Nfatc2 (nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 2) - Rat Genome Database

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Gene: Nfatc2 (nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 2) Mus musculus
Analyze
Symbol: Nfatc2
Name: nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 2
RGD ID: 1317024
MGI Page MGI
Description: Enables DNA-binding transcription factor activity, RNA polymerase II-specific; RNA polymerase II cis-regulatory region sequence-specific DNA binding activity; and chromatin binding activity. Involved in negative regulation of transcription by RNA polymerase II and positive regulation of gene expression. Acts upstream of or within several processes, including calcineurin-NFAT signaling cascade; myotube cell development; and positive regulation of myoblast fusion. Located in chromatin; cytosol; and nucleus. Part of ribonucleoprotein complex and transcription regulator complex. Is expressed in several structures, including brain; genitourinary system; jaw; spinal cord; and thymus primordium. Orthologous to human NFATC2 (nuclear factor of activated T cells 2); PARTICIPATES IN calcineurin signaling pathway; nuclear factor of activated T-cells signaling pathway; Wnt signaling, non-canonical pathway; INTERACTS WITH 1,2-dimethylhydrazine; 2,3,7,8-tetrachlorodibenzodioxine; 3,3',5,5'-tetrabromobisphenol A.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: AI607462; NF; NF-ATc2; NF-ATp; NFA; NFAT pre-existing subunit; NFAT1; NFAT1-D; Nfatp; nuclear factor of activated T-cells, cytoplasmic 2; nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2; T-cell transcription factor NFAT1
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392168,318,330 - 168,443,900 (-)NCBIGRCm39mm39
GRCm39 Ensembl2168,318,330 - 168,443,577 (-)Ensembl
GRCm382168,476,410 - 168,601,657 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2168,476,410 - 168,601,657 (-)EnsemblGRCm38mm10GRCm38
MGSCv372168,301,910 - 168,427,155 (-)NCBIGRCm37mm9NCBIm37
MGSCv362168,167,615 - 168,292,860 (-)NCBImm8
Celera2174,418,074 - 174,542,304 (-)NCBICelera
Cytogenetic Map2H3NCBI
cM Map288.91NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(S)-nicotine  (ISO)
1,2-dimethylhydrazine  (EXP)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP)
3,3',5,5'-tetrabromobisphenol A  (EXP)
3,4-methylenedioxymethamphetamine  (EXP)
3-methylcholanthrene  (EXP)
4-hydroxyphenyl retinamide  (EXP)
acetamide  (ISO)
acetic acid  (ISO)
aflatoxin B1  (ISO)
aflatoxin B2  (ISO)
amphetamine  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (ISO)
benzo[a]pyrene  (EXP,ISO)
benzo[e]pyrene  (ISO)
Benzo[k]fluoranthene  (EXP)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (ISO)
bleomycin A2  (EXP,ISO)
buta-1,3-diene  (EXP)
cadmium dichloride  (ISO)
Calcimycin  (ISO)
calcitriol  (ISO)
calcium atom  (EXP)
calcium(0)  (EXP)
cannabidiol  (EXP)
carbon nanotube  (EXP)
choline  (EXP)
cisplatin  (ISO)
clofibrate  (EXP)
copper atom  (ISO)
copper(0)  (ISO)
crocidolite asbestos  (ISO)
cyclosporin A  (ISO)
dicrotophos  (ISO)
dieldrin  (ISO)
dioxygen  (ISO)
endosulfan  (ISO)
entinostat  (ISO)
ethanol  (EXP)
fisetin  (ISO)
folic acid  (EXP)
harmine  (ISO)
hydralazine  (ISO)
hydroquinone  (ISO)
hydroxychloroquine  (ISO)
ionomycin  (EXP,ISO)
L-methionine  (EXP)
methanol  (ISO)
methapyrilene  (ISO)
methylisothiazolinone  (ISO)
Muscarine  (EXP)
nicotine  (ISO)
nitrofen  (ISO)
Nor-9-carboxy-delta9-THC  (ISO)
p-menthan-3-ol  (ISO)
paracetamol  (EXP)
phorbol 13-acetate 12-myristate  (EXP,ISO)
pirinixic acid  (EXP)
serpentine asbestos  (ISO)
silicon dioxide  (EXP,ISO)
sodium acetate trihydrate  (EXP,ISO)
sodium arsenite  (ISO)
thapsigargin  (EXP)
triptonide  (EXP)
urethane  (ISO)
valproic acid  (ISO)
vincristine  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
chromatin  (IDA)
cytoplasm  (IDA,ISO)
cytosol  (IDA,ISO,TAS)
nucleoplasm  (ISO,TAS)
nucleus  (IDA,ISO)
ribonucleoprotein complex  (IDA)
transcription regulator complex  (IBA,IDA,IPI)

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
abnormal B cell number  (IAGP)
abnormal B cell physiology  (IAGP)
abnormal CD4-positive, alpha-beta T cell physiology  (IAGP)
abnormal cranium morphology  (IAGP)
abnormal double-negative T cell morphology  (IAGP)
abnormal immune system organ morphology  (IAGP)
abnormal immune system physiology  (IAGP)
abnormal interleukin secretion  (IAGP)
abnormal locomotor activation  (IAGP)
abnormal lymph node B cell domain morphology  (IAGP)
abnormal lymph node morphology  (IAGP)
abnormal lymphocyte cell number  (IAGP)
abnormal lymphocyte physiology  (IAGP)
abnormal mandible morphology  (IAGP)
abnormal mast cell physiology  (IAGP)
abnormal neurocranium morphology  (IAGP)
abnormal sensory neuron innervation pattern  (IAGP)
abnormal social/conspecific interaction  (IAGP)
abnormal spinal cord dorsal column morphology  (IAGP)
abnormal spleen germinal center morphology  (IAGP)
abnormal T cell differentiation  (IAGP)
abnormal T cell physiology  (IAGP)
abnormal T-helper 1 physiology  (IAGP)
abnormal T-helper 2 physiology  (IAGP)
abnormal thymus involution  (IAGP)
abnormal trigeminal nerve morphology  (IAGP)
abnormal zygomatic arch morphology  (IAGP)
blepharitis  (IAGP)
decreased anxiety-related response  (IAGP)
decreased embryo size  (IAGP)
decreased grip strength  (IAGP)
decreased interferon-gamma secretion  (IAGP)
decreased interleukin-13 secretion  (IAGP)
decreased interleukin-2 secretion  (IAGP)
decreased interleukin-4 secretion  (IAGP)
decreased T cell number  (IAGP)
decreased tumor necrosis factor secretion  (IAGP)
enlarged lymph nodes  (IAGP)
enlarged spleen  (IAGP)
enlarged thymus  (IAGP)
hypotonia  (IAGP)
increased activated T cell number  (IAGP)
increased B cell number  (IAGP)
increased IgE level  (IAGP)
increased IgG1 level  (IAGP)
increased immunoglobulin level  (IAGP)
increased inflammatory response  (IAGP)
increased interleukin-4 secretion  (IAGP)
increased interleukin-5 secretion  (IAGP)
increased lymphocyte cell number  (IAGP)
increased T cell apoptosis  (IAGP)
increased T cell number  (IAGP)
interstitial pneumonia  (IAGP)
lymph node hyperplasia  (IAGP)
postnatal growth retardation  (IAGP)
thymus hyperplasia  (IAGP)
References

Additional References at PubMed
PMID:7650004   PMID:7842733   PMID:7876165   PMID:7961754   PMID:8034712   PMID:8235597   PMID:8313907   PMID:8612134   PMID:8629027   PMID:8668213   PMID:8889548   PMID:8940147  
PMID:8973343   PMID:9017603   PMID:9195991   PMID:9232447   PMID:9388475   PMID:9430230   PMID:9442388   PMID:9514916   PMID:9516119   PMID:9660947   PMID:9710223   PMID:9768749  
PMID:9846484   PMID:10089876   PMID:10349636   PMID:10620601   PMID:10894164   PMID:10952728   PMID:11030334   PMID:11042159   PMID:11076861   PMID:11163226   PMID:11278367   PMID:11309414  
PMID:11520798   PMID:11740499   PMID:11786533   PMID:11937535   PMID:12091710   PMID:12150890   PMID:12355451   PMID:12368232   PMID:12453415   PMID:12477932   PMID:12594266   PMID:12734112  
PMID:12757709   PMID:12787506   PMID:12876285   PMID:14573689   PMID:14595020   PMID:14610273   PMID:14688323   PMID:15030770   PMID:15057750   PMID:15073183   PMID:15117942   PMID:15121840  
PMID:15319455   PMID:15327772   PMID:15347678   PMID:15516924   PMID:15539155   PMID:15618518   PMID:15657288   PMID:15684054   PMID:15728489   PMID:15743762   PMID:15747579   PMID:15790681  
PMID:15814705   PMID:15857835   PMID:15879595   PMID:16041384   PMID:16051745   PMID:16141072   PMID:16141073   PMID:16141075   PMID:16237070   PMID:16237086   PMID:16275763   PMID:16455648  
PMID:16511555   PMID:16554754   PMID:16602821   PMID:16849457   PMID:16880206   PMID:16908540   PMID:17082579   PMID:17103021   PMID:17114464   PMID:17198697   PMID:17360564   PMID:17430895  
PMID:17438271   PMID:17579027   PMID:17584983   PMID:17637565   PMID:17651692   PMID:17693409   PMID:17785810   PMID:17986443   PMID:18046413   PMID:18056040   PMID:18078995   PMID:18218901  
PMID:18287559   PMID:18319259   PMID:18329088   PMID:18477567   PMID:18566603   PMID:18664642   PMID:18675896   PMID:18676376   PMID:18710929   PMID:18809576   PMID:18846253   PMID:18962896  
PMID:19234182   PMID:19318584   PMID:19332646   PMID:19338776   PMID:19414766   PMID:19521566   PMID:19525933   PMID:19526482   PMID:19561615   PMID:19710169   PMID:19752193   PMID:20059953  
PMID:20093726   PMID:20097868   PMID:20351294   PMID:20367554   PMID:20371871   PMID:20631193   PMID:20696888   PMID:20834230   PMID:20948279   PMID:21148038   PMID:21225259   PMID:21267068  
PMID:21295565   PMID:21452283   PMID:21464221   PMID:21611965   PMID:21677750   PMID:21709260   PMID:21750088   PMID:21779340   PMID:21799768   PMID:21873635   PMID:22079596   PMID:22427656  
PMID:22457635   PMID:22490438   PMID:22738913   PMID:22844476   PMID:22865456   PMID:22922362   PMID:22988430   PMID:22991461   PMID:23105117   PMID:23110116   PMID:23123061   PMID:23125425  
PMID:23166323   PMID:23184643   PMID:23219532   PMID:23499491   PMID:23509367   PMID:23546880   PMID:23571271   PMID:23583303   PMID:23616576   PMID:23962643   PMID:24039733   PMID:24106272  
PMID:24161931   PMID:24248346   PMID:24301466   PMID:24352425   PMID:24507801   PMID:24894426   PMID:24945807   PMID:25037220   PMID:25074018   PMID:25105474   PMID:25318679   PMID:25496032  
PMID:25556111   PMID:25573264   PMID:25583478   PMID:25595785   PMID:25630465   PMID:25680272   PMID:25918731   PMID:26224862   PMID:26251235   PMID:26324768   PMID:26410627   PMID:26483414  
PMID:26777750   PMID:26851216   PMID:27158674   PMID:27399331   PMID:27935966   PMID:28172997   PMID:28424240   PMID:28505967   PMID:28630062   PMID:28834739   PMID:28894104   PMID:28972088  
PMID:29030115   PMID:29246443   PMID:30010214   PMID:30067971   PMID:30482854   PMID:30662552   PMID:30828328   PMID:31138536   PMID:31409917   PMID:31555297   PMID:32729137   PMID:33268486  


Genomics

Comparative Map Data
Nfatc2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392168,318,330 - 168,443,900 (-)NCBIGRCm39mm39
GRCm39 Ensembl2168,318,330 - 168,443,577 (-)Ensembl
GRCm382168,476,410 - 168,601,657 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2168,476,410 - 168,601,657 (-)EnsemblGRCm38mm10GRCm38
MGSCv372168,301,910 - 168,427,155 (-)NCBIGRCm37mm9NCBIm37
MGSCv362168,167,615 - 168,292,860 (-)NCBImm8
Celera2174,418,074 - 174,542,304 (-)NCBICelera
Cytogenetic Map2H3NCBI
cM Map288.91NCBI
NFATC2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl2051,386,957 - 51,562,831 (-)EnsemblGRCh38hg38GRCh38
GRCh382051,386,963 - 51,562,857 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh372050,003,500 - 50,179,378 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362049,441,172 - 49,592,665 (-)NCBINCBI36hg18NCBI36
Build 342049,441,311 - 49,592,665NCBI
Celera2046,712,014 - 46,883,320 (-)NCBI
Cytogenetic Map20q13.2NCBI
HuRef2046,752,104 - 46,926,810 (-)NCBIHuRef
CHM1_12049,909,009 - 50,084,547 (-)NCBICHM1_1
Nfatc2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.23157,195,970 - 157,328,640 (-)NCBI
Rnor_6.0 Ensembl3165,245,238 - 165,360,292 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.03165,241,750 - 165,374,644 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.03171,380,993 - 171,514,802 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43159,656,032 - 159,773,643 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.13159,560,378 - 159,679,702 (-)NCBI
Celera3155,769,159 - 155,882,096 (-)NCBICelera
Cytogenetic Map3q42NCBI
Nfatc2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554457,035,876 - 7,153,237 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554457,035,876 - 7,153,199 (+)NCBIChiLan1.0ChiLan1.0
NFATC2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.12048,858,238 - 49,034,007 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2048,858,238 - 49,034,007 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v02047,734,054 - 47,910,435 (-)NCBIMhudiblu_PPA_v0panPan3
NFATC2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12437,606,977 - 37,734,813 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2437,609,561 - 37,771,132 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2436,848,834 - 36,994,081 (-)NCBI
ROS_Cfam_1.02438,316,651 - 38,461,824 (-)NCBI
UMICH_Zoey_3.12437,552,559 - 37,697,657 (-)NCBI
UNSW_CanFamBas_1.02437,686,199 - 37,831,205 (-)NCBI
UU_Cfam_GSD_1.02438,231,487 - 38,376,716 (-)NCBI
LOC101976824
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640188,030,736 - 188,129,333 (+)NCBI
SpeTri2.0NW_0049365143,453,475 - 3,579,292 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NFATC2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1752,743,570 - 52,906,821 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11752,743,570 - 52,907,373 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21759,183,329 - 59,348,705 (-)NCBISscrofa10.2Sscrofa10.2susScr3
NFATC2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1212,412,935 - 12,585,275 (+)NCBI
ChlSab1.1 Ensembl212,430,744 - 12,540,131 (+)Ensembl
Vero_WHO_p1.0NW_02366605060,814,273 - 60,985,872 (+)NCBI
Nfatc2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247904,366,440 - 4,484,279 (+)NCBI

Position Markers
U36575  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm382168,480,020 - 168,480,165UniSTSGRCm38
MGSCv372168,305,520 - 168,305,665UniSTSGRCm37
Celera2174,421,689 - 174,421,834UniSTS
Cytogenetic Map2H3UniSTS
cM Map295.5UniSTS
Whitehead/MRC_RH12186.42UniSTS
D2Mit414  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm382168,536,699 - 168,536,807UniSTSGRCm38
MGSCv372168,362,199 - 168,362,307UniSTSGRCm37
Celera2174,477,178 - 174,477,278UniSTS
Cytogenetic Map2H3UniSTS
cM Map285.2UniSTS
Whitehead Genetic285.2UniSTS
Nfatc2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
MGSCv372168,396,341 - 168,396,632UniSTSGRCm37
Celera2174,511,243 - 174,511,534UniSTS
Cytogenetic Map2H3UniSTS
cM Map295.5UniSTS
Nfatc2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map2H3UniSTS
Nfatc2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm382168,570,841 - 168,571,132UniSTSGRCm38
MGSCv372168,396,341 - 168,396,632UniSTSGRCm37
Celera2174,511,243 - 174,511,534UniSTS
Cytogenetic Map2H3UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301677Alcp6_malcohol preference locus 6 (mouse)Not determined2163844614182113224Mouse
1301865Hdlq19_mHDL QTL 19 (mouse)Not determined2145676855179677006Mouse
1301618Bglu1_mblood glucose level 1 (mouse)Not determined2118112449174483070Mouse
1302003Sluc17_msusceptibility to lung cancer 17 (mouse)Not determined2162791700182113224Mouse
1558867Gnf3_mgrowth and fatness 3 (mouse)Not determined2152857301169276004Mouse
1302013Tbbmd3_mtotal body bone mineral density 3 (mouse)Not determined2145355029179355165Mouse
1301783Bhr1_mbronchial hyperresponsiveness 1 (mouse)Not determined2142751556178800659Mouse
1300806Aod4_mautoimmune ovarian dysgenesis 4 (mouse)Not determined2145386799179386921Mouse
1357435Epfq2_mepididymal fat pad weight QTL 2 (mouse)Not determined2162895006178800659Mouse
1301907Rends_mrenal disease susceptibility (mouse)Not determined2135857301169857441Mouse
1558991Tailq4_mtail length QTL 4 (mouse)Not determined2162895006178800659Mouse
1300846Pbwg11_mpostnatal body weight growth 11 (mouse)Not determined2139124680173124809Mouse
1300867Lore2_mloss of righting induced by ethanol 2 (mouse)Not determined2144673941181254801Mouse
1300622Cfld1_mcystic fibrosis lung disease 1 (mouse)Not determined2155982127182113224Mouse
1357537Lith12_mlithogenic gene 12 (mouse)Not determined2156354671182113224Mouse
1300676Prdt2_mprion disease incubation time 2 (mouse)Not determined2164873361182113224Mouse
1300688Nidd2k_mNidd2 on KK-A (mouse)Not determined2158236417178800659Mouse
1300751Bdt1_mbone density traits 1 (mouse)Not determined2150146982182113224Mouse
1301019Bmd6_mbone mineral density 6 (mouse)Not determined2151936377182113224Mouse
1301378Hpdty_mhindlimb polydactyly (mouse)Not determined2165822973168781758Mouse
1301348Alcp5_malcohol preference locus 5 (mouse)Not determined2163844614182113224Mouse
1301085Lrnx10_mlearning-contextual 10 (mouse)Not determined2150370301182113224Mouse
1558917Gct8_mgranulosa cell tumorigenesis 8 (mouse)Not determined2149394987182113224Mouse
1558939Gnf1_mgrowth and fatness 1 (mouse)Not determined2143931525169276004Mouse
4142211Nilac3_mnicotine induced locomotor activity 3 (mouse)Not determined2148822973182113224Mouse
4141703Chlq13_mcirculating hormone level QTL 13 (mouse)Not determined2135857301169857441Mouse
5491196Mobq6_mmultigenic obesity QTL 6 (mouse)Not determined285893925181254801Mouse
10054066Bwq9_mbody weight QTL 9 (mouse)Not determined2135857301169857441Mouse
10043956Gnf5_mgrowth and fatness 5 (mouse)Not determined2135857301169857441Mouse
4142450Lmr16_mleishmaniasis resistance 16 (mouse)Not determined2150370301182113224Mouse
12801456Intmrm1_mintima/media ratio modifier 1 (mouse)2142586427176586530Mouse
11038701Ltpr2e_mLeishmania tropica response 2e (mouse)2150370301182113224Mouse
12790983Bwq12_mbody weight QTL 12 (mouse)2148396284182113224Mouse
12910520Scgq3_mspontaneous crescentic glomerulonephritis QTL 3 (mouse)2151867353174547331Mouse
14747002Mancz3_mmandible centroid size 3 (mouse)2152487900182113224Mouse
12801461Intim1_mintima modifier 1 (mouse)2142586427176586530Mouse
11353826Bdln10_mbody length 10 (mouse)2140599562174599562Mouse
11341717Rvfs1_mRift Valley fever susceptibility 1 (mouse)2135590624173607823Mouse
12910810Pwbwq2_mpre-weaning body weight QTL 2 (mouse)2160769245169952882Mouse
12910800Pwgrq3_mpre-weaning growth rate QTL 3 (mouse)2160769245169952882Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:4506
Count of miRNA genes:889
Interacting mature miRNAs:1213
Transcripts:ENSMUST00000029057, ENSMUST00000074618, ENSMUST00000099067, ENSMUST00000109184, ENSMUST00000137451, ENSMUST00000138546, ENSMUST00000140137, ENSMUST00000151292, ENSMUST00000171689
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001037177 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001037178 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001136073 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001291168 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001291169 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001291170 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001291171 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001291172 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001291173 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001291174 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001291175 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001291176 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001291177 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001291178 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001291179 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_010899 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_111897 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_111898 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036159313 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AF289078 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK044489 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK081853 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK083119 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK135414 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK161174 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL840639 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL844575 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AW049827 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC064006 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BP757417 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CB590507 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466551 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  EU887581 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  EU887582 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  EU887583 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  EU887584 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  EU887585 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  EU887586 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  EU887587 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  EU887588 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  EU887589 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  EU887590 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  EU887591 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  EU887592 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  EU887593 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  EU887594 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  EU887595 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  EU887596 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  EU887597 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  EU887598 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  EU887599 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  EU887600 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  EU887601 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  EU887602 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  EU887603 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  EU887604 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U36575 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U36576 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000029057   ⟹   ENSMUSP00000029057
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl2168,519,098 - 168,590,191 (-)Ensembl
RefSeq Acc Id: ENSMUST00000074618   ⟹   ENSMUSP00000074198
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl2168,476,410 - 168,590,260 (-)Ensembl
RefSeq Acc Id: ENSMUST00000099067
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl2168,518,195 - 168,601,632 (-)Ensembl
RefSeq Acc Id: ENSMUST00000109184   ⟹   ENSMUSP00000104812
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl2168,476,410 - 168,590,365 (-)Ensembl
RefSeq Acc Id: ENSMUST00000137451   ⟹   ENSMUSP00000118329
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl2168,519,098 - 168,601,657 (-)Ensembl
RefSeq Acc Id: ENSMUST00000138546
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl2168,566,477 - 168,590,365 (-)Ensembl
RefSeq Acc Id: ENSMUST00000140137
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl2168,533,463 - 168,590,331 (-)Ensembl
RefSeq Acc Id: ENSMUST00000151292
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl2168,476,413 - 168,552,276 (-)Ensembl
RefSeq Acc Id: ENSMUST00000171689   ⟹   ENSMUSP00000130875
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl2168,518,203 - 168,601,655 (-)Ensembl
RefSeq Acc Id: NM_001037177   ⟹   NP_001032254
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392168,360,117 - 168,432,285 (-)NCBI
GRCm382168,518,197 - 168,590,365 (-)NCBI
MGSCv372168,301,910 - 168,427,155 (-)RGD
Celera2174,418,074 - 174,542,306 (-)NCBI
cM Map2 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001037178   ⟹   NP_001032255
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392168,360,117 - 168,443,577 (-)NCBI
GRCm382168,518,197 - 168,601,657 (-)NCBI
MGSCv372168,301,910 - 168,427,155 (-)RGD
Celera2174,418,074 - 174,542,306 (-)NCBI
cM Map2 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001136073   ⟹   NP_001129545
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392168,318,330 - 168,432,285 (-)NCBI
GRCm382168,476,410 - 168,590,365 (-)NCBI
MGSCv372168,301,910 - 168,427,155 (-)RGD
Celera2174,418,074 - 174,542,306 (-)NCBI
cM Map2 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001291168   ⟹   NP_001278097
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392168,318,330 - 168,443,577 (-)NCBI
GRCm382168,476,410 - 168,601,657 (-)NCBI
Celera2174,418,074 - 174,542,306 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001291169   ⟹   NP_001278098
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392168,318,330 - 168,443,577 (-)NCBI
GRCm382168,476,410 - 168,601,657 (-)NCBI
Celera2174,418,074 - 174,542,306 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001291170   ⟹   NP_001278099
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392168,318,330 - 168,443,577 (-)NCBI
GRCm382168,476,410 - 168,601,657 (-)NCBI
Celera2174,418,074 - 174,542,306 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001291171   ⟹   NP_001278100
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392168,318,330 - 168,443,577 (-)NCBI
GRCm382168,476,410 - 168,601,657 (-)NCBI
Celera2174,418,074 - 174,542,306 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001291172   ⟹   NP_001278101
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392168,360,117 - 168,443,577 (-)NCBI
GRCm382168,518,197 - 168,601,657 (-)NCBI
Celera2174,418,074 - 174,542,306 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001291173   ⟹   NP_001278102
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392168,318,330 - 168,443,577 (-)NCBI
GRCm382168,476,410 - 168,601,657 (-)NCBI
Celera2174,418,074 - 174,542,306 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001291174   ⟹   NP_001278103
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392168,318,330 - 168,443,577 (-)NCBI
GRCm382168,476,410 - 168,601,657 (-)NCBI
Celera2174,418,074 - 174,542,306 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001291175   ⟹   NP_001278104
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392168,318,330 - 168,432,285 (-)NCBI
GRCm382168,476,410 - 168,590,365 (-)NCBI
Celera2174,418,074 - 174,542,306 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001291176   ⟹   NP_001278105
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392168,318,330 - 168,432,285 (-)NCBI
GRCm382168,476,410 - 168,590,365 (-)NCBI
Celera2174,418,074 - 174,542,306 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001291177   ⟹   NP_001278106
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392168,318,330 - 168,432,285 (-)NCBI
GRCm382168,476,410 - 168,590,365 (-)NCBI
Celera2174,418,074 - 174,542,306 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001291178   ⟹   NP_001278107
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392168,318,330 - 168,432,285 (-)NCBI
GRCm382168,476,410 - 168,590,365 (-)NCBI
Celera2174,418,074 - 174,542,306 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001291179   ⟹   NP_001278108
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392168,360,117 - 168,432,285 (-)NCBI
GRCm382168,518,197 - 168,590,365 (-)NCBI
Celera2174,418,074 - 174,542,306 (-)NCBI
Sequence:
RefSeq Acc Id: NM_010899   ⟹   NP_035029
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392168,318,330 - 168,432,285 (-)NCBI
GRCm382168,476,410 - 168,590,365 (-)NCBI
MGSCv372168,301,910 - 168,427,155 (-)RGD
Celera2174,418,074 - 174,542,306 (-)NCBI
cM Map2 ENTREZGENE
Sequence:
RefSeq Acc Id: NR_111897
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392168,360,117 - 168,443,577 (-)NCBI
GRCm382168,518,197 - 168,601,657 (-)NCBI
Celera2174,418,074 - 174,542,306 (-)NCBI
Sequence:
RefSeq Acc Id: NR_111898
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392168,360,117 - 168,432,285 (-)NCBI
GRCm382168,518,197 - 168,590,365 (-)NCBI
Celera2174,418,074 - 174,542,306 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036159313   ⟹   XP_036015206
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392168,318,330 - 168,443,900 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001032254 (Get FASTA)   NCBI Sequence Viewer  
  NP_001032255 (Get FASTA)   NCBI Sequence Viewer  
  NP_001129545 (Get FASTA)   NCBI Sequence Viewer  
  NP_001278097 (Get FASTA)   NCBI Sequence Viewer  
  NP_001278098 (Get FASTA)   NCBI Sequence Viewer  
  NP_001278099 (Get FASTA)   NCBI Sequence Viewer  
  NP_001278100 (Get FASTA)   NCBI Sequence Viewer  
  NP_001278101 (Get FASTA)   NCBI Sequence Viewer  
  NP_001278102 (Get FASTA)   NCBI Sequence Viewer  
  NP_001278103 (Get FASTA)   NCBI Sequence Viewer  
  NP_001278104 (Get FASTA)   NCBI Sequence Viewer  
  NP_001278105 (Get FASTA)   NCBI Sequence Viewer  
  NP_001278106 (Get FASTA)   NCBI Sequence Viewer  
  NP_001278107 (Get FASTA)   NCBI Sequence Viewer  
  NP_001278108 (Get FASTA)   NCBI Sequence Viewer  
  NP_035029 (Get FASTA)   NCBI Sequence Viewer  
  XP_036015206 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAC52930 (Get FASTA)   NCBI Sequence Viewer  
  AAC52931 (Get FASTA)   NCBI Sequence Viewer  
  AAH64006 (Get FASTA)   NCBI Sequence Viewer  
  AAK49895 (Get FASTA)   NCBI Sequence Viewer  
  ACG55601 (Get FASTA)   NCBI Sequence Viewer  
  ACG55602 (Get FASTA)   NCBI Sequence Viewer  
  ACG55603 (Get FASTA)   NCBI Sequence Viewer  
  ACG55604 (Get FASTA)   NCBI Sequence Viewer  
  ACG55605 (Get FASTA)   NCBI Sequence Viewer  
  ACG55606 (Get FASTA)   NCBI Sequence Viewer  
  ACG55607 (Get FASTA)   NCBI Sequence Viewer  
  ACG55608 (Get FASTA)   NCBI Sequence Viewer  
  ACG55609 (Get FASTA)   NCBI Sequence Viewer  
  ACG55610 (Get FASTA)   NCBI Sequence Viewer  
  ACG55611 (Get FASTA)   NCBI Sequence Viewer  
  ACG55612 (Get FASTA)   NCBI Sequence Viewer  
  ACG55613 (Get FASTA)   NCBI Sequence Viewer  
  ACG55614 (Get FASTA)   NCBI Sequence Viewer  
  ACG55615 (Get FASTA)   NCBI Sequence Viewer  
  ACG55616 (Get FASTA)   NCBI Sequence Viewer  
  ACG55617 (Get FASTA)   NCBI Sequence Viewer  
  ACG55618 (Get FASTA)   NCBI Sequence Viewer  
  ACG55619 (Get FASTA)   NCBI Sequence Viewer  
  ACG55620 (Get FASTA)   NCBI Sequence Viewer  
  ACG55621 (Get FASTA)   NCBI Sequence Viewer  
  ACG55622 (Get FASTA)   NCBI Sequence Viewer  
  ACG55623 (Get FASTA)   NCBI Sequence Viewer  
  ACG55624 (Get FASTA)   NCBI Sequence Viewer  
  BAC38768 (Get FASTA)   NCBI Sequence Viewer  
  BAE36226 (Get FASTA)   NCBI Sequence Viewer  
  EDL06552 (Get FASTA)   NCBI Sequence Viewer  
  EDL06553 (Get FASTA)   NCBI Sequence Viewer  
  Q60591 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_035029   ⟸   NM_010899
- Peptide Label: isoform a
- UniProtKB: Q60591 (UniProtKB/Swiss-Prot),   B5B2P6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001032255   ⟸   NM_001037178
- Peptide Label: isoform c
- UniProtKB: Q8C443 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001032254   ⟸   NM_001037177
- Peptide Label: isoform b
- UniProtKB: B5B2R5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001129545   ⟸   NM_001136073
- Peptide Label: isoform d
- UniProtKB: B5B2P7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001278102   ⟸   NM_001291173
- Peptide Label: isoform j
- UniProtKB: B5B2Q6 (UniProtKB/TrEMBL),   Q3TTU8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001278100   ⟸   NM_001291171
- Peptide Label: isoform h
- UniProtKB: Q3TTU8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001278099   ⟸   NM_001291170
- Peptide Label: isoform g
- UniProtKB: B5B2Q4 (UniProtKB/TrEMBL),   Q3TTU8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001278103   ⟸   NM_001291174
- Peptide Label: isoform k
- UniProtKB: B5B2P8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001278097   ⟸   NM_001291168
- Peptide Label: isoform e
- UniProtKB: B5B2Q2 (UniProtKB/TrEMBL),   Q3TTU8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001278098   ⟸   NM_001291169
- Peptide Label: isoform f
- UniProtKB: B5B2P6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001278107   ⟸   NM_001291178
- Peptide Label: isoform j
- UniProtKB: B5B2P6 (UniProtKB/TrEMBL),   B5B2Q6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001278105   ⟸   NM_001291176
- Peptide Label: isoform h
- UniProtKB: Q3TTU8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001278106   ⟸   NM_001291177
- Peptide Label: isoform g
- UniProtKB: B5B2P6 (UniProtKB/TrEMBL),   B5B2Q4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001278104   ⟸   NM_001291175
- Peptide Label: isoform k
- UniProtKB: B5B2P8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001278101   ⟸   NM_001291172
- Peptide Label: isoform i
- UniProtKB: A2AQC8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001278108   ⟸   NM_001291179
- Peptide Label: isoform c
- UniProtKB: Q8C443 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000074198   ⟸   ENSMUST00000074618
RefSeq Acc Id: ENSMUSP00000029057   ⟸   ENSMUST00000029057
RefSeq Acc Id: ENSMUSP00000130875   ⟸   ENSMUST00000171689
RefSeq Acc Id: ENSMUSP00000104812   ⟸   ENSMUST00000109184
RefSeq Acc Id: ENSMUSP00000118329   ⟸   ENSMUST00000137451
RefSeq Acc Id: XP_036015206   ⟸   XM_036159313
- Peptide Label: isoform X1
Protein Domains
RHD

Promoters
RGD ID:6831921
Promoter ID:MM_KWN:33151
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Kidney
Transcripts:OTTMUST00000038309
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv362168,377,731 - 168,378,231 (-)MPROMDB
RGD ID:6831920
Promoter ID:MM_KWN:33152
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_4Hour,   ES_Cell,   Spleen
Transcripts:ENSMUST00000099068,   ENSMUST00000109184,   ENSMUST00000109186,   NM_001037177,   OTTMUST00000038314,   UC008OAU.1,   UC008OAZ.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv362168,415,739 - 168,416,239 (-)MPROMDB
RGD ID:6831922
Promoter ID:MM_KWN:33153
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Lung
Transcripts:OTTMUST00000038310,   OTTMUST00000038312
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv362168,426,806 - 168,427,306 (-)MPROMDB
RGD ID:6879854
Promoter ID:EPDNEW_M3371
Type:initiation region
Name:Nfatc2_1
Description:Mus musculus nuclear factor of activated T cells, cytoplasmic,calcineurin dependent 2 , transcript variant 3, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M3372  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm382168,590,365 - 168,590,425EPDNEW
RGD ID:6879842
Promoter ID:EPDNEW_M3372
Type:initiation region
Name:Nfatc2_2
Description:Mus musculus nuclear factor of activated T cells, cytoplasmic,calcineurin dependent 2 , transcript variant 3, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M3371  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm382168,601,633 - 168,601,693EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:102463 AgrOrtholog
Ensembl Genes ENSMUSG00000027544 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000029057 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUSP00000074198 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000104812 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000118329 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUSP00000130875 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000029057 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUST00000074618 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000109184 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000137451 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUST00000151292 ENTREZGENE
  ENSMUST00000171689 ENTREZGENE, UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  2.60.40.340 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Ig-like_fold UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig_E-set UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  IPT_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  NFAT UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  p53-like_TF_DNA-bd UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RHD_dimer UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RHD_DNA_bind_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RHD_DNA_bind_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:18019 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:102463 ENTREZGENE
NCBI Gene 18019 ENTREZGENE
PANTHER PTHR12533 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam RHD_dimer UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RHD_DNA_bind UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Nfatc2 PhenoGen
PRINTS NUCFACTORATC UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE REL_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART IPT UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF49417 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF81296 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A2AQC8 ENTREZGENE, UniProtKB/TrEMBL
  B5B2P6 ENTREZGENE, UniProtKB/TrEMBL
  B5B2P7 ENTREZGENE, UniProtKB/TrEMBL
  B5B2P8 ENTREZGENE, UniProtKB/TrEMBL
  B5B2Q2 ENTREZGENE, UniProtKB/TrEMBL
  B5B2Q4 ENTREZGENE, UniProtKB/TrEMBL
  B5B2Q6 ENTREZGENE, UniProtKB/TrEMBL
  B5B2Q8_MOUSE UniProtKB/TrEMBL
  B5B2Q9_MOUSE UniProtKB/TrEMBL
  B5B2R0_MOUSE UniProtKB/TrEMBL
  B5B2R2_MOUSE UniProtKB/TrEMBL
  B5B2R5 ENTREZGENE, UniProtKB/TrEMBL
  B5B2R8_MOUSE UniProtKB/TrEMBL
  NFAC2_MOUSE UniProtKB/Swiss-Prot
  Q3TTU8 ENTREZGENE, UniProtKB/TrEMBL
  Q60591 ENTREZGENE
  Q6P3F6_MOUSE UniProtKB/TrEMBL
  Q8C443 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary A2APK2 UniProtKB/Swiss-Prot
  A2APK3 UniProtKB/Swiss-Prot
  A2AQC5 UniProtKB/Swiss-Prot
  A2AQC6 UniProtKB/Swiss-Prot
  A2AQC7 UniProtKB/Swiss-Prot
  B5B2Q3 UniProtKB/Swiss-Prot
  Q60984 UniProtKB/Swiss-Prot
  Q60985 UniProtKB/Swiss-Prot
  Q91Y65 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2012-02-07 Nfatc2  nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 2  Nfatc2  nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2  Symbol and/or name change 5135510 APPROVED