Catsper2 (cation channel, sperm associated 2) - Rat Genome Database
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Gene: Catsper2 (cation channel, sperm associated 2) Mus musculus
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Symbol: Catsper2
Name: cation channel, sperm associated 2
RGD ID: 1316922
MGI Page MGI
Description: Predicted to have calcium activated cation channel activity; calcium channel activity; and voltage-gated ion channel activity. Involved in fertilization; flagellated sperm motility; and sperm capacitation. Localizes to CatSper complex and sperm flagellum. Orthologous to human CATSPER2 (cation channel sperm associated 2); INTERACTS WITH carbon nanotube; Matrine; monosodium L-glutamate.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: cation channel sperm-associated protein 2
RGD Orthologs
Human
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392121,222,109 - 121,245,082 (-)NCBIGRCm39mm39
GRCm39 Ensembl2121,223,112 - 121,244,273 (-)Ensembl
GRCm382121,391,633 - 121,414,598 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2121,392,631 - 121,413,792 (-)EnsemblGRCm38mm10GRCm38
MGSCv372121,220,091 - 121,239,528 (-)NCBIGRCm37mm9NCBIm37
MGSCv362121,085,800 - 121,104,976 (-)NCBImm8
Celera2122,544,956 - 122,564,491 (-)NCBICelera
Cytogenetic Map2E5NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:11675491   PMID:12477932   PMID:14610273   PMID:14657366   PMID:16036917   PMID:16141072   PMID:16141073   PMID:17174296  
PMID:17227845   PMID:17554080   PMID:17967808   PMID:18607386   PMID:18799693   PMID:19210926   PMID:21224844   PMID:21267068   PMID:21677750   PMID:21873635   PMID:29371110   PMID:29617656  


Genomics

Comparative Map Data
Catsper2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392121,222,109 - 121,245,082 (-)NCBIGRCm39mm39
GRCm39 Ensembl2121,223,112 - 121,244,273 (-)Ensembl
GRCm382121,391,633 - 121,414,598 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2121,392,631 - 121,413,792 (-)EnsemblGRCm38mm10GRCm38
MGSCv372121,220,091 - 121,239,528 (-)NCBIGRCm37mm9NCBIm37
MGSCv362121,085,800 - 121,104,976 (-)NCBImm8
Celera2122,544,956 - 122,564,491 (-)NCBICelera
Cytogenetic Map2E5NCBI
CATSPER2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1543,628,503 - 43,668,118 (-)EnsemblGRCh38hg38GRCh38
GRCh381543,628,503 - 43,648,884 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh371543,920,701 - 43,941,082 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361541,710,064 - 41,728,331 (-)NCBINCBI36hg18NCBI36
Build 341541,718,926 - 41,728,331NCBI
Celera1520,691,389 - 20,709,656 (+)NCBI
Cytogenetic Map15q15.3NCBI
HuRef1520,752,653 - 20,770,807 (-)NCBIHuRef
CHM1_11544,040,849 - 44,059,128 (-)NCBICHM1_1
Catsper2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.23108,368,654 - 108,389,380 (-)NCBI
Rnor_6.0 Ensembl3113,357,365 - 113,376,751 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.03113,357,361 - 113,379,498 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.03119,896,994 - 119,916,645 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43108,196,792 - 108,216,182 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.13108,097,582 - 108,116,972 (-)NCBI
Celera3107,270,168 - 107,289,371 (-)NCBICelera
Cytogenetic Map3q35NCBI
Catsper2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554093,925,106 - 3,940,566 (-)NCBIChiLan1.0ChiLan1.0
CATSPER2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13010,471,798 - 10,487,948 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3010,471,814 - 10,487,739 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3010,530,188 - 10,546,338 (-)NCBI
ROS_Cfam_1.03010,608,302 - 10,624,457 (-)NCBI
UMICH_Zoey_3.13010,517,536 - 10,533,624 (-)NCBI
UNSW_CanFamBas_1.03010,639,194 - 10,655,360 (-)NCBI
UU_Cfam_GSD_1.03010,759,094 - 10,775,244 (-)NCBI
Catsper2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864088,942,974 - 88,961,194 (-)NCBI
SpeTri2.0NW_0049364716,791,490 - 6,809,048 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CATSPER2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1127,814,343 - 127,829,436 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11127,814,349 - 127,831,023 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21142,644,000 - 142,658,310 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CATSPER2
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12639,300,273 - 39,325,846 (+)NCBI
Catsper2
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247319,707,912 - 9,721,239 (-)NCBI

Position Markers
PMC299835P1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm382121,412,871 - 121,413,508UniSTSGRCm38
MGSCv372121,238,607 - 121,239,244UniSTSGRCm37
Celera2122,563,574 - 122,564,207UniSTS
Cytogenetic Map2E5UniSTS
cM Map269.0UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1302174Dssc2_mdextran sodium sulfate induced colitis QTL2 (mouse)Not determined224334620148858457Mouse
4141854T2dm2sa_mtype 2 diabetes mellitus 2 in SMXA RI mice (mouse)Not determined229417935148533014Mouse
1301344Lith1_mlithogenic gene 1 (mouse)Not determined245457623145470727Mouse
13824983Vclq1_mcurvilinear velocity QTL 1 (mouse)262000000137000000Mouse
5491197Mobq5_mmultigenic obesity QTL 5 (mouse)Not determined265439402162677006Mouse
11528549Sluc31_msusceptibility to lung cancer 31 (mouse)274693773129371085Mouse
4141155Plast2b_mplasma plant sterol 2b (mouse)Not determined284182854148680255Mouse
10412082Hylaq1_mHyperlocomotor activity related QTL 1 (mouse)Not determined284182854148825550Mouse
5491196Mobq6_mmultigenic obesity QTL 6 (mouse)Not determined285893925181254801Mouse
1301834Bits1_mbitterness sensitivity 1 (mouse)Not determined287610298121610433Mouse
11532731Sluc31a_msusceptibility to lung cancer 31a (mouse)288184658122184825Mouse
4142223Femwf4_mfemur work to failure 4 (mouse)Not determined88313078122313225Mouse
1301098Cd8mts3_mCD8 memory T cell subset 3 (mouse)Not determined291259629125259759Mouse
1301909Smdq2_msegregation of mitochondrial DNA QTL 2 (mouse)Not determined292948120126948262Mouse
27226761Feml18_mfemur length 18, 16 week (mouse)294400000154400000Mouse
11049568Lmr28c_mleishmaniasis resistance 28c (mouse)297292889131293051Mouse
11049569Lmr28d_mleishmaniasis resistance 28d (mouse)297292889131293051Mouse
12904935Edlmmq2_mextensor digitorum longus muscle mass QTL 2 (mouse)297379883131379883Mouse
12904954Gmmq2_mgastrocnemius muscle mass QTL 2 (mouse)297379883131379883Mouse
4141802Ignpq1_mIgA nephropathy QTL 1 (mouse)Not determined2100993579134993788Mouse
1301330Tbbmd2_mtotal body bone mineral density 2 (mouse)Not determined2101112449135112609Mouse
1302203Gvhd3_mgraft-versus host disease 3 (mouse)Not determined2101112449135112609Mouse
1302071Fembrs1_mfemur breaking strength 1 (mouse)Not determined2101112449135112609Mouse
27226788Feml13_mfemur length 13, 10 week (mouse)2102800000160100000Mouse
11041906Lmr28a_mleishmaniasis resistance 28a (mouse)2103265371129371085Mouse
11038702Ltpr2_mLeishmania tropica response 2 (mouse)2103265371167370436Mouse
1301825Pbrgcsf1_mperipheral blood stem cell response to granulocyte colony stimulating factor 1 (mouse)Not determined2106391660140391809Mouse
10043875Bw25_mbody weight QTL 25 (mouse)Not determined2107413756141413756Mouse
1301087Bbaa15_mB.burgdorferi-associated arthritis 15 (mouse)Not determined2110647738144647887Mouse
10045885Cplaq15_mcircadian period of locomotor activity 15 (mouse)Not determined2111085773154512747Mouse
1300793Pcfm2_mperiosteal circumference and femur length 2 (mouse)Not determined2111331784145331901Mouse
1301755Hrq1_mheart rate quantitative locus 1 (mouse)Not determined2111331784145331901Mouse
1301905Lgth2_mbody length 2 (mouse)Not determined2111331784145331901Mouse
1558990Skmw9_mskeletal muscle weight 9 (mouse)Not determined2111331784145331901Mouse
1301201Chab1_mcholesterol absorption 1 (mouse)Not determined2111709108145709243Mouse
1302033Nsv1_mNeuroadapted Sindbis viral RNA level 1 (mouse)Not determined2111781466145781606Mouse
1300798Actre3_mactivity response to ethanol 3 (mouse)Not determined2112194642128331901Mouse
1301415Actre4_mactivity response to ethanol 4 (mouse)Not determined2112194642128331901Mouse
11038699Ltpr2b_mLeishmania tropica response 2b (mouse)2112370826146371085Mouse
11038700Ltpr2a_mLeishmania tropica response 2a (mouse)2112370826146371085Mouse
11039520Ltpr2h_mLeishmania tropica response 2h (mouse)2112370826146371085Mouse
1301029T2dm3_mtype 2 diabetes mellitus 3 (mouse)Not determined2114457594132872237Mouse
11038696Ltpr2f_mLeishmania tropica response 2f (mouse)2115370937149371074Mouse
11039521Ltpr2g_mLeishmania tropica response 2g (mouse)2115370937149371074Mouse
13506762Tbvq2_mtrabecular bone volume QTL 2 (mouse)2115600000124900000Mouse
1558825Aabpr_maberrant activation of B cell proliferation (mouse)Not determined2116202748122377053Mouse
1301295Prdt1_mprion disease incubation time 1 (mouse)Not determined2116235703150235821Mouse
1558881Ses7_msalmonella enteritidis susceptibility 7 (mouse)Not determined2116464410150464554Mouse
1301618Bglu1_mblood glucose level 1 (mouse)Not determined2118112449174483070Mouse
12904007Cfq7_mconditioned fear QTL 7 (mouse)2118526291125206952Mouse
12910795Pwbwq5_mpost-weaning body weight QTL 5 (mouse)2118758772160769245Mouse
12910799Pwgrq2_mpre-weaning growth rate QTL 2 (mouse)2118758772160769245Mouse
12910812Pwgrq1_mpre-weaning growth rate QTL 1 (mouse)2118758772160769245Mouse
12910814Pwbwq1_mpre-weaning body weight QTL 1 (mouse)2118758772160769245Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:800
Count of miRNA genes:480
Interacting mature miRNAs:581
Transcripts:ENSMUST00000038073, ENSMUST00000123982, ENSMUST00000146521, ENSMUST00000154604
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_153075 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006499081 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006499082 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006499084 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011239413 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011239414 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017316898 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030249227 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030249229 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030249233 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030249234 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036160226 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AF411816 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK142380 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL845466 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC034181 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC132140 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466519 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000038073   ⟹   ENSMUSP00000037222
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl2121,394,355 - 121,413,792 (-)Ensembl
RefSeq Acc Id: ENSMUST00000123982
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl2121,410,226 - 121,412,290 (-)Ensembl
RefSeq Acc Id: ENSMUST00000146521
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl2121,394,357 - 121,397,455 (-)Ensembl
RefSeq Acc Id: ENSMUST00000154604   ⟹   ENSMUSP00000119091
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl2121,392,631 - 121,413,609 (-)Ensembl
RefSeq Acc Id: NM_153075   ⟹   NP_694715
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392121,224,836 - 121,244,273 (-)NCBI
GRCm382121,394,355 - 121,413,792 (-)NCBI
MGSCv372121,220,091 - 121,239,528 (-)RGD
Celera2122,544,956 - 122,564,491 (-)RGD
cM Map2 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006499081   ⟹   XP_006499144
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392121,222,109 - 121,245,082 (-)NCBI
GRCm382121,391,633 - 121,414,598 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006499082   ⟹   XP_006499145
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392121,222,109 - 121,243,983 (-)NCBI
GRCm382121,391,633 - 121,413,502 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006499084   ⟹   XP_006499147
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392121,222,109 - 121,243,986 (-)NCBI
GRCm382121,391,633 - 121,413,505 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011239413   ⟹   XP_011237715
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392121,222,109 - 121,244,273 (-)NCBI
GRCm382121,391,633 - 121,413,792 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011239414   ⟹   XP_011237716
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392121,228,292 - 121,244,110 (-)NCBI
GRCm382121,397,811 - 121,413,505 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017316898   ⟹   XP_017172387
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392121,228,292 - 121,244,110 (-)NCBI
GRCm382121,397,811 - 121,413,505 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030249227   ⟹   XP_030105087
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392121,222,109 - 121,244,606 (-)NCBI
GRCm382121,391,633 - 121,414,127 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030249229   ⟹   XP_030105089
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392121,222,109 - 121,245,080 (-)NCBI
GRCm382121,391,633 - 121,414,597 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030249233   ⟹   XP_030105093
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392121,222,109 - 121,243,986 (-)NCBI
GRCm382121,391,633 - 121,413,505 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030249234   ⟹   XP_030105094
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392121,222,109 - 121,244,110 (-)NCBI
GRCm382121,391,634 - 121,413,505 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036160226   ⟹   XP_036016119
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392121,222,109 - 121,240,687 (-)NCBI
Reference Sequences
RefSeq Acc Id: NP_694715   ⟸   NM_153075
- UniProtKB: A0A0A0MQ85 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006499144   ⟸   XM_006499081
- Peptide Label: isoform X1
- UniProtKB: A0A0A0MQ85 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006499145   ⟸   XM_006499082
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_006499147   ⟸   XM_006499084
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_011237715   ⟸   XM_011239413
- Peptide Label: isoform X1
- UniProtKB: A0A0A0MQ85 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011237716   ⟸   XM_011239414
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_017172387   ⟸   XM_017316898
- Peptide Label: isoform X7
- Sequence:
RefSeq Acc Id: XP_030105089   ⟸   XM_030249229
- Peptide Label: isoform X3
RefSeq Acc Id: XP_030105087   ⟸   XM_030249227
- Peptide Label: isoform X3
RefSeq Acc Id: XP_030105093   ⟸   XM_030249233
- Peptide Label: isoform X6
RefSeq Acc Id: XP_030105094   ⟸   XM_030249234
- Peptide Label: isoform X7
RefSeq Acc Id: ENSMUSP00000119091   ⟸   ENSMUST00000154604
RefSeq Acc Id: ENSMUSP00000037222   ⟸   ENSMUST00000038073
RefSeq Acc Id: XP_036016119   ⟸   XM_036160226
- Peptide Label: isoform X6
Protein Domains
Ion_trans

Promoters
RGD ID:6830964
Promoter ID:MM_KWN:31412
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day2
Transcripts:OTTMUST00000044909
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv362121,238,636 - 121,239,136 (-)MPROMDB
RGD ID:6830962
Promoter ID:MM_KWN:31413
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   MEF_B4,   MEF_B6
Transcripts:ENSMUST00000038073,   ENSMUST00000099478,   OTTMUST00000036171,   UC008LZA.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv362121,238,994 - 121,239,494 (-)MPROMDB
RGD ID:6830963
Promoter ID:MM_KWN:31415
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day4,   BoneMarrow_0Hour,   BoneMarrow_4Hour,   ES_Cell,   MEF_B6
Transcripts:OTTMUST00000036172
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv362121,240,226 - 121,241,062 (-)MPROMDB
RGD ID:6878474
Promoter ID:EPDNEW_M2688
Type:initiation region
Name:Catsper2_1
Description:Mus musculus cation channel, sperm associated 2 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm382121,413,798 - 121,413,858EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2387404 AgrOrtholog
Ensembl Genes ENSMUSG00000033486 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000037222 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUSP00000119091 UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000038073 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUST00000154604 UniProtKB/TrEMBL
Gene3D-CATH 1.20.120.350 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro 5peptide_repeat UniProtKB/TrEMBL
  CatSper2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ion_trans_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Volt_channel_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:212670 UniProtKB/TrEMBL
MGD MGI:2387404 ENTREZGENE
NCBI Gene 212670 ENTREZGENE
PANTHER PTHR46923 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Ion_trans UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Pentapeptide UniProtKB/TrEMBL
PhenoGen Catsper2 PhenoGen
UniProt A0A0A0MQ85 ENTREZGENE, UniProtKB/TrEMBL
  A2ARP9 ENTREZGENE, UniProtKB/Swiss-Prot
  D6RCY8_MOUSE UniProtKB/TrEMBL
  Q3UQJ3_MOUSE UniProtKB/TrEMBL
UniProt Secondary A2RSK0 UniProtKB/Swiss-Prot
  Q91ZP5 UniProtKB/Swiss-Prot