Fcho1 (FCH domain only 1) - Rat Genome Database
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Gene: Fcho1 (FCH domain only 1) Mus musculus
Analyze
Symbol: Fcho1
Name: FCH domain only 1
RGD ID: 1317014
MGI Page MGI
Description: Predicted to have AP-2 adaptor complex binding activity and cytoskeletal protein binding activity. Predicted to be involved in clathrin coat assembly and clathrin-dependent endocytosis. Predicted to localize to several cellular components, including clathrin-coated pit; clathrin-coated vesicle; and nucleoplasm. Is expressed in central nervous system; ganglia; neural retina; and thymus primordium. Orthologous to human FCHO1 (FCH and mu domain containing endocytic adaptor 1); INTERACTS WITH 1,2-dimethylhydrazine; 2,3,7,8-tetrachlorodibenzodioxine; 3,4-methylenedioxymethamphetamine.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: 3322402E17Rik; F-BAR domain only protein 1; FCH domain only protein 1; KIAA0290; N28152
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39872,161,031 - 72,181,980 (-)NCBIGRCm39mm39
GRCm38871,708,387 - 71,729,330 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl871,708,387 - 71,725,716 (-)EnsemblGRCm38mm10GRCm38
MGSCv37874,232,286 - 74,249,580 (-)NCBIGRCm37mm9NCBIm37
MGSCv36874,637,635 - 74,654,635 (-)NCBImm8
Celera874,222,813 - 74,240,091 (-)NCBICelera
Cytogenetic Map8B3.3NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:12477932   PMID:15368895   PMID:15489334   PMID:15761153   PMID:16141072   PMID:16141073   PMID:17131200   PMID:21267068   PMID:21873635  
PMID:22484487   PMID:24130457   PMID:28190767  


Genomics

Comparative Map Data
Fcho1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39872,161,031 - 72,181,980 (-)NCBIGRCm39mm39
GRCm38871,708,387 - 71,729,330 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl871,708,387 - 71,725,716 (-)EnsemblGRCm38mm10GRCm38
MGSCv37874,232,286 - 74,249,580 (-)NCBIGRCm37mm9NCBIm37
MGSCv36874,637,635 - 74,654,635 (-)NCBImm8
Celera874,222,813 - 74,240,091 (-)NCBICelera
Cytogenetic Map8B3.3NCBI
FCHO1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1917,747,718 - 17,788,568 (+)EnsemblGRCh38hg38GRCh38
GRCh381917,747,744 - 17,788,562 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh371917,858,527 - 17,899,377 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361917,723,336 - 17,760,366 (+)NCBINCBI36hg18NCBI36
Build 341917,723,335 - 17,760,363NCBI
Celera1917,760,312 - 17,801,121 (+)NCBI
Cytogenetic Map19p13.11NCBI
HuRef1917,423,476 - 17,464,648 (+)NCBIHuRef
CHM1_11917,858,083 - 17,898,911 (+)NCBICHM1_1
Fcho1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.01620,136,008 - 20,153,344 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1620,136,008 - 20,148,867 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01619,995,969 - 20,013,245 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41618,904,594 - 18,921,871 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11618,905,027 - 18,921,868 (-)NCBI
Celera1618,616,022 - 18,633,180 (-)NCBICelera
Cytogenetic Map16p14NCBI
Fcho1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555243,450,529 - 3,465,848 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555243,451,204 - 3,470,163 (-)NCBIChiLan1.0ChiLan1.0
FCHO1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11918,206,424 - 18,245,987 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1918,213,869 - 18,245,725 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01917,230,202 - 17,271,133 (+)NCBIMhudiblu_PPA_v0panPan3
FCHO1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl2045,106,983 - 45,134,325 (-)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.12045,106,982 - 45,131,173 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Fcho1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_0049365963,234,603 - 3,265,484 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FCHO1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl259,958,122 - 60,028,859 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1259,958,122 - 59,990,511 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2259,527,564 - 59,559,965 (-)NCBISscrofa10.2Sscrofa10.2susScr3
FCHO1
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1 Ensembl616,238,045 - 16,265,440 (+)Ensembl
ChlSab1.1616,223,036 - 16,259,228 (+)NCBI
Fcho1
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046249081,327,569 - 1,340,741 (+)NCBI

Position Markers
RH125065  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38871,708,724 - 71,708,817UniSTSGRCm38
MGSCv37874,232,623 - 74,232,716UniSTSGRCm37
Celera874,223,150 - 74,223,243UniSTS
Cytogenetic Map8B3.3UniSTS
MARC_15285-15286:1013618347:1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38871,710,423 - 71,711,040UniSTSGRCm38
MGSCv37874,234,322 - 74,234,939UniSTSGRCm37
Celera874,224,849 - 74,225,466UniSTS
Cytogenetic Map8B3.3UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4140967Bmd39_mbone mineral density 39 (mouse)Not determined832016544117238700Mouse
1558875Eae31_mexperimental allergic encephalomyelitis susceptibility 31 (mouse)Not determined834642776114837007Mouse
1301013Capsq4_mcapsaicin sensitivity related QTL 4 (mouse)Not determined83616300092728652Mouse
27226754Femd6_mfemur midshaft diameter 6, 10 week (mouse)837400000109600000Mouse
12904744Carcdq1_mcardiac collagen deposition QTL 1 (mouse)83970925694689598Mouse
1301544Iba3_minduction of brown adipocytes 3 (mouse)Not determined84429488078295025Mouse
1301717Adip4_madiposity 4 (mouse)Not determined84763703081637146Mouse
10766453Char11_mP. chabaudi malaria resistance QTL 11 (mouse)84763703081637146Mouse
1301441Skull11_mskull morphology 11 (mouse)Not determined84773713481737254Mouse
1357715Alaa3_malopecia areata 3 (mouse)Not determined84879293982793021Mouse
14746987Manh64_mmandible shape 64 (mouse)85005330684053306Mouse
14747005Mancz7_mmandible centroid size 7 (mouse)85005330684053306Mouse
14700686Civq3_mcerebral infarct volume QTL 3 (mouse)85188219185882191Mouse
1301506Aevm1_mautoimmune extremity vasculitis in MRL mice 1 (mouse)Not determined85428781788287993Mouse
1301952Im3_mimmunoregulatory 3 (mouse)Not determined85470661488706763Mouse
10412287Carg3_mCandida albicans resistance gene 3 (mouse)Not determined85554502889545028Mouse
11353828Gf7_mgonadal fat pad weight 7 (mouse)85820147992201479Mouse
10043975Obq31_mobesity QTL 31 (mouse)Not determined85840977692409776Mouse
1301688Orch6_mautoimmune orchitis resistance 6 (mouse)Not determined86078685094786976Mouse
4141285Tgq18_mtriglyceride QTL 18 (mouse)Not determined6346010797460107Mouse
4141797Skmw16_mskeletal muscle weight 16 (mouse)Not determined86393954797939696Mouse
1357787Vtbt5_mvertebral trabecular bone trait 5 (mouse)Not determined86535776899357920Mouse
10043992Hbnr11_mHeligmosomoides bakeri nematode resistance 11 (mouse)Not determined86560020799600347Mouse
10766466Char12_mP. chabaudi malaria resistance QTL 12 (mouse)86826982782600347Mouse
1301767Fcsa2_mfemoral cross-sectional area 2 (mouse)Not determined870305375104305495Mouse
4142283Imraq2_mimmune response to AAV2 QTL 2 (mouse)Not determined870305375104305495Mouse
1558780Idd22_minsulin dependent diabetes susceptibility 22 (mouse)Not determined871102903105103009Mouse
4141395Char2a_mP. chabaudi malaria resistance QTL 2a (mouse)Not determined7113678390202598Mouse
4142023W3q5_mweight 3 weeks QTL 5 (mouse)Not determined71287817123895615Mouse
1357708Orq1_movulation rate QTL 1 (mouse)Not determined871287817123895615Mouse
1301872Cd4ts3_mCD4 T cell subset 3 (mouse)Not determined871396181105396393Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:2829
Count of miRNA genes:768
Interacting mature miRNAs:997
Transcripts:ENSMUST00000093444, ENSMUST00000123425, ENSMUST00000125092, ENSMUST00000126455, ENSMUST00000127005, ENSMUST00000136640, ENSMUST00000141323, ENSMUST00000143699, ENSMUST00000146100, ENSMUST00000149363, ENSMUST00000152742, ENSMUST00000153800
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_028715 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_028267 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_131256 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006509765 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006509766 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006509767 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006509770 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011242331 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030243805 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030243806 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036154324 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001778482 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_003947347 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_003947348 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_870464 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AA014311 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC162033 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK014382 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK088957 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK137333 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK172927 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC032207 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC115416 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BU614854 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY274600 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY601220 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466569 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000093444   ⟹   ENSMUSP00000091151
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl871,708,387 - 71,721,307 (-)Ensembl
RefSeq Acc Id: ENSMUST00000123425   ⟹   ENSMUSP00000123631
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl871,712,542 - 71,715,553 (-)Ensembl
RefSeq Acc Id: ENSMUST00000125092   ⟹   ENSMUSP00000123554
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl871,717,215 - 71,723,347 (-)Ensembl
RefSeq Acc Id: ENSMUST00000126455
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl871,715,862 - 71,721,865 (-)Ensembl
RefSeq Acc Id: ENSMUST00000127005
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl871,709,689 - 71,712,179 (-)Ensembl
RefSeq Acc Id: ENSMUST00000136640   ⟹   ENSMUSP00000119273
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl871,708,653 - 71,725,666 (-)Ensembl
RefSeq Acc Id: ENSMUST00000141323
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl871,714,360 - 71,716,635 (-)Ensembl
RefSeq Acc Id: ENSMUST00000143699
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl871,708,420 - 71,725,666 (-)Ensembl
RefSeq Acc Id: ENSMUST00000146100   ⟹   ENSMUSP00000117606
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl871,708,394 - 71,725,716 (-)Ensembl
RefSeq Acc Id: ENSMUST00000149363
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl871,709,637 - 71,711,106 (-)Ensembl
RefSeq Acc Id: ENSMUST00000152742
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl871,716,817 - 71,725,647 (-)Ensembl
RefSeq Acc Id: ENSMUST00000153800   ⟹   ENSMUSP00000116135
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl871,715,767 - 71,725,704 (-)Ensembl
RefSeq Acc Id: NM_028715   ⟹   NP_082991
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39872,161,031 - 72,178,325 (-)NCBI
GRCm38871,708,387 - 71,725,681 (-)NCBI
MGSCv37874,232,286 - 74,249,580 (-)RGD
Celera874,222,813 - 74,240,091 (-)RGD
cM Map8 ENTREZGENE
Sequence:
RefSeq Acc Id: NR_028267
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39872,161,031 - 72,178,325 (-)NCBI
GRCm38871,708,387 - 71,725,681 (-)NCBI
MGSCv37874,232,286 - 74,249,580 (-)RGD
Celera874,222,813 - 74,240,091 (-)RGD
cM Map8 ENTREZGENE
Sequence:
RefSeq Acc Id: NR_131256
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39872,161,031 - 72,178,325 (-)NCBI
GRCm38871,708,387 - 71,725,681 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006509765   ⟹   XP_006509828
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39872,161,037 - 72,175,986 (-)NCBI
GRCm38871,708,393 - 71,723,344 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006509766   ⟹   XP_006509829
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39872,161,037 - 72,178,362 (-)NCBI
GRCm38871,708,393 - 71,725,718 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006509767   ⟹   XP_006509830
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39872,161,037 - 72,175,986 (-)NCBI
GRCm38871,708,393 - 71,723,344 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006509770   ⟹   XP_006509833
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39872,161,037 - 72,175,983 (-)NCBI
GRCm38871,708,393 - 71,723,340 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011242331   ⟹   XP_011240633
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39872,161,037 - 72,178,382 (-)NCBI
GRCm38871,708,393 - 71,725,738 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030243805   ⟹   XP_030099665
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39872,161,037 - 72,181,980 (-)NCBI
GRCm38871,708,393 - 71,729,330 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030243806   ⟹   XP_030099666
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39872,161,037 - 72,178,362 (-)NCBI
GRCm38871,708,393 - 71,725,718 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036154324   ⟹   XP_036010217
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39872,161,037 - 72,171,808 (-)NCBI
RefSeq Acc Id: XR_001778482
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39872,161,037 - 72,178,382 (-)NCBI
GRCm38871,708,393 - 71,725,738 (-)NCBI
Sequence:
RefSeq Acc Id: XR_003947347
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39872,161,037 - 72,178,382 (-)NCBI
GRCm38871,708,393 - 71,725,738 (-)NCBI
Sequence:
RefSeq Acc Id: XR_003947348
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39872,161,037 - 72,178,382 (-)NCBI
GRCm38871,708,393 - 71,725,738 (-)NCBI
Sequence:
RefSeq Acc Id: XR_870464
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39872,161,037 - 72,178,382 (-)NCBI
GRCm38871,708,393 - 71,725,738 (-)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: NP_082991   ⟸   NM_028715
- UniProtKB: Q8K285 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006509829   ⟸   XM_006509766
- Peptide Label: isoform X1
- UniProtKB: Q8K285 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006509830   ⟸   XM_006509767
- Peptide Label: isoform X1
- UniProtKB: Q8K285 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006509828   ⟸   XM_006509765
- Peptide Label: isoform X1
- UniProtKB: Q8K285 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006509833   ⟸   XM_006509770
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_011240633   ⟸   XM_011242331
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_030099665   ⟸   XM_030243805
- Peptide Label: isoform X1
RefSeq Acc Id: XP_030099666   ⟸   XM_030243806
- Peptide Label: isoform X4
RefSeq Acc Id: ENSMUSP00000123554   ⟸   ENSMUST00000125092
RefSeq Acc Id: ENSMUSP00000091151   ⟸   ENSMUST00000093444
RefSeq Acc Id: ENSMUSP00000117606   ⟸   ENSMUST00000146100
RefSeq Acc Id: ENSMUSP00000116135   ⟸   ENSMUST00000153800
RefSeq Acc Id: ENSMUSP00000123631   ⟸   ENSMUST00000123425
RefSeq Acc Id: ENSMUSP00000119273   ⟸   ENSMUST00000136640
RefSeq Acc Id: XP_036010217   ⟸   XM_036154324
- Peptide Label: isoform X2
Protein Domains
F-BAR   MHD

Promoters
RGD ID:8667437
Promoter ID:EPDNEW_M11749
Type:initiation region
Name:Fcho1_2
Description:Mus musculus FCH domain only 1 , transcript variant 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M11750  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38871,723,315 - 71,723,375EPDNEW
RGD ID:8667439
Promoter ID:EPDNEW_M11750
Type:initiation region
Name:Fcho1_1
Description:Mus musculus FCH domain only 1 , transcript variant 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M11749  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38871,725,663 - 71,725,723EPDNEW
RGD ID:6843146
Promoter ID:MM_KWN:54820
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain
Transcripts:OTTMUST00000085966
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36874,234,606 - 74,235,106 (-)MPROMDB
RGD ID:6843144
Promoter ID:MM_KWN:54821
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain
Transcripts:OTTMUST00000085965
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36874,236,506 - 74,237,006 (-)MPROMDB
RGD ID:6843145
Promoter ID:MM_KWN:54823
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:ES_Cell
Transcripts:OTTMUST00000085964
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36874,240,401 - 74,240,901 (-)MPROMDB
RGD ID:6843148
Promoter ID:MM_KWN:54824
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain
Transcripts:UC009MEU.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36874,243,006 - 74,243,506 (-)MPROMDB
RGD ID:6843143
Promoter ID:MM_KWN:54827
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Spleen
Transcripts:OTTMUST00000085959
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36874,247,004 - 74,247,504 (-)MPROMDB
RGD ID:6843149
Promoter ID:MM_KWN:54828
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain
Transcripts:NR_028267,   OTTMUST00000085956,   OTTMUST00000085958,   OTTMUST00000085960,   OTTMUST00000085963,   UC009MEV.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36874,249,456 - 74,249,956 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1921265 AgrOrtholog
Ensembl Genes ENSMUSG00000070000 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000091151 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000116135 UniProtKB/TrEMBL
  ENSMUSP00000117606 UniProtKB/Swiss-Prot
  ENSMUSP00000119273 UniProtKB/TrEMBL
  ENSMUSP00000123554 UniProtKB/TrEMBL
  ENSMUSP00000123631 UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000093444 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000123425 UniProtKB/TrEMBL
  ENSMUST00000125092 UniProtKB/TrEMBL
  ENSMUST00000136640 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUST00000143699 ENTREZGENE
  ENSMUST00000146100 UniProtKB/Swiss-Prot
  ENSMUST00000153800 UniProtKB/TrEMBL
Gene3D-CATH 1.20.1270.60 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro AH/BAR_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  F_BAR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  FCH_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  FCHo1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  FCHo1_F-BAR UniProtKB/Swiss-Prot
  MHD UniProtKB/Swiss-Prot
  Muniscin_C UniProtKB/Swiss-Prot
KEGG Report mmu:74015 UniProtKB/Swiss-Prot
MGD MGI:1921265 ENTREZGENE
NCBI Gene 74015 ENTREZGENE
PANTHER PTHR23065:SF6 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam FCH UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  muHD UniProtKB/Swiss-Prot
PhenoGen Fcho1 PhenoGen
PROSITE F_BAR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  MHD UniProtKB/Swiss-Prot
SMART FCH UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF103657 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniGene Mm.22025 ENTREZGENE
UniProt D3YYE9_MOUSE UniProtKB/TrEMBL
  D3Z6N2_MOUSE UniProtKB/TrEMBL
  D6RCG0_MOUSE UniProtKB/TrEMBL
  F6VQ30_MOUSE UniProtKB/TrEMBL
  FCHO1_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
UniProt Secondary D3Z3Q5 UniProtKB/Swiss-Prot