.1
  ENSP00000493768.1
  ENSP00000494955.1
  ENSP00000494986.1
  ENSP00000496538.1
GenBank Protein Q86VX2 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_444269   ⟸   NM_053041
- Peptide Label: isoform 1
- UniProtKB: Q96SI7 (UniProtKB/Swiss-Prot),   Q5JYB0 (UniProtKB/Swiss-Prot),   B3KTZ2 (UniProtKB/Swiss-Prot),   A2BHJ2 (UniProtKB/Swiss-Prot),   Q9BW53 (UniProtKB/Swiss-Prot),   Q86VX2 (UniProtKB/Swiss-Prot),   A0A2R8Y620 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001092809   ⟸   NM_001099339
- Peptide Label: isoform 2
- UniProtKB: A0A2R8Y620 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005260357   ⟸   XM_005260300
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_005260356   ⟸   XM_005260299
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_011526906   ⟸   XM_011528604
- Peptide Label: isoform X3
- UniProtKB: A0A2R8Y620 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_016883174   ⟸   XM_017027685
- Peptide Label: isoform X4
- UniProtKB: A0A2R8Y620 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_016883175   ⟸   XM_017027686
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: ENSP00000476617   ⟸   ENST00000610160
RefSeq Acc Id: ENSP00000496538   ⟸   ENST00000642484
RefSeq Acc Id: ENSP00000494986   ⟸   ENST00000642630
RefSeq Acc Id: ENSP00000395339   ⟸   ENST00000446419
RefSeq Acc Id: ENSP00000494955   ⟸   ENST00000645058
RefSeq Acc Id: ENSP00000278980   ⟸   ENST00000278980
RefSeq Acc Id: ENSP00000476443   ⟸   ENST00000474815
RefSeq Acc Id: ENSP00000493768   ⟸   ENST00000646357
RefSeq Acc Id: XP_047295888   ⟸   XM_047439932
- Peptide Label: isoform X6
RefSeq Acc Id: XP_054179060   ⟸   XM_054323085
- Peptide Label: isoform X6
RefSeq Acc Id: XP_054179058   ⟸   XM_054323083
- Peptide Label: isoform X4
RefSeq Acc Id: XP_054179059   ⟸   XM_054323084
- Peptide Label: isoform X5
RefSeq Acc Id: XP_054179057   ⟸   XM_054323082
- Peptide Label: isoform X3
RefSeq Acc Id: XP_054179056   ⟸   XM_054323081
- Peptide Label: isoform X2
RefSeq Acc Id: XP_054179055   ⟸   XM_054323080
- Peptide Label: isoform X1
Protein Domains
COMM

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q86VX2-F1-model_v2 AlphaFold Q86VX2 1-200 view protein structure

Promoters
RGD ID:6798607
Promoter ID:HG_KWN:39041
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   CD4+TCell_12Hour,   CD4+TCell_2Hour,   HeLa_S3,   K562,   Lymphoblastoid,   NB4
Transcripts:NM_001099339,   NM_053041,   UC002WYB.2
Position:
Human AssemblyChrPosition (strand)Source
Build 362030,794,871 - 30,795,392 (-)MPROMDB
RGD ID:13206663
Promoter ID:EPDNEW_H26912
Type:initiation region
Name:COMMD7_3
Description:COMM domain containing 7
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H26914  EPDNEW_H26913  
Experiment Methods:Single-end sequencing.; Paired-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh382032,706,727 - 32,706,787EPDNEW
RGD ID:13206667
Promoter ID:EPDNEW_H26913
Type:initiation region
Name:COMMD7_1
Description:COMM domain containing 7
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H26912  EPDNEW_H26914  
Experiment Methods:Single-end sequencing.; Paired-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh382032,743,455 - 32,743,515EPDNEW
RGD ID:13206665
Promoter ID:EPDNEW_H26914
Type:initiation region
Name:COMMD7_2
Description:COMM domain containing 7
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H26912  EPDNEW_H26913  
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh382032,743,947 - 32,744,007EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:16223 AgrOrtholog
COSMIC COMMD7 COSMIC
Ensembl Genes ENSG00000149600 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSG00000285382 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENST00000278980 ENTREZGENE
  ENST00000278980.11 UniProtKB/Swiss-Prot
  ENST00000446419 ENTREZGENE
  ENST00000446419.6 UniProtKB/Swiss-Prot
  ENST00000474815.2 UniProtKB/TrEMBL
  ENST00000610160.1 UniProtKB/TrEMBL
  ENST00000642484.1 UniProtKB/TrEMBL
  ENST00000642630.1 UniProtKB/TrEMBL
  ENST00000645058.1 UniProtKB/TrEMBL
  ENST00000646357.1 UniProtKB/TrEMBL
GTEx ENSG00000149600 GTEx
  ENSG00000285382 GTEx
HGNC ID HGNC:16223 ENTREZGENE
Human Proteome Map COMMD7 Human Proteome Map
InterPro COMM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  COMMD4/6/7/8 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  COMMD7 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report hsa:149951 UniProtKB/Swiss-Prot
NCBI Gene 149951 ENTREZGENE
OMIM 616703 OMIM
PANTHER COMM DOMAIN-CONTAINING PROTEIN 4-8 FAMILY MEMBER UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  COMM DOMAIN-CONTAINING PROTEIN 7 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam COMM_domain UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  COMM_HN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PharmGKB PA25799 PharmGKB
PROSITE COMM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A2R8Y455_HUMAN UniProtKB/TrEMBL
  A0A2R8Y600_HUMAN UniProtKB/TrEMBL
  A0A2R8Y620 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R8Y7U2_HUMAN UniProtKB/TrEMBL
  A2BHJ2 ENTREZGENE
  B3KTZ2 ENTREZGENE
  COMD7_HUMAN UniProtKB/Swiss-Prot
  Q5JYB0 ENTREZGENE
  Q86VX2 ENTREZGENE
  Q96SI7 ENTREZGENE
  Q9BW53 ENTREZGENE
  V9GY66_HUMAN UniProtKB/TrEMBL
  V9GYC5_HUMAN UniProtKB/TrEMBL
UniProt Secondary A2BHJ2 UniProtKB/Swiss-Prot
  B3KTZ2 UniProtKB/Swiss-Prot
  Q5JYB0 UniProtKB/Swiss-Prot
  Q96SI7 UniProtKB/Swiss-Prot
  Q9BW53 UniProtKB/Swiss-Prot