Rbms1 (RNA binding motif, single stranded interacting protein 1) - Rat Genome Database

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Gene: Rbms1 (RNA binding motif, single stranded interacting protein 1) Mus musculus
Analyze
Symbol: Rbms1
Name: RNA binding motif, single stranded interacting protein 1
RGD ID: 1317166
MGI Page MGI
Description: Predicted to enable mRNA 3'-UTR binding activity; poly(A) binding activity; and poly(U) RNA binding activity. Predicted to act upstream of or within DNA replication. Predicted to be part of ribonucleoprotein complex. Predicted to be active in cytosol and nucleus. Is expressed in several structures, including alimentary system; central nervous system; genitourinary system; hemolymphoid system; and sensory organ. Orthologous to human RBMS1 (RNA binding motif single stranded interacting protein 1).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 2600014B10Rik; AI255215; MSS; MSSP-1; MSSP-2; MSSP-3; RNA-binding motif, single-stranded-interacting protein 1; single-stranded DNA-binding protein MSSP-1; YC1
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39260,580,537 - 60,794,224 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl260,580,537 - 60,793,536 (-)EnsemblGRCm39 Ensembl
GRCm38260,750,193 - 60,963,880 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl260,750,193 - 60,963,192 (-)EnsemblGRCm38mm10GRCm38
MGSCv37260,590,010 - 60,801,261 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36260,553,561 - 60,763,759 (-)NCBIMGSCv36mm8
Celera262,449,205 - 62,660,675 (-)NCBICelera
Cytogenetic Map2C1.2NCBI
cM Map234.95NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-epigallocatechin 3-gallate  (ISO)
(1->4)-beta-D-glucan  (EXP)
1,2-dichloroethane  (EXP)
17beta-estradiol  (ISO)
2,2',4,4',5,5'-hexachlorobiphenyl  (EXP)
2,2',5,5'-tetrachlorobiphenyl  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
3,3',4,4',5-pentachlorobiphenyl  (ISO)
4,4'-sulfonyldiphenol  (EXP,ISO)
acetamide  (ISO)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
antirheumatic drug  (ISO)
aristolochic acid A  (ISO)
Aroclor 1254  (EXP)
arsane  (ISO)
arsenic atom  (ISO)
benzene  (ISO)
benzo[a]pyrene  (EXP,ISO)
benzo[a]pyrene diol epoxide I  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (EXP,ISO)
caffeine  (ISO)
carbon nanotube  (ISO)
CGP 52608  (ISO)
chlordecone  (EXP)
choline  (EXP)
ciglitazone  (ISO)
ciguatoxin CTX1B  (EXP)
clothianidin  (ISO)
cobalt dichloride  (ISO)
coumestrol  (ISO)
cyclosporin A  (ISO)
dibutyl phthalate  (EXP)
diethylstilbestrol  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
elemental selenium  (ISO)
Enterolactone  (ISO)
entinostat  (ISO)
fenthion  (EXP)
flutamide  (ISO)
folic acid  (EXP)
genistein  (ISO)
hydrogen peroxide  (ISO)
inulin  (EXP)
irinotecan  (ISO)
isobutanol  (ISO)
ketamine  (ISO)
L-methionine  (EXP)
lead(0)  (ISO)
menadione  (ISO)
methapyrilene  (ISO)
methotrexate  (ISO)
oxaliplatin  (ISO)
paracetamol  (EXP,ISO)
PCB138  (EXP)
perfluorooctane-1-sulfonic acid  (EXP)
phenobarbital  (EXP)
potassium chromate  (ISO)
propiconazole  (EXP)
quercetin  (ISO)
resveratrol  (ISO)
rimonabant  (EXP)
SB 431542  (ISO)
selenium atom  (ISO)
serpentine asbestos  (ISO)
silver atom  (EXP)
silver(0)  (EXP)
sodium arsenite  (ISO)
Soman  (ISO)
tetrachloromethane  (EXP,ISO)
topotecan  (ISO)
troglitazone  (EXP)
tungsten  (EXP)
valproic acid  (ISO)
vitamin E  (ISO)
zinc atom  (ISO)
zinc(0)  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2. MGDs mouse GO annotations MGD data from the GO Consortium
3. MGD IEA MGD IEA
4. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
5. Mouse MP Annotation Import Pipeline RGD automated import pipeline
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10639566   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11737267   PMID:12477932   PMID:12520002   PMID:12904583   PMID:14610273   PMID:15489334  
PMID:15782199   PMID:15817157   PMID:16033648   PMID:16141072   PMID:16141073   PMID:16602821   PMID:17967808   PMID:18799693   PMID:20860848   PMID:21677750   PMID:21873635   PMID:22593182  
PMID:24194600   PMID:27626380   PMID:32098917   PMID:32325033   PMID:35476669   PMID:35754370   PMID:37511060   PMID:38288506  


Genomics

Comparative Map Data
Rbms1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39260,580,537 - 60,794,224 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl260,580,537 - 60,793,536 (-)EnsemblGRCm39 Ensembl
GRCm38260,750,193 - 60,963,880 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl260,750,193 - 60,963,192 (-)EnsemblGRCm38mm10GRCm38
MGSCv37260,590,010 - 60,801,261 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36260,553,561 - 60,763,759 (-)NCBIMGSCv36mm8
Celera262,449,205 - 62,660,675 (-)NCBICelera
Cytogenetic Map2C1.2NCBI
cM Map234.95NCBI
RBMS1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382160,272,151 - 160,493,807 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2160,272,151 - 160,493,807 (-)EnsemblGRCh38hg38GRCh38
GRCh372161,128,662 - 161,350,318 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362160,838,758 - 161,058,551 (-)NCBINCBI36Build 36hg18NCBI36
Build 342160,956,021 - 161,175,812NCBI
Celera2154,740,148 - 154,834,898 (-)NCBICelera
Cytogenetic Map2q24.2NCBI
HuRef2153,011,878 - 153,233,434 (-)NCBIHuRef
CHM1_12161,134,996 - 161,230,229 (-)NCBICHM1_1
T2T-CHM13v2.02160,729,618 - 160,951,341 (-)NCBIT2T-CHM13v2.0
Rbms1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8365,604,475 - 65,829,072 (-)NCBIGRCr8
mRatBN7.2345,195,828 - 45,420,406 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl345,197,972 - 45,420,376 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx348,554,606 - 48,776,212 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0357,138,175 - 57,359,771 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0354,908,213 - 55,130,173 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0346,802,870 - 47,025,178 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl346,803,355 - 47,025,128 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0351,910,791 - 52,132,833 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4342,438,537 - 42,663,729 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1342,334,916 - 42,560,101 (-)NCBI
Celera344,893,977 - 45,114,533 (-)NCBICelera
Cytogenetic Map3q21NCBI
Rbms1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544913,164,401 - 13,370,494 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495544913,164,306 - 13,368,011 (+)NCBIChiLan1.0ChiLan1.0
RBMS1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21362,966,726 - 63,186,931 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B62,981,697 - 63,200,950 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B47,568,438 - 47,787,601 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B164,939,363 - 165,158,106 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B164,939,363 - 165,038,851 (-)Ensemblpanpan1.1panPan2
RBMS1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1365,978,146 - 6,118,409 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl365,980,665 - 6,192,286 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha366,116,486 - 6,330,625 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0366,102,152 - 6,316,323 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl366,104,490 - 6,316,744 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1366,119,175 - 6,333,075 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0366,162,584 - 6,376,460 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0366,271,685 - 6,485,660 (-)NCBIUU_Cfam_GSD_1.0
Rbms1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303123,112,008 - 123,316,749 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493646918,300,760 - 18,505,729 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493646918,300,984 - 18,505,712 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RBMS1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1567,194,072 - 67,409,413 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11567,192,880 - 67,409,427 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21574,418,814 - 74,617,798 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RBMS1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11045,668,578 - 45,887,590 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1045,672,007 - 45,887,163 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666040153,687,022 - 153,904,075 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rbms1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247325,104,081 - 5,319,372 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247325,104,411 - 5,319,372 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Rbms1
6543 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1689
Count of miRNA genes:651
Interacting mature miRNAs:834
Transcripts:ENSMUST00000028347, ENSMUST00000112509, ENSMUST00000123046, ENSMUST00000125485, ENSMUST00000128866, ENSMUST00000132529, ENSMUST00000151846, ENSMUST00000153555, ENSMUST00000164147
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301769Orgwq2_morgan weight QTL 2 (mouse)Not determined2388712693421651Mouse
8552707Cia23_mcollagen induced arthritis QTL 23 (mouse)Not determined21212953766556453Mouse
1357881Estoq1_membryo survival total QTL 1 (mouse)Not determined220897778118894840Mouse
1357454Kidq1_mkidney weight QTL 1 (mouse)Not determined220897778118894840Mouse
1357436Splq1_mspleen weight QTL 1 (mouse)Not determined220897778118894840Mouse
39128209Lwq14_mliver weight QTL 14 (mouse)220897778118894840Mouse
1558899Egq1_mearly growth QTL 1 (mouse)Not determined220897778118894840Mouse
1558966W10q9_mweight 10 weeks QTL 9 (mouse)Not determined220897778118894840Mouse
1558915W3q1_mweight 3 weeks QTL 1 (mouse)Not determined220897778118894840Mouse
1558738W6q1_mweight 6 weeks QTL 1 (mouse)Not determined220897778118894840Mouse
1357681Hrtq1_mheart weight QTL 1 (mouse)Not determined220897778118894840Mouse
1302174Dssc2_mdextran sodium sulfate induced colitis QTL2 (mouse)Not determined224224632148700377Mouse
1300577Capsq1_mcapsaicin sensitivity related QTL 1 (mouse)Not determined22760206084013384Mouse
14746979Manh51_mmandible shape 51 (mouse)22896112962961129Mouse
14746997Mancz2_mmandible centroid size 2 (mouse)22896112962961129Mouse
4141854T2dm2sa_mtype 2 diabetes mellitus 2 in SMXA RI mice (mouse)Not determined229307947148374934Mouse
4141236Hbnr5_mHeligmosomoides bakeri nematode resistance 5 (mouse)Not determined31214567105143570Mouse
4142447Pbwg1.7_mpostnatal body weight growth 1.7 (mouse)Not determined3579732469797406Mouse
4141186Pbwg1.8_mpostnatal body weight growth 1.8 (mouse)Not determined3579732469797406Mouse
4142133Pbwg1.6_mpostnatal body weight growth 1.6 (mouse)Not determined3579732469797406Mouse
1559001Eae33_mexperimental allergic encephalomyelitis susceptibility 33 (mouse)Not determined23599167971609412Mouse
10449151Hdl8_mhigh density lipoprotein (HDL) level 8 (mouse)23812972567072607Mouse
10449150Pvldlc1_mplasma VLDL-cholesterol 1 (mouse)23812972567072607Mouse
10449145Lanq1_mlanosterol level QTL 1 (mouse)23812972567072607Mouse
11038703Ltpr1_mLeishmania tropica response 1 (mouse)23997166573971811Mouse
1301109Dntcs2_mdental caries susceptibility 2 (mouse)Not determined240885493114910165Mouse
1301480Pbwg1_mpostnatal body weight growth 1 (mouse)Not determined24182071975820843Mouse
4141069Pbwg1.5_mpostnatal body weight growth 1.5 (mouse)Not determined4352061277520756Mouse
1300788Cia2_mcollagen induced arthritis QTL 2 (mouse)Not determined24352061277520756Mouse
1300671Cia4_mcollagen induced arthritis QTL 4 (mouse)Not determined24352061277520756Mouse
1301402Ap2q_malcohol preference 2 QTL (mouse)Not determined24352061277520756Mouse
1301411Pitm1_mprion incubation time 1 (mouse)Not determined24352061277520756Mouse
10755532Lymph5_mlymphocyte differential 5 (mouse)24419901778199017Mouse
1300645Alcp1_malcohol preference locus 1 (mouse)Not determined24522812867838868Mouse
1301344Lith1_mlithogenic gene 1 (mouse)Not determined245347635145312647Mouse
11532740Pbwg1.10_mpostnatal body weight growth 1.10 (mouse)24813241282132495Mouse
1558820Moo1_mmodifier of Odc1 (mouse)Not determined174826974682269934Mouse
1301747Eae21_mexperimental allergic encephalomyelitis 21 (mouse)Not determined24826974682269934Mouse
1301235Alcw4_malcohol withdrawal 4 (mouse)Not determined24826974682269934Mouse
1300568Hdl1_mhigh density lipoprotein (HDL) level 1 (mouse)Not determined24826974682269934Mouse
10755526Lymph1_mlymphocyte differential 1 (mouse)25081931484819314Mouse
1300875Taste1_mtaste-saccharin preference 1 (mouse)Not determined25092317584923278Mouse
1300761Lgth1_mbody length 1 (mouse)Not determined25170327685703425Mouse
13464141Hbbcq3_mhemoglobin concentration QTL 3 (mouse)25244801986448136Mouse
13463471Hctq6_mhematocrit QTL 6 (mouse)25244801986448136Mouse
4142185Pbwg1.3_mpostnatal body weight growth 1.3 (mouse)Not determined5718712365132495Mouse
4141406Alpq2_malcohol preference QTL 2 (mouse)Not determined25752411791524288Mouse
12738429Lfibq18_mliver fibrosis QTL 18 (mouse)25791999191919991Mouse
13432185Acdes1_mactivity chamber difference ethanol/saline 1 (mouse)25939228762892287Mouse
13432184Actdes1_mactivity chamber total difference ethanol/saline 1 (mouse)25939228769292287Mouse
13432174Actres5_mactivity response to ethanol/saline 5 (mouse)25989228769792287Mouse
1357577Trmq3_mT cell ratio modifier QTL 3 (mouse)Not determined260520612119355518Mouse
13432178Actres2_mactivity response to ethanol/saline 2 (mouse)26069228774092287Mouse
13432175Actres4_mactivity response to ethanol/saline 4 (mouse)26079228762892287Mouse
13432177Actres3_mactivity response to ethanol/saline 3 (mouse)26079228763092287Mouse
13432180Acq2_mactivity chamber QTL 2 (mouse)26079228764592287Mouse

Markers in Region
RH135918  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38260,759,103 - 60,759,302UniSTSGRCm38
MGSCv37260,597,160 - 60,597,359UniSTSGRCm37
Celera262,456,355 - 62,456,554UniSTS
Cytogenetic Map2C3UniSTS
RH136033  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38260,752,436 - 60,752,635UniSTSGRCm38
MGSCv37260,590,493 - 60,590,692UniSTSGRCm37
Celera262,449,688 - 62,449,887UniSTS
Cytogenetic Map2C3UniSTS
Rbms1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map2C3UniSTS
cM Map2 UniSTS
RH80872  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38260,752,792 - 60,752,948UniSTSGRCm38
MGSCv37260,590,849 - 60,591,005UniSTSGRCm37
Celera262,450,044 - 62,450,200UniSTS
Cytogenetic Map2C3UniSTS
RH80864  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38260,752,792 - 60,752,961UniSTSGRCm38
MGSCv37260,590,849 - 60,591,018UniSTSGRCm37
Celera262,450,044 - 62,450,213UniSTS
Cytogenetic Map2C3UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001141931 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001141932 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_020296 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006499940 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006499942 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017319146 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030251907 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030251908 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030251909 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030251910 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036162420 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AA175245 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB026569 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB026582 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK011205 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK133054 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK135280 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK143579 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK145897 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK147109 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK149041 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK159851 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK161102 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK161416 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK164307 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK169352 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK178547 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK180025 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK184927 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK188295 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK201259 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK203574 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK210454 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK218973 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL928581 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL929012 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC016501 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC056609 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC057866 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466519 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSMUST00000028347   ⟹   ENSMUSP00000028347
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl260,580,537 - 60,793,536 (-)Ensembl
GRCm38.p6 Ensembl260,750,193 - 60,963,192 (-)Ensembl
RefSeq Acc Id: ENSMUST00000112509   ⟹   ENSMUSP00000108128
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl260,583,066 - 60,711,814 (-)Ensembl
GRCm38.p6 Ensembl260,752,722 - 60,881,470 (-)Ensembl
RefSeq Acc Id: ENSMUST00000123046
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl260,583,904 - 60,592,665 (-)Ensembl
GRCm38.p6 Ensembl260,753,560 - 60,762,321 (-)Ensembl
RefSeq Acc Id: ENSMUST00000125485
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl260,718,556 - 60,718,852 (-)Ensembl
GRCm38.p6 Ensembl260,888,212 - 60,888,508 (-)Ensembl
RefSeq Acc Id: ENSMUST00000128866
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl260,718,768 - 60,719,340 (-)Ensembl
GRCm38.p6 Ensembl260,888,424 - 60,888,996 (-)Ensembl
RefSeq Acc Id: ENSMUST00000132529
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl260,672,641 - 60,719,374 (-)Ensembl
GRCm38.p6 Ensembl260,842,297 - 60,889,030 (-)Ensembl
RefSeq Acc Id: ENSMUST00000151846
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl260,672,641 - 60,718,399 (-)Ensembl
GRCm38.p6 Ensembl260,842,297 - 60,888,055 (-)Ensembl
RefSeq Acc Id: ENSMUST00000153555
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl260,585,760 - 60,611,285 (-)Ensembl
GRCm38.p6 Ensembl260,755,416 - 60,780,941 (-)Ensembl
RefSeq Acc Id: ENSMUST00000164147   ⟹   ENSMUSP00000131306
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl260,582,297 - 60,711,782 (-)Ensembl
GRCm38.p6 Ensembl260,751,953 - 60,881,438 (-)Ensembl
RefSeq Acc Id: NM_001141931   ⟹   NP_001135403
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39260,582,297 - 60,711,782 (-)NCBI
GRCm38260,751,953 - 60,881,438 (-)NCBI
MGSCv37260,590,010 - 60,801,261 (-)RGD
Celera262,449,205 - 62,660,675 (-)RGD
cM Map2 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001141932   ⟹   NP_001135404
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39260,582,297 - 60,711,782 (-)NCBI
GRCm38260,751,953 - 60,881,438 (-)NCBI
MGSCv37260,590,010 - 60,801,261 (-)RGD
Celera262,449,205 - 62,660,675 (-)RGD
cM Map2 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_020296   ⟹   NP_064692
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39260,582,297 - 60,793,548 (-)NCBI
GRCm38260,751,953 - 60,963,204 (-)NCBI
MGSCv37260,590,010 - 60,801,261 (-)RGD
Celera262,449,205 - 62,660,675 (-)RGD
cM Map2 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006499940   ⟹   XP_006500003
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39260,580,537 - 60,794,224 (-)NCBI
GRCm38260,750,193 - 60,963,880 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006499942   ⟹   XP_006500005
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39260,580,537 - 60,793,794 (-)NCBI
GRCm38260,750,193 - 60,963,450 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017319146   ⟹   XP_017174635
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39260,580,537 - 60,793,794 (-)NCBI
GRCm38260,750,193 - 60,963,450 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030251907   ⟹   XP_030107767
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39260,580,537 - 60,711,883 (-)NCBI
GRCm38260,750,193 - 60,881,503 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030251908   ⟹   XP_030107768
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39260,580,537 - 60,793,794 (-)NCBI
GRCm38260,750,193 - 60,963,450 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030251909   ⟹   XP_030107769
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39260,580,537 - 60,711,883 (-)NCBI
GRCm38260,750,193 - 60,881,503 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030251910   ⟹   XP_030107770
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39260,580,537 - 60,793,794 (-)NCBI
GRCm38260,750,193 - 60,963,450 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036162420   ⟹   XP_036018313
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39260,580,537 - 60,678,557 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001135403 (Get FASTA)   NCBI Sequence Viewer  
  NP_001135404 (Get FASTA)   NCBI Sequence Viewer  
  NP_064692 (Get FASTA)   NCBI Sequence Viewer  
  XP_006500003 (Get FASTA)   NCBI Sequence Viewer  
  XP_006500005 (Get FASTA)   NCBI Sequence Viewer  
  XP_017174635 (Get FASTA)   NCBI Sequence Viewer  
  XP_030107767 (Get FASTA)   NCBI Sequence Viewer  
  XP_030107768 (Get FASTA)   NCBI Sequence Viewer  
  XP_030107769 (Get FASTA)   NCBI Sequence Viewer  
  XP_030107770 (Get FASTA)   NCBI Sequence Viewer  
  XP_036018313 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH16501 (Get FASTA)   NCBI Sequence Viewer  
  AAH56609 (Get FASTA)   NCBI Sequence Viewer  
  AAH57866 (Get FASTA)   NCBI Sequence Viewer  
  BAA77262 (Get FASTA)   NCBI Sequence Viewer  
  BAA77264 (Get FASTA)   NCBI Sequence Viewer  
  BAE21490 (Get FASTA)   NCBI Sequence Viewer  
  BAE22471 (Get FASTA)   NCBI Sequence Viewer  
  BAE26733 (Get FASTA)   NCBI Sequence Viewer  
  BAE27681 (Get FASTA)   NCBI Sequence Viewer  
  BAE35428 (Get FASTA)   NCBI Sequence Viewer  
  BAE36195 (Get FASTA)   NCBI Sequence Viewer  
  BAE36384 (Get FASTA)   NCBI Sequence Viewer  
  BAE37728 (Get FASTA)   NCBI Sequence Viewer  
  EDL26968 (Get FASTA)   NCBI Sequence Viewer  
  EDL26969 (Get FASTA)   NCBI Sequence Viewer  
  EDL26970 (Get FASTA)   NCBI Sequence Viewer  
  EDL26971 (Get FASTA)   NCBI Sequence Viewer  
  EDL26972 (Get FASTA)   NCBI Sequence Viewer  
  EDL26973 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000028347
  ENSMUSP00000028347.7
  ENSMUSP00000108128.2
  ENSMUSP00000131306
  ENSMUSP00000131306.2
GenBank Protein Q91W59 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_064692   ⟸   NM_020296
- Peptide Label: isoform 3
- UniProtKB: Q6PHC2 (UniProtKB/Swiss-Prot),   Q6PEU6 (UniProtKB/Swiss-Prot),   Q3UXU2 (UniProtKB/Swiss-Prot),   Q3UI25 (UniProtKB/Swiss-Prot),   Q9WTK4 (UniProtKB/Swiss-Prot),   Q91W59 (UniProtKB/Swiss-Prot),   Q3UKR8 (UniProtKB/TrEMBL),   Q3V0L4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001135403   ⟸   NM_001141931
- Peptide Label: isoform 2
- UniProtKB: Q3UKR8 (UniProtKB/TrEMBL),   Q3V0L4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001135404   ⟸   NM_001141932
- Peptide Label: isoform 1
- UniProtKB: E9PZ21 (UniProtKB/TrEMBL),   Q3TTX8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006500003   ⟸   XM_006499940
- Peptide Label: isoform X1
- UniProtKB: Q3TTX8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006500005   ⟸   XM_006499942
- Peptide Label: isoform X5
- UniProtKB: Q3TTX8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017174635   ⟸   XM_017319146
- Peptide Label: isoform X3
- UniProtKB: Q3TTX8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_030107768   ⟸   XM_030251908
- Peptide Label: isoform X6
- UniProtKB: Q3UKR8 (UniProtKB/TrEMBL),   Q3V0L4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_030107770   ⟸   XM_030251910
- Peptide Label: isoform X8
- UniProtKB: Q3UKR8 (UniProtKB/TrEMBL),   Q3V0L4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_030107769   ⟸   XM_030251909
- Peptide Label: isoform X7
- UniProtKB: Q3UKR8 (UniProtKB/TrEMBL),   Q3V0L4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_030107767   ⟸   XM_030251907
- Peptide Label: isoform X4
- UniProtKB: Q3TTX8 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSMUSP00000131306   ⟸   ENSMUST00000164147
RefSeq Acc Id: ENSMUSP00000108128   ⟸   ENSMUST00000112509
RefSeq Acc Id: ENSMUSP00000028347   ⟸   ENSMUST00000028347
RefSeq Acc Id: XP_036018313   ⟸   XM_036162420
- Peptide Label: isoform X2
- UniProtKB: Q3TTX8 (UniProtKB/TrEMBL)
Protein Domains
RRM

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q91W59-F1-model_v2 AlphaFold Q91W59 1-403 view protein structure

Promoters
RGD ID:6830725
Promoter ID:MM_KWN:29374
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:MEF_B6
Transcripts:UC008JUP.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36260,589,286 - 60,589,786 (-)MPROMDB
RGD ID:6832292
Promoter ID:MM_KWN:29375
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Kidney,   MEF_B6
Transcripts:OTTMUST00000030810
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36260,600,386 - 60,601,357 (-)MPROMDB
RGD ID:6832296
Promoter ID:MM_KWN:29376
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Kidney,   MEF_B6
Transcripts:OTTMUST00000030809,   UC008JUQ.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36260,618,886 - 60,619,957 (-)MPROMDB
RGD ID:6832293
Promoter ID:MM_KWN:29377
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   Kidney,   Liver,   Lung,   MEF_B4
Transcripts:ENSMUST00000112509,   NM_001141931,   UC008JUV.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36260,719,241 - 60,719,812 (-)MPROMDB
RGD ID:6877400
Promoter ID:EPDNEW_M2151
Type:multiple initiation site
Name:Rbms1_4
Description:Mus musculus RNA binding motif, single stranded interacting protein1 , transcript variant 3, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M2152  EPDNEW_M2153  EPDNEW_M2154  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38260,780,941 - 60,781,001EPDNEW
RGD ID:6832294
Promoter ID:MM_KWN:29381
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6
Transcripts:ENSMUST00000112510,   OTTMUST00000030807
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36260,800,841 - 60,801,537 (-)MPROMDB
RGD ID:6877402
Promoter ID:EPDNEW_M2152
Type:initiation region
Name:Rbms1_2
Description:Mus musculus RNA binding motif, single stranded interacting protein1 , transcript variant 3, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M2151  EPDNEW_M2153  EPDNEW_M2154  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38260,881,420 - 60,881,480EPDNEW
RGD ID:6877404
Promoter ID:EPDNEW_M2153
Type:multiple initiation site
Name:Rbms1_3
Description:Mus musculus RNA binding motif, single stranded interacting protein1 , transcript variant 3, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M2151  EPDNEW_M2152  EPDNEW_M2154  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38260,962,890 - 60,962,950EPDNEW
RGD ID:6877406
Promoter ID:EPDNEW_M2154
Type:initiation region
Name:Rbms1_1
Description:Mus musculus RNA binding motif, single stranded interacting protein1 , transcript variant 3, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M2151  EPDNEW_M2152  EPDNEW_M2153  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38260,963,204 - 60,963,264EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1861774 AgrOrtholog
Ensembl Genes ENSMUSG00000026970 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000028347 ENTREZGENE
  ENSMUST00000028347.13 UniProtKB/Swiss-Prot
  ENSMUST00000112509.2 UniProtKB/Swiss-Prot
  ENSMUST00000164147 ENTREZGENE
  ENSMUST00000164147.8 UniProtKB/TrEMBL
Gene3D-CATH 3.30.70.330 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Hud_Sxl_RNA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  MSSP1_RRM1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Nucleotide-bd_a/b_plait_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RBD_domain_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RRM_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:56878 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:1861774 ENTREZGENE
NCBI Gene 56878 ENTREZGENE
PANTHER OS02G0815200 PROTEIN UniProtKB/Swiss-Prot
  OS02G0815200 PROTEIN UniProtKB/Swiss-Prot
  OS02G0815200 PROTEIN UniProtKB/TrEMBL
  OS02G0815200 PROTEIN UniProtKB/TrEMBL
  RNA BINDING PROTEIN UniProtKB/TrEMBL
  RNA-BINDING MOTIF, SINGLE-STRANDED-INTERACTING PROTEIN 1 UniProtKB/TrEMBL
Pfam RRM_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Rbms1 PhenoGen
PRINTS HUDSXLRNA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE RRM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART RRM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF54928 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt E9PZ21 ENTREZGENE, UniProtKB/TrEMBL
  Q3TPK8_MOUSE UniProtKB/TrEMBL
  Q3TTE1_MOUSE UniProtKB/TrEMBL
  Q3TTX8 ENTREZGENE, UniProtKB/TrEMBL
  Q3TW38_MOUSE UniProtKB/TrEMBL
  Q3UI25 ENTREZGENE
  Q3UKR8 ENTREZGENE, UniProtKB/TrEMBL
  Q3UXU2 ENTREZGENE
  Q3V0L4 ENTREZGENE, UniProtKB/TrEMBL
  Q6PEU6 ENTREZGENE
  Q6PHC2 ENTREZGENE
  Q91W59 ENTREZGENE
  Q9WTK4 ENTREZGENE
  RBMS1_MOUSE UniProtKB/Swiss-Prot
UniProt Secondary Q3UI25 UniProtKB/Swiss-Prot
  Q3UXU2 UniProtKB/Swiss-Prot
  Q6PEU6 UniProtKB/Swiss-Prot
  Q6PHC2 UniProtKB/Swiss-Prot
  Q9WTK4 UniProtKB/Swiss-Prot