Mrps17 (mitochondrial ribosomal protein S17)

Gene: Mrps17 (mitochondrial ribosomal protein S17) Mus musculus

Analyze

Symbol:

Mrps17

Name:

mitochondrial ribosomal protein S17

RGD ID:

1316965

MGI Page

MGI

Description:

Predicted to be a structural constituent of ribosome. Predicted to be involved in mitochondrial translation. Located in mitochondrion. Is expressed in several structures, including central nervous system; early conceptus; genitourinary system; liver; and sensory organ. Orthologous to human MRPS17 (mitochondrial ribosomal protein S17).

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

1810006P02Rik; 28S ribosomal protein S17, mitochondrial; Mprs17; MRP-S17; S17mt; small ribosomal subunit protein uS17m

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	MRPS17 (mitochondrial ribosomal protein S17)	HGNC	EggNOG, Ensembl, HGNC, HomoloGene, Inparanoid, NCBI, OrthoMCL, Panther, PhylomeDB, Treefam
Rattus norvegicus (Norway rat):	Mrps17 (mitochondrial ribosomal protein S17)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Mrps17 (mitochondrial ribosomal protein S17)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	MRPS17 (mitochondrial ribosomal protein S17)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	MRPS17L (mitochondrial ribosomal protein S17 like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Mrps17 (mitochondrial ribosomal protein S17)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	MRPS17 (mitochondrial ribosomal protein S17)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	MRPS17 (mitochondrial ribosomal protein S17)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Rattus norvegicus (Norway rat):	Mrps17 (mitochondrial ribosomal protein S17)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	MRPS17 (mitochondrial ribosomal protein S17)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	mrps17 (mitochondrial ribosomal protein S17)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid\|ZFIN)
Caenorhabditis elegans (roundworm):	mrps-17	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)
Drosophila melanogaster (fruit fly):	mRpS17	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	mrps17	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCm39 - Mouse Genome Assembly GRCm39

Position:

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	5	129,792,514 - 129,795,776 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	5	129,792,561 - 129,799,620 (+)	Ensembl		GRCm39 Ensembl
GRCm38	5	129,715,450 - 129,718,712 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	5	129,715,497 - 129,722,556 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	5	130,221,403 - 130,224,566 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	5	130,030,236 - 130,033,399 (+)	NCBI		MGSCv36	mm8
Celera	5	126,757,944 - 126,761,109 (+)	NCBI		Celera
Cytogenetic Map	5	G1.3	NCBI
cM Map	5	68.25	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

autistic disorder (ISO)

genetic disease (ISO)

pleomorphic xanthoastrocytoma (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(1->4)-beta-D-glucan (EXP)

1,2-dimethylhydrazine (EXP)

17alpha-ethynylestradiol (EXP)

17beta-estradiol (EXP)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,4-dinitrotoluene (ISO)

2-methylcholine (ISO)

3-isobutyl-1-methyl-7H-xanthine (ISO)

4-hydroxyphenyl retinamide (EXP)

6-propyl-2-thiouracil (ISO)

all-trans-retinoic acid (ISO)

amitrole (ISO)

arsane (ISO)

arsenic atom (ISO)

arsenite(3-) (ISO)

atrazine (ISO)

azoxystrobin (ISO)

bisphenol A (ISO)

Bisphenol B (ISO)

bisphenol F (ISO)

butan-1-ol (ISO)

caffeine (ISO)

chlorpyrifos (EXP)

copper(II) sulfate (ISO)

crocidolite asbestos (EXP)

dexamethasone (ISO)

dicrotophos (ISO)

disodium selenite (ISO)

folic acid (EXP)

gentamycin (ISO)

glycidyl methacrylate (ISO)

hydrogen peroxide (ISO)

indometacin (ISO)

ivermectin (ISO)

leflunomide (ISO)

methimazole (ISO)

perfluorooctane-1-sulfonic acid (EXP)

picoxystrobin (ISO)

pregnenolone 16alpha-carbonitrile (ISO)

pyrimidifen (ISO)

resveratrol (EXP)

rotenone (ISO)

SB 431542 (ISO)

sodium arsenite (EXP)

sodium fluoride (EXP)

sulfadimethoxine (ISO)

temozolomide (ISO)

thioacetamide (ISO)

titanium dioxide (EXP)

triptonide (EXP)

tris(2-butoxyethyl) phosphate (ISO)

tunicamycin (ISO)

urethane (ISO)

vinclozolin (ISO)

zinc atom (ISO)

zinc(0) (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

mitochondrial translation (ISS,NAS)

translation (IEA)

Cellular Component

mitochondrial inner membrane (NAS)

mitochondrial small ribosomal subunit (IBA,ISO,ISS,NAS)

mitochondrion (HDA)

ribonucleoprotein complex (IEA)

ribosome (IEA)

Molecular Function

protein binding (ISO)

RNA binding (IEA)

rRNA binding (IEA)

structural constituent of ribosome (ISS)

References

References - curated

#	Reference Title	Reference Citation
1.	Mouse brain organization revealed through direct genome-scale TF expression analysis.	Gray PA, etal., Science 2004 Dec 24;306(5705):2255-7.
2.	Functional annotation of a full-length mouse cDNA collection.	Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
3.	MGDs mouse GO annotations	MGD data from the GO Consortium
4.	Integrated analysis of protein composition, tissue diversity, and gene regulation in mouse mitochondria.	Mootha VK, etal., Cell 2003 Nov 26;115(5):629-40.
5.	Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs.	Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
6.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
7.	Proteomic analysis of the mammalian mitochondrial ribosome. Identification of protein components in the 28 S small subunit.	Suzuki T, etal., J Biol Chem 2001 Aug 31;276(35):33181-95. Epub 2001 Jun 11.

Additional References at PubMed

PMID:8889548	PMID:10349636	PMID:10725249	PMID:10922068	PMID:11042159	PMID:11076861	PMID:12477932	PMID:14610273	PMID:15489334	PMID:15782199	PMID:16141072	PMID:16141073
PMID:16602821	PMID:18287559	PMID:18614015	PMID:21267068	PMID:21873635	PMID:22988430	PMID:25838379	PMID:27023846	PMID:30550785	PMID:32987154	PMID:35449600	PMID:36114006

Genomics

Comparative Map Data

Mrps17
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	5	129,792,514 - 129,795,776 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	5	129,792,561 - 129,799,620 (+)	Ensembl		GRCm39 Ensembl
GRCm38	5	129,715,450 - 129,718,712 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	5	129,715,497 - 129,722,556 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	5	130,221,403 - 130,224,566 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	5	130,030,236 - 130,033,399 (+)	NCBI		MGSCv36	mm8
Celera	5	126,757,944 - 126,761,109 (+)	NCBI		Celera
Cytogenetic Map	5	G1.3	NCBI
cM Map	5	68.25	NCBI

MRPS17
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	7	55,951,877 - 55,956,500 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	7	55,951,877 - 55,956,500 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	7	56,019,570 - 56,024,193 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	7	55,987,105 - 55,990,528 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	7	55,793,819 - 55,797,240	NCBI
Celera	7	67,073,035 - 67,076,458 (+)	NCBI		Celera
Cytogenetic Map	7	p11.2	NCBI
HuRef	7	55,833,496 - 55,836,919 (+)	NCBI		HuRef
CHM1_1	7	56,022,642 - 56,026,065 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	7	56,111,666 - 56,116,287 (+)	NCBI		T2T-CHM13v2.0
CRA_TCAGchr7v2	7	56,023,858 - 56,027,281 (+)	NCBI

Mrps17
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	12	32,584,635 - 32,587,934 (-)	NCBI		GRCr8
mRatBN7.2	12	26,948,535 - 26,951,828 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	12	26,948,347 - 26,951,809 (-)	Ensembl		mRatBN7.2 Ensembl
mRatBN7.2 Ensembl	12	26,948,730 - 26,951,737 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	12	28,084,717 - 28,087,894 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	12	28,695,267 - 28,698,444 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	12	27,756,748 - 27,759,925 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	12	30,570,386 - 30,573,670 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	12	30,570,386 - 30,573,610 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	12	32,511,014 - 32,514,288 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	12	27,920,681 - 27,924,094 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	12	27,781,403 - 27,787,065 (+)	NCBI
Celera	12	28,654,067 - 28,657,244 (-)	NCBI		Celera
Cytogenetic Map	12	q13	NCBI

Mrps17
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955456	8,159,019 - 8,162,680 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955456	8,159,429 - 8,162,250 (+)	NCBI	ChiLan1.0	ChiLan1.0

MRPS17
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	6	60,803,825 - 60,808,838 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	7	109,128,544 - 109,133,564 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	7	56,564,787 - 56,569,715 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	7	56,988,629 - 56,992,900 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	7	56,988,778 - 56,993,467 (+)	Ensembl	panpan1.1		panPan2

MRPS17L
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	6	444,856 - 447,220 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
Dog10K_Boxer_Tasha	6	2,144,655 - 2,147,019 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	6	216,101 - 218,468 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	6	216,114 - 218,532 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
ROS_Cfam_1.0 Ensembl	6	248,613 - 251,031 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	6	192,599 - 194,961 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	6	186,501 - 188,865 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	6	357,226 - 359,590 (+)	NCBI		UU_Cfam_GSD_1.0

Mrps17
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404944	50,247,073 - 50,247,582 (+)	NCBI		HiC_Itri_2

MRPS17
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1	3	16,946,344 - 16,950,870 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	3	17,236,802 - 17,241,316 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

MRPS17
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	21	2,821,202 - 2,825,962 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	21	2,820,233 - 2,826,290 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666041	180,032,623 - 180,037,393 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Variants

Variants in Mrps17
87 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	1508
Count of miRNA genes:	423
Interacting mature miRNAs:	485
Transcripts:	ENSMUST00000042191, ENSMUST00000118420, ENSMUST00000119576, ENSMUST00000119604, ENSMUST00000119985, ENSMUST00000121339, ENSMUST00000121813, ENSMUST00000136108, ENSMUST00000138812, ENSMUST00000154358
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCm39)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
11341716	Rvfs3_m	Rift Valley fever susceptibility 3 (mouse)					5	26441234	138455402	Mouse
26884395	Humsd2_m	humerus midshaft diameter 2, 10 week (mouse)					5	70057343	132528839	Mouse
27226719	Tibw6_m	tibia width 6, proximal, 16 week (mouse)					5	72857343	139985755	Mouse
25314315	Mlh1fc4_m	MLH1 foci count 4 (mouse)					5	74460661	132528839	Mouse
13506928	Recrq8_m	recombination rate in male meiosis QTL 8 (mouse)					5	74460661	132528839	Mouse
1301362	Prnr1_m	prion resistance 1 (mouse)			Not determined		5	89418876	146787935	Mouse
1300940	Actd3_m	activity-distance traveled 3 (mouse)			Not determined		5	96320385	130320533	Mouse
1300659	Pcd8ts1_m	p-glycoprotein positive CD8 T cell subset 1 (mouse)			Not determined		5	97021753	131021986	Mouse
1301858	Smdq1_m	segregation of mitochondrial DNA QTL 1 (mouse)			Not determined		5	97021753	131021986	Mouse
12904945	Tammq2_m	tibialis anterior muscle mass QTL 2 (mouse)					5	100665965	134665965	Mouse
12904959	Smmq1_m	soleus muscle mass QTL 1 (mouse)					5	100665965	134665965	Mouse
12859290	Criq2_m	Citrobacter rodentium infection QTL 2 (mouse)					5	101332579	135332579	Mouse
1301624	Aevm2_m	autoimmune extremity vasculitis in MRL mice 2 (mouse)			Not determined		5	101863832	135864028	Mouse
14746986	Manh58_m	mandible shape 58 (mouse)					5	102446283	136446283	Mouse
11532736	Sluc33b_m	susceptibility to lung cancer 33b (mouse)					5	102945037	136945196	Mouse
10412202	Bbaa26_m	B.burgdorferi-associated arthritis 26 (mouse)			Not determined		5	104583688	138555455	Mouse
10412239	Alpq7_m	alcohol preference QTL 7 (mouse)			Not determined		5	104705939	138705939	Mouse
10043890	Trigq4_m	triglyceride QTL 4 (mouse)			Not determined		5	107906299	141906412	Mouse
4142473	Chlq11_m	circulating hormone level QTL 11 (mouse)			Not determined		5	107906299	141906412	Mouse
13464243	Ahl20_m	age related hearing loss, early onset 20 (mouse)					5	107906299	141906412	Mouse
10412197	Bbaa25_m	B.burgdorferi-associated arthritis 25 (mouse)			Not determined		5	109167240	143167381	Mouse
13464251	Ahl21_m	age related hearing loss, early onset 21 (mouse)					5	109167240	143167381	Mouse
1301543	Hypch_m	hypercholesterolemia (mouse)			Not determined		5	109238624	139118905	Mouse
1300913	Bwefm_m	body weight females and males day 10 (mouse)			Not determined		5	109439348	143439459	Mouse
1301102	Cia14_m	collagen induced arthritis 14 (mouse)			Not determined		5	113320385	138555455	Mouse
1301226	Bbaa2_m	B.burgdorferi-associated arthritis 2 (mouse)			Not determined		5	115156883	149157015	Mouse
1300827	Cora1_m	correlation in cytokine production 1 (mouse)			Not determined		5	115156883	149157015	Mouse
1301857	Bglq14_m	body growth late QTL 14 (mouse)			Not determined		5	118948964	151758149	Mouse
10412191	Bbaa24_m	B.burgdorferi-associated arthritis 24 (mouse)			Not determined		5	119945037	141700466	Mouse
4141081	Nidd7k_m	Nidd7 on KK-A (mouse)			Not determined			119945037	149347326	Mouse
11528552	Scram1_m	spinal cord resistance to astrocytoma modifier 1 (mouse)					5	121455402	151758149	Mouse
1301986	Bpq4_m	blood pressure QTL 4 (mouse)			Not determined		5	121555236	151758149	Mouse
1302079	Lbw3_m	lupus NZB x NZW 3 (mouse)			Not determined		5	124700335	151758149	Mouse
1301363	Pbwg13_m	postnatal body weight growth 13 (mouse)			Not determined		5	125133457	151758149	Mouse
1301715	Elmaz2_m	elevated maze behavior 2 (mouse)			Not determined		5	125178229	141700466	Mouse
13464142	Bbaa2a_m	B.burgdorferi-associated arthritis 2a (mouse)					5	128571199	130052971	Mouse
4141218	Ath24_m	atherosclerosis 24 (mouse)			Not determined			129520084	151758149	Mouse
12880406	Jcdq2_m	joint cartilage degeneration QTL 2 (mouse)					5	129787831	151758149	Mouse

Markers in Region

AU014729

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	5	129,718,234 - 129,718,468	UniSTS	GRCm38
MGSCv37	5	130,224,109 - 130,224,343	UniSTS	GRCm37
Celera	5	126,760,652 - 126,760,886	UniSTS
Cytogenetic Map	5	F	UniSTS
Whitehead/MRC_RH	5	1596.59	UniSTS

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001356954	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001356955	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001356956	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001356957	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001356958	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001356959	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_025450	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NR_151584	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_030254752	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_030254753	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AB049951	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AC120413	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK003008	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK007356	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK009568	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK134065	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK171397	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK215430	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC003890	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH466529	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSMUST00000042191 ⟹ ENSMUSP00000040281

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	5	129,792,567 - 129,795,544 (+)	Ensembl
GRCm38.p6 Ensembl	5	129,715,503 - 129,718,480 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000118420 ⟹ ENSMUSP00000112993

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	5	129,792,568 - 129,795,461 (+)	Ensembl
GRCm38.p6 Ensembl	5	129,715,504 - 129,718,397 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000119576 ⟹ ENSMUSP00000112779

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	5	129,792,561 - 129,799,620 (+)	Ensembl
GRCm38.p6 Ensembl	5	129,715,497 - 129,722,556 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000119604 ⟹ ENSMUSP00000114012

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	5	129,792,580 - 129,795,755 (+)	Ensembl
GRCm38.p6 Ensembl	5	129,715,516 - 129,718,691 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000119985 ⟹ ENSMUSP00000112762

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	5	129,792,641 - 129,795,511 (+)	Ensembl
GRCm38.p6 Ensembl	5	129,715,577 - 129,718,447 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000121339 ⟹ ENSMUSP00000114125

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	5	129,792,575 - 129,795,939 (+)	Ensembl
GRCm38.p6 Ensembl	5	129,715,511 - 129,718,875 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000121813 ⟹ ENSMUSP00000114059

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	5	129,792,622 - 129,795,354 (+)	Ensembl
GRCm38.p6 Ensembl	5	129,715,558 - 129,718,290 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000136108 ⟹ ENSMUSP00000122093

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	5	129,792,598 - 129,795,118 (+)	Ensembl
GRCm38.p6 Ensembl	5	129,715,534 - 129,718,054 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000138812 ⟹ ENSMUSP00000115097

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	5	129,792,761 - 129,793,897 (+)	Ensembl
GRCm38.p6 Ensembl	5	129,715,697 - 129,716,833 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000154358 ⟹ ENSMUSP00000115189

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	5	129,792,573 - 129,795,083 (+)	Ensembl
GRCm38.p6 Ensembl	5	129,715,509 - 129,718,019 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000199999

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	5	129,792,582 - 129,794,409 (+)	Ensembl
GRCm38.p6 Ensembl	5	129,715,518 - 129,717,345 (+)	Ensembl

RefSeq Acc Id:

NM_001356954 ⟹ NP_001343883

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	5	129,792,561 - 129,795,758 (+)	NCBI
GRCm38	5	129,715,497 - 129,718,694 (+)	NCBI

Sequence:

show sequence

GAGCGTCATCACGCTGCGCCCATGCTCCGCCGGCCTTGTGGTGGACTCCGGAGGTGCTTACAGA
CACATAATGTCAATAGTCCGTTCATCCGTCCACGCCAAATGGGTTGTGGGGAAGGTGATTGGTA
CAGCCATGATAAAAACGGCTAAAGTAAGAGCGACCAGACTTGTTTTGGATCCCTACTTACTGAA
GTACTTTAATAAACGGAAAACCTACTTTGCTCACGATGCCCTTCAGCAGTGCAGCGTCGGGGAC
ATCGTGCTCCTCAGAGCTTTGCCCGTCCCACGATCGAAGCATGTGAAGCACGAACTGGCTGAGA
TCATCTTCAAAGTCGGCCGAGTTATCGACCCCGTCACCGGAAAGCCCTGTGCAGGAACTGCCTA
CCTAGAGAGCCCCCTCAGCGAACCTCGGGAGGAGCTCAAGGTCTCCTGAACCCAGGAAAGGAGG
AGCCAGAGGCATTTCTGTCTGTGTGTTTTGCTCAATGGTTTTCATTACTGTTTCTCCTGTGACA
TTAAAAGTAGTCAGCAAAGTAAAGAGCTTAGTGCTCCATACAGGGTTGCATCCTTTTTCAGATT
CTCTGAACTGAAGGTACTGATTACTCTGTATGCCTAAGGATGCGGCATCATTTTGTGAGCTCTC
TGTCCTGGATCGTATGTATTGTCTCATTGTTCATTGCCTCCCCCAAAGAAATCTTGGACTGAGC
ACCTTTGTTTTGAAAGAAGAAAACCTTTTGATAATGACATAAAAGGCTAAACTTAGTTTTGGCA
GCTTGATTTTTCAAAATTTATTGTGTGTGTGTCCACAATGCCTGTGTGGGCACACCTGTGCCAC
CACACACACACTGTGGCAGCCAGAGGACAGCTTTGTGGAGTCCGGTCTCCTTTCACTCTTACGT
GGTTCCCAGTAACACACCTGTACCCACTGAGCCATCCTATTGACACTGAGTTTTAATGATTCAT
ATTCAAAGTAAA

hide sequence

RefSeq Acc Id:

NM_001356955 ⟹ NP_001343884

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	5	129,792,561 - 129,795,758 (+)	NCBI
GRCm38	5	129,715,497 - 129,718,694 (+)	NCBI

Sequence:

show sequence

GAGCGTCATCACGCTGCGCCCATGCTCCGCCGGCCTTGTGGTGGACTCCGGAGGAACCTGGCTC
ACCGGCCGAGGTCTTGCCGTGAGCCCTTGTGTGTACAGTAGCAGGCTGTAACTGAGACAGACAG
CTGCAGTAAGTGCTGTGGCCTCGAGATCGTGCCCTGGTAACGACAAGGAATCAACACCGCAGAC
TCGAGAGTTGAGCGCTTCAAACAACCCCGTTTATTAGTGCTTACAGACACATAATGTCAATAGT
CCGTTCATCCGTCCACGCCAAATGGGTTGTGGGGAAGGTGATTGGTACAGCCATGATAAAAACG
GCTAAAGTAAGAGCGACCAGACTTGTTTTGGATCCCTACTTACTGAAGTACTTTAATAAACGGA
AAACCTACTTTGCTCACGATGCCCTTCAGCAGTGCAGCGTCGGGGACATCGTGCTCCTCAGAGC
TTTGCCCGTCCCACGATCGAAGCATGTGAAGCACGAACTGGCTGAGATCATCTTCAAAGTCGGC
CGAGTTATCGACCCCGTCACCGGAAAGCCCTGTGCAGGAACTGCCTACCTAGAGAGCCCCCTCA
GCGAACCTCGGGAGGAGCTCAAGGTCTCCTGAACCCAGGAAAGGAGGAGCCAGAGGCATTTCTG
TCTGTGTGTTTTGCTCAATGGTTTTCATTACTGTTTCTCCTGTGACATTAAAAGTAGTCAGCAA
AGTAAAGAGCTTAGTGCTCCATACAGGGTTGCATCCTTTTTCAGATTCTCTGAACTGAAGGTAC
TGATTACTCTGTATGCCTAAGGATGCGGCATCATTTTGTGAGCTCTCTGTCCTGGATCGTATGT
ATTGTCTCATTGTTCATTGCCTCCCCCAAAGAAATCTTGGACTGAGCACCTTTGTTTTGAAAGA
AGAAAACCTTTTGATAATGACATAAAAGGCTAAACTTAGTTTTGGCAGCTTGATTTTTCAAAAT
TTATTGTGTGTGTGTCCACAATGCCTGTGTGGGCACACCTGTGCCACCACACACACACTGTGGC
AGCCAGAGGACAGCTTTGTGGAGTCCGGTCTCCTTTCACTCTTACGTGGTTCCCAGTAACACAC
CTGTACCCACTGAGCCATCCTATTGACACTGAGTTTTAATGATTCATATTCAAAGTAAA

hide sequence

RefSeq Acc Id:

NM_001356956 ⟹ NP_001343885

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	5	129,792,561 - 129,795,758 (+)	NCBI
GRCm38	5	129,715,497 - 129,718,694 (+)	NCBI

Sequence:

show sequence

GAGCGTCATCACGCTGCGCCCATGCTCCGCCGGCCTTGTGGTGGACTCCGGAGGAACCTGGCTC
ACCGGCCGAGGTCTTGCCGTGAGCCCTTGTGTGTACAGTAGCAGGCTGTAACTGAGACAGACAG
CTGCAGTAAGTGCTGTGGCCTCGAGATCGTGCCCTGGTAACGACAAGGAATCAACACCGCAGAC
TCGAGAGTTGAGCGCTTCAAACAACCCCGTTTATTAGTAATACTCCCTAACCCGGGACCAGTTC
CAAGAAAGGTTACCAAGTGACAAGGTGCTTACAGACACATAATGTCAATAGTCCGTTCATCCGT
CCACGCCAAATGGGTTGTGGGGAAGGTGATTGGTACAGCCATGATAAAAACGGCTAAAGTAAGA
GCGACCAGACTTGTTTTGGATCCCTACTTACTGAAGTACTTTAATAAACGGAAAACCTACTTTG
CTCACGATGCCCTTCAGCAGTGCAGCGTCGGGGACATCGTGCTCCTCAGAGCTTTGCCCGTCCC
ACGATCGAAGCATGTGAAGCACGAACTGGCTGAGATCATCTTCAAAGTCGGCCGAGTTATCGAC
CCCGTCACCGGAAAGCCCTGTGCAGGAACTGCCTACCTAGAGAGCCCCCTCAGCGAACCTCGGG
AGGAGCTCAAGGTCTCCTGAACCCAGGAAAGGAGGAGCCAGAGGCATTTCTGTCTGTGTGTTTT
GCTCAATGGTTTTCATTACTGTTTCTCCTGTGACATTAAAAGTAGTCAGCAAAGTAAAGAGCTT
AGTGCTCCATACAGGGTTGCATCCTTTTTCAGATTCTCTGAACTGAAGGTACTGATTACTCTGT
ATGCCTAAGGATGCGGCATCATTTTGTGAGCTCTCTGTCCTGGATCGTATGTATTGTCTCATTG
TTCATTGCCTCCCCCAAAGAAATCTTGGACTGAGCACCTTTGTTTTGAAAGAAGAAAACCTTTT
GATAATGACATAAAAGGCTAAACTTAGTTTTGGCAGCTTGATTTTTCAAAATTTATTGTGTGTG
TGTCCACAATGCCTGTGTGGGCACACCTGTGCCACCACACACACACTGTGGCAGCCAGAGGACA
GCTTTGTGGAGTCCGGTCTCCTTTCACTCTTACGTGGTTCCCAGTAACACACCTGTACCCACTG
AGCCATCCTATTGACACTGAGTTTTAATGATTCATATTCAAAGTAAA

hide sequence

RefSeq Acc Id:

NM_001356957 ⟹ NP_001343886

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	5	129,792,561 - 129,795,758 (+)	NCBI
GRCm38	5	129,715,497 - 129,718,694 (+)	NCBI

Sequence:

show sequence

GAGCGTCATCACGCTGCGCCCATGCTCCGCCGGCCTTGTGGTGGACTCCGGAGGTGAGCGAGGG
TGTCAACCAGGAACCTGGCTCACCGGCCGAGGTCTTGCCGTGAGCCCTTGTGTGTACAGTAGCA
GGCTGTAACTGAGACAGACAGCTGCAGTGCTTACAGACACATAATGTCAATAGTCCGTTCATCC
GTCCACGCCAAATGGGTTGTGGGGAAGGTGATTGGTACAGCCATGATAAAAACGGCTAAAGTAA
GAGCGACCAGACTTGTTTTGGATCCCTACTTACTGAAGTACTTTAATAAACGGAAAACCTACTT
TGCTCACGATGCCCTTCAGCAGTGCAGCGTCGGGGACATCGTGCTCCTCAGAGCTTTGCCCGTC
CCACGATCGAAGCATGTGAAGCACGAACTGGCTGAGATCATCTTCAAAGTCGGCCGAGTTATCG
ACCCCGTCACCGGAAAGCCCTGTGCAGGAACTGCCTACCTAGAGAGCCCCCTCAGCGAACCTCG
GGAGGAGCTCAAGGTCTCCTGAACCCAGGAAAGGAGGAGCCAGAGGCATTTCTGTCTGTGTGTT
TTGCTCAATGGTTTTCATTACTGTTTCTCCTGTGACATTAAAAGTAGTCAGCAAAGTAAAGAGC
TTAGTGCTCCATACAGGGTTGCATCCTTTTTCAGATTCTCTGAACTGAAGGTACTGATTACTCT
GTATGCCTAAGGATGCGGCATCATTTTGTGAGCTCTCTGTCCTGGATCGTATGTATTGTCTCAT
TGTTCATTGCCTCCCCCAAAGAAATCTTGGACTGAGCACCTTTGTTTTGAAAGAAGAAAACCTT
TTGATAATGACATAAAAGGCTAAACTTAGTTTTGGCAGCTTGATTTTTCAAAATTTATTGTGTG
TGTGTCCACAATGCCTGTGTGGGCACACCTGTGCCACCACACACACACTGTGGCAGCCAGAGGA
CAGCTTTGTGGAGTCCGGTCTCCTTTCACTCTTACGTGGTTCCCAGTAACACACCTGTACCCAC
TGAGCCATCCTATTGACACTGAGTTTTAATGATTCATATTCAAAGTAAA

hide sequence

RefSeq Acc Id:

NM_001356958 ⟹ NP_001343887

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	5	129,792,561 - 129,795,758 (+)	NCBI
GRCm38	5	129,715,497 - 129,718,694 (+)	NCBI

Sequence:

show sequence

GAGCGTCATCACGCTGCGCCCATGCTCCGCCGGCCTTGTGGTGGACTCCGGAGGAACCTGGCTC
ACCGGCCGAGGTCTTGCCGTGAGCCCTTGTGTGTACAGTAGCAGGCTGTAACTGAGACAGACAG
CTGCAGTAAGTGCTGTGGCCTCGAGATCGTGCCCTGGTAACGACAAGGAATCAACACCGCAGAC
TCGAGAGTTGAGCGCTTCAAACAACCCCGTTTATTAGTAATACTCCCTAACCCGGGACCAGTTC
CAAGAAAGGTGCTTACAGACACATAATGTCAATAGTCCGTTCATCCGTCCACGCCAAATGGGTT
GTGGGGAAGGTGATTGGTACAGCCATGATAAAAACGGCTAAAGTAAGAGCGACCAGACTTGTTT
TGGATCCCTACTTACTGAAGTACTTTAATAAACGGAAAACCTACTTTGCTCACGATGCCCTTCA
GCAGTGCAGCGTCGGGGACATCGTGCTCCTCAGAGCTTTGCCCGTCCCACGATCGAAGCATGTG
AAGCACGAACTGGCTGAGATCATCTTCAAAGTCGGCCGAGTTATCGACCCCGTCACCGGAAAGC
CCTGTGCAGGAACTGCCTACCTAGAGAGCCCCCTCAGCGAACCTCGGGAGGAGCTCAAGGTCTC
CTGAACCCAGGAAAGGAGGAGCCAGAGGCATTTCTGTCTGTGTGTTTTGCTCAATGGTTTTCAT
TACTGTTTCTCCTGTGACATTAAAAGTAGTCAGCAAAGTAAAGAGCTTAGTGCTCCATACAGGG
TTGCATCCTTTTTCAGATTCTCTGAACTGAAGGTACTGATTACTCTGTATGCCTAAGGATGCGG
CATCATTTTGTGAGCTCTCTGTCCTGGATCGTATGTATTGTCTCATTGTTCATTGCCTCCCCCA
AAGAAATCTTGGACTGAGCACCTTTGTTTTGAAAGAAGAAAACCTTTTGATAATGACATAAAAG
GCTAAACTTAGTTTTGGCAGCTTGATTTTTCAAAATTTATTGTGTGTGTGTCCACAATGCCTGT
GTGGGCACACCTGTGCCACCACACACACACTGTGGCAGCCAGAGGACAGCTTTGTGGAGTCCGG
TCTCCTTTCACTCTTACGTGGTTCCCAGTAACACACCTGTACCCACTGAGCCATCCTATTGACA
CTGAGTTTTAATGATTCATATTCAAAGTAAA

hide sequence

RefSeq Acc Id:

NM_001356959 ⟹ NP_001343888

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	5	129,792,561 - 129,795,758 (+)	NCBI
GRCm38	5	129,715,497 - 129,718,694 (+)	NCBI

Sequence:

show sequence

GAGCGTCATCACGCTGCGCCCATGCTCCGCCGGCCTTGTGGTGGACTCCGGAGGAACCTGGCTC
ACCGGCCGAGGTCTTGCCGTGAGCCCTTGTGTGTACAGTAGCAGGCTGTAACTGAGACAGACAG
CTGCAGTGCTTACAGACACATAATGTCAATAGTCCGTTCATCCGTCCACGCCAAATGGGTTGTG
GGGAAGGTGATTGGTACAGCCATGATAAAAACGGCTAAAGTAAGAGCGACCAGACTTGTTTTGG
ATCCCTACTTACTGAAGTACTTTAATAAACGGAAAACCTACTTTGCTCACGATGCCCTTCAGCA
GTGCAGCGTCGGGGACATCGTGCTCCTCAGAGCTTTGCCCGTCCCACGATCGAAGCATGTGAAG
CACGAACTGGCTGAGATCATCTTCAAAGTCGGCCGAGTTATCGACCCCGTCACCGGAAAGCCCT
GTGCAGGAACTGCCTACCTAGAGAGCCCCCTCAGCGAACCTCGGGAGGAGCTCAAGGTCTCCTG
AACCCAGGAAAGGAGGAGCCAGAGGCATTTCTGTCTGTGTGTTTTGCTCAATGGTTTTCATTAC
TGTTTCTCCTGTGACATTAAAAGTAGTCAGCAAAGTAAAGAGCTTAGTGCTCCATACAGGGTTG
CATCCTTTTTCAGATTCTCTGAACTGAAGGTACTGATTACTCTGTATGCCTAAGGATGCGGCAT
CATTTTGTGAGCTCTCTGTCCTGGATCGTATGTATTGTCTCATTGTTCATTGCCTCCCCCAAAG
AAATCTTGGACTGAGCACCTTTGTTTTGAAAGAAGAAAACCTTTTGATAATGACATAAAAGGCT
AAACTTAGTTTTGGCAGCTTGATTTTTCAAAATTTATTGTGTGTGTGTCCACAATGCCTGTGTG
GGCACACCTGTGCCACCACACACACACTGTGGCAGCCAGAGGACAGCTTTGTGGAGTCCGGTCT
CCTTTCACTCTTACGTGGTTCCCAGTAACACACCTGTACCCACTGAGCCATCCTATTGACACTG
AGTTTTAATGATTCATATTCAAAGTAAA

hide sequence

RefSeq Acc Id:

NM_025450 ⟹ NP_079726

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	5	129,792,561 - 129,795,758 (+)	NCBI
GRCm38	5	129,715,497 - 129,718,694 (+)	NCBI
MGSCv37	5	130,221,403 - 130,224,566 (+)	RGD
Celera	5	126,757,944 - 126,761,109 (+)	RGD
cM Map	5		ENTREZGENE

Sequence:

show sequence

GAGCGTCATCACGCTGCGCCCATGCTCCGCCGGCCTTGTGGTGGACTCCGGAGGAACCTGGCTC
ACCGGCCGAGGTCTTGCCGTGAGCCCTTGTGTGTACAGTAGCAGGCTGTAACTGAGACAGACAG
CTGCAGTAAGTGCTGTGGCCTCGAGATCGTGCCCTGGTAACGACAAGGAATCAACACCGCAGAC
TCGAGAGTTGAGCGCTTCAAACAACCCCGTTTATTAGTAATACTCCCTAACCCGGGACCAGTTC
CAAGAAAGGTTACCAAGTGACAAGGTGTTTCTAAATGGTTACAGCACAAATAATAGTGCTTACA
GACACATAATGTCAATAGTCCGTTCATCCGTCCACGCCAAATGGGTTGTGGGGAAGGTGATTGG
TACAGCCATGATAAAAACGGCTAAAGTAAGAGCGACCAGACTTGTTTTGGATCCCTACTTACTG
AAGTACTTTAATAAACGGAAAACCTACTTTGCTCACGATGCCCTTCAGCAGTGCAGCGTCGGGG
ACATCGTGCTCCTCAGAGCTTTGCCCGTCCCACGATCGAAGCATGTGAAGCACGAACTGGCTGA
GATCATCTTCAAAGTCGGCCGAGTTATCGACCCCGTCACCGGAAAGCCCTGTGCAGGAACTGCC
TACCTAGAGAGCCCCCTCAGCGAACCTCGGGAGGAGCTCAAGGTCTCCTGAACCCAGGAAAGGA
GGAGCCAGAGGCATTTCTGTCTGTGTGTTTTGCTCAATGGTTTTCATTACTGTTTCTCCTGTGA
CATTAAAAGTAGTCAGCAAAGTAAAGAGCTTAGTGCTCCATACAGGGTTGCATCCTTTTTCAGA
TTCTCTGAACTGAAGGTACTGATTACTCTGTATGCCTAAGGATGCGGCATCATTTTGTGAGCTC
TCTGTCCTGGATCGTATGTATTGTCTCATTGTTCATTGCCTCCCCCAAAGAAATCTTGGACTGA
GCACCTTTGTTTTGAAAGAAGAAAACCTTTTGATAATGACATAAAAGGCTAAACTTAGTTTTGG
CAGCTTGATTTTTCAAAATTTATTGTGTGTGTGTCCACAATGCCTGTGTGGGCACACCTGTGCC
ACCACACACACACTGTGGCAGCCAGAGGACAGCTTTGTGGAGTCCGGTCTCCTTTCACTCTTAC
GTGGTTCCCAGTAACACACCTGTACCCACTGAGCCATCCTATTGACACTGAGTTTTAATGATTC
ATATTCAAAGTAAA

hide sequence

RefSeq Acc Id:

NR_151584

RefSeq Status:

VALIDATED

Type:

NON-CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	5	129,792,561 - 129,795,758 (+)	NCBI
GRCm38	5	129,715,497 - 129,718,694 (+)	NCBI

Sequence:

show sequence

GAGCGTCATCACGCTGCGCCCATGCTCCGCCGGCCTTGTGGTGGACTCCGGAGTACTTTAATAA
ACGGAAAACCTACTTTGCTCACGATGCCCTTCAGCAGTGCAGCGTCGGGGACATCGTGCTCCTC
AGAGCTTTGCCCGTCCCACGATCGAAGCATGTGAAGCACGAACTGGCTGAGATCATCTTCAAAG
TCGGCCGAGTTATCGACCCCGTCACCGGAAAGCCCTGTGCAGGAACTGCCTACCTAGAGAGCCC
CCTCAGCGAACCTCGGGAGGAGCTCAAGGTCTCCTGAACCCAGGAAAGGAGGAGCCAGAGGCAT
TTCTGTCTGTGTGTTTTGCTCAATGGTTTTCATTACTGTTTCTCCTGTGACATTAAAAGTAGTC
AGCAAAGTAAAGAGCTTAGTGCTCCATACAGGGTTGCATCCTTTTTCAGATTCTCTGAACTGAA
GGTACTGATTACTCTGTATGCCTAAGGATGCGGCATCATTTTGTGAGCTCTCTGTCCTGGATCG
TATGTATTGTCTCATTGTTCATTGCCTCCCCCAAAGAAATCTTGGACTGAGCACCTTTGTTTTG
AAAGAAGAAAACCTTTTGATAATGACATAAAAGGCTAAACTTAGTTTTGGCAGCTTGATTTTTC
AAAATTTATTGTGTGTGTGTCCACAATGCCTGTGTGGGCACACCTGTGCCACCACACACACACT
GTGGCAGCCAGAGGACAGCTTTGTGGAGTCCGGTCTCCTTTCACTCTTACGTGGTTCCCAGTAA
CACACCTGTACCCACTGAGCCATCCTATTGACACTGAGTTTTAATGATTCATATTCAAAGTAAA

hide sequence

RefSeq Acc Id:

XM_030254752 ⟹ XP_030110612

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	5	129,792,514 - 129,795,776 (+)	NCBI
GRCm38	5	129,715,450 - 129,718,712 (+)	NCBI

Sequence:

show sequence

CAGGACTGGCGCCCTGTGAAATGGGAGGGGTGGGGCTAGCGCACCGTGAGCGTCATCACGCTGC
GCCCATGCTCCGCCGGCCTTGTGGTGGACTCCGGAGGAACCTGGCTCACCGGCCGAGGTCTTGC
CGTGAGCCCTTGTGTGTACAGTAGCAGGCTGTAACTGAGACAGACAGCTGCAGTAAGTGCTGTG
GCCTCGAGATCGTGCCCTGGTAACGACAAGGAATCAACACCGCAGACTCGAGAGTTGAGCGCTT
CAAACAACCCCGTTTATTAGTAATACTCCCTAACCCGGGACCAGTTCCAAGAAAGGTTACCAAG
TGACAAGGTGTTTCTAAATGGTTACAGCACAAATAATAGTGGGTAAAGAGTAAATAAGGTGACT
TGTCTTCTAGTGAGCTCGTAGGTACCTGTAGGTAGAAGAGCTTTGCTCTGTAGAGCTTCTGTGA
TCAGTAGCAGGGGAATTTTTCCGAATGATTAAGTTAGCTGGTCTCTTAACTGCTTATTTTCCCA
CTGTATCCTTCCTCATTTGGATAGAGGGACTCCAGTGTGACCAGTTTACTTGTGTGCTTACACA
CTAATAGTTCCTCGAAACACTTGTGAGCAGGCCATGTTATTCCTAACTTTTCTGTATAGGGAAT
ATGAGGGTTAGATCCATTTTCTACTTTGTAACTATTATAAAGATAAGACCTTTAAGGACCTCTG
GCCTGGCTGTTTCAGAAAAGTAGAAAAAATGACTACTGGACACAGGCATTGCTCCTGACAAAAT
TCACTTGATAAGCTCTAACCATCTGAAGGCTAGTTTAAATGGGGTATTGTGGCACCAGCCTGTG
TATAATTTCAGAGGATCCCCTGTAACGGGTGCTACAGAGGTTTTGAGCCACCATAAGGGTGCTG
GAAACTGCACCCAGGTCCTCTGGAAGAGCAACCAGTGCTTAGCTGCTTAGGTATCGCTCTAGCC
CAACTCATGGGAGGCTAATGTAGAAACATCTCCCAATTTAAGGCAAGCCTGGGCTACCGTGGAG
AAAGGTGCTTACAGACACATAATGTCAATAGTCCGTTCATCCGTCCACGCCAAATGGGTTGTGG
GGAAGGTGATTGGTACAGCCATGATAAAAACGGCTAAAGTAAGAGCGACCAGACTTGTTTTGGA
TCCCTACTTACTGAAGTACTTTAATAAACGGAAAACCTACTTTGCTCACGATGCCCTTCAGCAG
TGCAGCGTCGGGGACATCGTGCTCCTCAGAGCTTTGCCCGTCCCACGATCGAAGCATGTGAAGC
ACGAACTGGCTGAGATCATCTTCAAAGTCGGCCGAGTTATCGACCCCGTCACCGGAAAGCCCTG
TGCAGGAACTGCCTACCTAGAGAGCCCCCTCAGCGAACCTCGGGAGGAGCTCAAGGTCTCCTGA
ACCCAGGAAAGGAGGAGCCAGAGGCATTTCTGTCTGTGTGTTTTGCTCAATGGTTTTCATTACT
GTTTCTCCTGTGACATTAAAAGTAGTCAGCAAAGTAAAGAGCTTAGTGCTCCATACAGGGTTGC
ATCCTTTTTCAGATTCTCTGAACTGAAGGTACTGATTACTCTGTATGCCTAAGGATGCGGCATC
ATTTTGTGAGCTCTCTGTCCTGGATCGTATGTATTGTCTCATTGTTCATTGCCTCCCCCAAAGA
AATCTTGGACTGAGCACCTTTGTTTTGAAAGAAGAAAACCTTTTGATAATGACATAAAAGGCTA
AACTTAGTTTTGGCAGCTTGATTTTTCAAAATTTATTGTGTGTGTGTCCACAATGCCTGTGTGG
GCACACCTGTGCCACCACACACACACTGTGGCAGCCAGAGGACAGCTTTGTGGAGTCCGGTCTC
CTTTCACTCTTACGTGGTTCCCAGTAACACACCTGTACCCACTGAGCCATCCTATTGACACTGA
GTTTTAATGATTCATATTCAAAGTAAATTGGCCTGTTTTGTTGTG

hide sequence

RefSeq Acc Id:

XM_030254753 ⟹ XP_030110613

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	5	129,792,514 - 129,795,776 (+)	NCBI
GRCm38	5	129,715,450 - 129,718,712 (+)	NCBI

Sequence:

show sequence

CAGGACTGGCGCCCTGTGAAATGGGAGGGGTGGGGCTAGCGCACCGTGAGCGTCATCACGCTGC
GCCCATGCTCCGCCGGCCTTGTGGTGGACTCCGGAGGAACCTGGCTCACCGGCCGAGGTCTTGC
CGTGAGCCCTTGTGTGTACAGTAGCAGGCTGTAACTGAGACAGACAGCTGCAGTAAGTGCTGTG
GCCTCGAGATCGTGCCCTGGTAACGACAAGGAATCAACACCGCAGACTCGAGAGTTGAGCGCTT
CAAACAACCCCGTTTATTAGTAATACTCCCTAACCCGGGACCAGTTCCAAGAAAGGTTACCAAG
TGACAAGGTGTTTCTAAATGGTTACAGCACAAATAATAGTGGGTAAAGAGTAAATAAGGTGCTT
ACAGACACATAATGTCAATAGTCCGTTCATCCGTCCACGCCAAATGGGTTGTGGGGAAGGTGAT
TGGTACAGCCATGATAAAAACGGCTAAAGTAAGAGCGACCAGACTTGTTTTGGATCCCTACTTA
CTGAAGTACTTTAATAAACGGAAAACCTACTTTGCTCACGATGCCCTTCAGCAGTGCAGCGTCG
GGGACATCGTGCTCCTCAGAGCTTTGCCCGTCCCACGATCGAAGCATGTGAAGCACGAACTGGC
TGAGATCATCTTCAAAGTCGGCCGAGTTATCGACCCCGTCACCGGAAAGCCCTGTGCAGGAACT
GCCTACCTAGAGAGCCCCCTCAGCGAACCTCGGGAGGAGCTCAAGGTCTCCTGAACCCAGGAAA
GGAGGAGCCAGAGGCATTTCTGTCTGTGTGTTTTGCTCAATGGTTTTCATTACTGTTTCTCCTG
TGACATTAAAAGTAGTCAGCAAAGTAAAGAGCTTAGTGCTCCATACAGGGTTGCATCCTTTTTC
AGATTCTCTGAACTGAAGGTACTGATTACTCTGTATGCCTAAGGATGCGGCATCATTTTGTGAG
CTCTCTGTCCTGGATCGTATGTATTGTCTCATTGTTCATTGCCTCCCCCAAAGAAATCTTGGAC
TGAGCACCTTTGTTTTGAAAGAAGAAAACCTTTTGATAATGACATAAAAGGCTAAACTTAGTTT
TGGCAGCTTGATTTTTCAAAATTTATTGTGTGTGTGTCCACAATGCCTGTGTGGGCACACCTGT
GCCACCACACACACACTGTGGCAGCCAGAGGACAGCTTTGTGGAGTCCGGTCTCCTTTCACTCT
TACGTGGTTCCCAGTAACACACCTGTACCCACTGAGCCATCCTATTGACACTGAGTTTTAATGA
TTCATATTCAAAGTAAATTGGCCTGTTTTGTTGTG

hide sequence

Protein Sequences


Protein RefSeqs	NP_001343883	(Get FASTA)	NCBI Sequence Viewer
	NP_001343884	(Get FASTA)	NCBI Sequence Viewer
	NP_001343885	(Get FASTA)	NCBI Sequence Viewer
	NP_001343886	(Get FASTA)	NCBI Sequence Viewer
	NP_001343887	(Get FASTA)	NCBI Sequence Viewer
	NP_001343888	(Get FASTA)	NCBI Sequence Viewer
	NP_079726	(Get FASTA)	NCBI Sequence Viewer
	XP_030110612	(Get FASTA)	NCBI Sequence Viewer
	XP_030110613	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH03890	(Get FASTA)	NCBI Sequence Viewer
	BAB22509	(Get FASTA)	NCBI Sequence Viewer
	BAB24983	(Get FASTA)	NCBI Sequence Viewer
	BAB26365	(Get FASTA)	NCBI Sequence Viewer
	BAB41004	(Get FASTA)	NCBI Sequence Viewer
	EDL19503	(Get FASTA)	NCBI Sequence Viewer
	EDL19504	(Get FASTA)	NCBI Sequence Viewer
	EDL19505	(Get FASTA)	NCBI Sequence Viewer
	EDL19506	(Get FASTA)	NCBI Sequence Viewer
	EDL19507	(Get FASTA)	NCBI Sequence Viewer
	EDL19508	(Get FASTA)	NCBI Sequence Viewer
	EDL19509	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSMUSP00000040281
	ENSMUSP00000040281.6
	ENSMUSP00000112762.2
	ENSMUSP00000112779
	ENSMUSP00000112779.2
	ENSMUSP00000112993
	ENSMUSP00000112993.2
	ENSMUSP00000114012
	ENSMUSP00000114012.2
	ENSMUSP00000114059.2
	ENSMUSP00000114125
	ENSMUSP00000114125.2
	ENSMUSP00000115097.2
	ENSMUSP00000115189.3
	ENSMUSP00000122093.2
GenBank Protein	Q9CQE3	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	NP_079726 ⟸ NM_025450
- Peptide Label:	precursor
- UniProtKB:	Q9CQE3 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MSIVRSSVHAKWVVGKVIGTAMIKTAKVRATRLVLDPYLLKYFNKRKTYFAHDALQQCSVGDIV LLRALPVPRSKHVKHELAEIIFKVGRVIDPVTGKPCAGTAYLESPLSEPREELKVS hide sequence

RefSeq Acc Id:	XP_030110612 ⟸ XM_030254752
- Peptide Label:	isoform X1
- UniProtKB:	Q9CQE3 (UniProtKB/Swiss-Prot)

RefSeq Acc Id:	XP_030110613 ⟸ XM_030254753
- Peptide Label:	isoform X1
- UniProtKB:	Q9CQE3 (UniProtKB/Swiss-Prot)

RefSeq Acc Id:	NP_001343886 ⟸ NM_001356957
- Peptide Label:	precursor
- UniProtKB:	Q9CQE3 (UniProtKB/Swiss-Prot)

RefSeq Acc Id:	NP_001343885 ⟸ NM_001356956
- Peptide Label:	precursor
- UniProtKB:	Q9CQE3 (UniProtKB/Swiss-Prot)

RefSeq Acc Id:	NP_001343887 ⟸ NM_001356958
- Peptide Label:	precursor
- UniProtKB:	Q9CQE3 (UniProtKB/Swiss-Prot)

RefSeq Acc Id:	NP_001343884 ⟸ NM_001356955
- Peptide Label:	precursor
- UniProtKB:	Q9CQE3 (UniProtKB/Swiss-Prot)

RefSeq Acc Id:	NP_001343888 ⟸ NM_001356959
- Peptide Label:	precursor
- UniProtKB:	Q9CQE3 (UniProtKB/Swiss-Prot)

RefSeq Acc Id:	NP_001343883 ⟸ NM_001356954
- Peptide Label:	precursor
- UniProtKB:	Q9CQE3 (UniProtKB/Swiss-Prot)

RefSeq Acc Id:

ENSMUSP00000112762 ⟸ ENSMUST00000119985

RefSeq Acc Id:

ENSMUSP00000112779 ⟸ ENSMUST00000119576

RefSeq Acc Id:

ENSMUSP00000114012 ⟸ ENSMUST00000119604

RefSeq Acc Id:

ENSMUSP00000115097 ⟸ ENSMUST00000138812

RefSeq Acc Id:

ENSMUSP00000112993 ⟸ ENSMUST00000118420

RefSeq Acc Id:

ENSMUSP00000114125 ⟸ ENSMUST00000121339

RefSeq Acc Id:

ENSMUSP00000115189 ⟸ ENSMUST00000154358

RefSeq Acc Id:

ENSMUSP00000040281 ⟸ ENSMUST00000042191

RefSeq Acc Id:

ENSMUSP00000122093 ⟸ ENSMUST00000136108

RefSeq Acc Id:

ENSMUSP00000114059 ⟸ ENSMUST00000121813

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q9CQE3-F1-model_v2	AlphaFold	Q9CQE3	1-120	view protein structure

Promoters

RGD ID:

6888182

Promoter ID:

EPDNEW_M7542

Type:

initiation region

Name:

Mrps17_1

Description:

Mus musculus mitochondrial ribosomal protein S17 , transcriptvariant 7, mRNA.

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38	5	129,715,525 - 129,715,585	EPDNEW

RGD ID:

6837921

Promoter ID:

MM_KWN:44209

Type:

CpG-Island

SO ACC ID:

SO:0000170

Source:

MPROMDB

Tissues & Cell Lines:

3T3L1_Day0, 3T3L1_Day1, 3T3L1_Day2, 3T3L1_Day3, 3T3L1_Day4, BoneMarrow_0Hour, BoneMarrow_2Hour, BoneMarrow_4Hour, Brain, ES_Cell, Kidney, Liver, Lung, MEF_B4, MEF_B6, Spleen

Transcripts:

ENSMUST00000118420, ENSMUST00000119576, ENSMUST00000119604, ENSMUST00000119985, ENSMUST00000121339, ENSMUST00000121813, OTTMUST00000068418, OTTMUST00000068419, UC008ZTD.1, UC008ZTE.1

Position:

Mouse Assembly	Chr	Position (strand)	Source
MGSCv36	5	130,221,081 - 130,221,581 (+)	MPROMDB

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	MGI:1913508	AgrOrtholog
Ensembl Genes	ENSMUSG00000034211	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript	ENSMUST00000042191	ENTREZGENE
	ENSMUST00000042191.12	UniProtKB/Swiss-Prot
	ENSMUST00000118420	ENTREZGENE
	ENSMUST00000118420.8	UniProtKB/Swiss-Prot
	ENSMUST00000119576	ENTREZGENE
	ENSMUST00000119576.8	UniProtKB/Swiss-Prot
	ENSMUST00000119604	ENTREZGENE
	ENSMUST00000119604.8	UniProtKB/Swiss-Prot
	ENSMUST00000119985.2	UniProtKB/Swiss-Prot
	ENSMUST00000121339	ENTREZGENE
	ENSMUST00000121339.2	UniProtKB/Swiss-Prot
	ENSMUST00000121813.8	UniProtKB/Swiss-Prot
	ENSMUST00000136108.8	UniProtKB/TrEMBL
	ENSMUST00000138812.2	UniProtKB/TrEMBL
	ENSMUST00000154358.6	UniProtKB/TrEMBL
Gene3D-CATH	2.40.50.140	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro	NA-bd_OB-fold	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Ribosomal_S17/S11	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	S17mt	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	mmu:66258	UniProtKB/Swiss-Prot
MGD	MGI:1913508	ENTREZGENE
NCBI Gene	66258	ENTREZGENE
PANTHER	28S RIBOSOMAL PROTEIN S17, MITOCHONDRIAL	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	PTHR24088	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam	Ribosomal_S17	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Mrps17	PhenoGen
Superfamily-SCOP	SSF50249	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt	D3YWF8_MOUSE	UniProtKB/TrEMBL
	D3YX95_MOUSE	UniProtKB/TrEMBL
	D3Z198_MOUSE	UniProtKB/TrEMBL
	Q9CQE3	ENTREZGENE, UniProtKB/Swiss-Prot

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar