Paxip1 (PAX interacting (with transcription-activation domain) protein 1) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Paxip1 (PAX interacting (with transcription-activation domain) protein 1) Mus musculus
Analyze
Symbol: Paxip1
Name: PAX interacting (with transcription-activation domain) protein 1
RGD ID: 1316805
MGI Page MGI
Description: Involved in several processes, including chorion development; positive regulation of macromolecule metabolic process; and vasculogenesis. Acts upstream of or within DNA damage response. Located in nucleus. Part of histone methyltransferase complex. Is expressed in 1st branchial arch mandibular component; 1st branchial arch maxillary component; branchial arch; embryo; and limb. Orthologous to human PAXIP1 (PAX interacting protein 1).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: D5Ertd149; D5Ertd149e; P; PAX transactivation activation domain-interacting protein; Pax transcription activation domain interacting protein; PAX-interacting protein 1; PTIP
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39527,947,044 - 27,999,326 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl527,945,078 - 27,996,689 (-)EnsemblGRCm39 Ensembl
GRCm38527,740,080 - 27,791,672 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl527,740,080 - 27,791,691 (-)EnsemblGRCm38mm10GRCm38
MGSCv37528,067,205 - 28,117,879 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36528,071,452 - 28,122,126 (-)NCBIMGSCv36mm8
Celera525,287,864 - 25,339,859 (-)NCBICelera
Cytogenetic Map5B1NCBI
cM Map513.23NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Ko MS, etal., Development 2000 Apr;127(8):1737-49.
2. MGDs mouse GO annotations MGD data from the GO Consortium
3. MGD IEA MGD IEA
4. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
5. Mouse MP Annotation Import Pipeline RGD automated import pipeline
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
7. The COMPASS family of histone H3K4 methylases: mechanisms of regulation in development and disease pathogenesis. Shilatifard A Annu Rev Biochem. 2012;81:65-95. doi: 10.1146/annurev-biochem-051710-134100.
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10908331   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11217851   PMID:11940591   PMID:12477932   PMID:12520002   PMID:12533789   PMID:12588986  
PMID:12904583   PMID:14610273   PMID:14681479   PMID:15782199   PMID:16024820   PMID:16141072   PMID:16141073   PMID:17429055   PMID:17500065   PMID:17925232   PMID:18353733   PMID:18710940  
PMID:18799693   PMID:19124460   PMID:19229280   PMID:19414588   PMID:19544464   PMID:19583951   PMID:19703992   PMID:20671152   PMID:21060806   PMID:21118569   PMID:21267068   PMID:21282469  
PMID:21552207   PMID:21646717   PMID:21677750   PMID:21873635   PMID:22496869   PMID:22736030   PMID:23063797   PMID:23159437   PMID:23435420   PMID:23508102   PMID:23727112   PMID:24368734  
PMID:25617721   PMID:26001054   PMID:26180087   PMID:26744420   PMID:29078319   PMID:30270123   PMID:30297393   PMID:31220795   PMID:31917689   PMID:32968282   PMID:33993864   PMID:33998601  
PMID:35354042   PMID:36648392   PMID:36924252   PMID:37272101   PMID:39097652  


Genomics

Comparative Map Data
Paxip1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39527,947,044 - 27,999,326 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl527,945,078 - 27,996,689 (-)EnsemblGRCm39 Ensembl
GRCm38527,740,080 - 27,791,672 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl527,740,080 - 27,791,691 (-)EnsemblGRCm38mm10GRCm38
MGSCv37528,067,205 - 28,117,879 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36528,071,452 - 28,122,126 (-)NCBIMGSCv36mm8
Celera525,287,864 - 25,339,859 (-)NCBICelera
Cytogenetic Map5B1NCBI
cM Map513.23NCBI
PAXIP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh387154,943,690 - 155,003,411 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl7154,943,687 - 155,003,124 (-)EnsemblGRCh38hg38GRCh38
GRCh377154,735,400 - 154,794,834 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 367154,366,333 - 154,425,615 (-)NCBINCBI36Build 36hg18NCBI36
Build 347154,173,048 - 154,232,306NCBI
Celera7149,152,557 - 149,211,836 (-)NCBICelera
Cytogenetic Map7q36.2NCBI
HuRef7148,468,426 - 148,527,705 (-)NCBIHuRef
CHM1_17154,743,784 - 154,803,135 (-)NCBICHM1_1
T2T-CHM13v2.07156,118,967 - 156,178,685 (-)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v27153,963,422 - 154,022,702 (-)NCBI
Paxip1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr848,258,930 - 8,310,490 (+)NCBIGRCr8
mRatBN7.247,525,132 - 7,576,659 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl47,525,004 - 7,576,548 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx412,535,163 - 12,586,700 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.048,349,408 - 8,400,945 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.046,695,594 - 6,747,133 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.043,956,931 - 4,008,326 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl43,959,640 - 4,008,326 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.043,996,608 - 4,047,988 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.442,790,532 - 2,839,246 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.142,717,068 - 2,839,242 (+)NCBI
Celera42,704,414 - 2,753,568 (-)NCBICelera
Cytogenetic Map4q11NCBI
Paxip1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554918,177,422 - 8,219,766 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554918,177,422 - 8,219,764 (-)NCBIChiLan1.0ChiLan1.0
PAXIP1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v26191,372,868 - 191,432,198 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1743,383,480 - 43,442,465 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v07146,546,658 - 146,605,912 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.17158,274,193 - 158,329,139 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl7158,276,798 - 158,330,911 (-)Ensemblpanpan1.1panPan2
PAXIP1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11618,066,289 - 18,116,007 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1618,066,246 - 18,112,506 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1618,699,205 - 18,749,159 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01619,794,777 - 19,844,723 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1619,794,777 - 19,844,705 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11618,166,085 - 18,216,026 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01618,746,356 - 18,796,284 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01618,799,076 - 18,849,057 (-)NCBIUU_Cfam_GSD_1.0
Paxip1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244051183,415,214 - 3,463,432 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365279,440,036 - 9,484,245 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365279,440,129 - 9,488,215 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PAXIP1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl183,066,848 - 3,111,240 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1183,066,853 - 3,111,239 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2183,227,951 - 3,250,496 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PAXIP1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.121123,095,968 - 123,156,157 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl21123,095,966 - 123,155,800 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607219,215,604 - 19,275,681 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Paxip1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248002,653,732 - 2,707,161 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248002,653,381 - 2,709,261 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Paxip1
1265 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:537
Count of miRNA genes:411
Interacting mature miRNAs:448
Transcripts:ENSMUST00000002291
Prediction methods:Miranda
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301776Skts3_mskin tumor susceptibility 3 (mouse)Not determined52166729555667403Mouse
1301685Estq2_mestradiol regulated response QTL 2 (mouse)Not determined51563408449634190Mouse
11537367Hmtb11_mhemostasis and thrombosis 11 (mouse)52210082364806579Mouse
4141207Imrfq1_mimmune response to Factor IX QTL 1 (mouse)Not determined5812411742124239Mouse
11537368Hmtb10_mhemostasis and thrombosis 10 (mouse)52210082354500318Mouse
7394748Mom5_mmodifier of Min 5 (mouse)Not determined5884767233475637Mouse
15039371Nmrs21_mNAFLD-associated magnetic resonance shift 21 (mouse)5350482337504823Mouse
1301693Sle6_msystemic lupus erythematosus susceptibility 6 (mouse)Not determined5889069387841837Mouse
1300701Cd8ts1_mCD8 T cell subset 1 (mouse)Not determined52721534861215451Mouse
1357478Kdnw1_mkidney weight 1 (mouse)Not determined5891594940529869Mouse
11341716Rvfs3_mRift Valley fever susceptibility 3 (mouse)526441234138455402Mouse
12904958Gmmq8_mgastrocnemius muscle mass QTL 8 (mouse)5129421124Mouse
14696730Kidlq1_mkidney weight, left QTL 1 (mouse)51356315247563152Mouse
10401122Pgia41_mproteoglycan induced arthritis 41 (mouse)Not determined582314434823280Mouse
1300719Iba5_minduction of brown adipocytes 5 (mouse)Not determined52068699354687134Mouse
1301806Actd2_mactivity-distance traveled 2 (mouse)Not determined5538452039384652Mouse

Markers in Region
RH126292  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38527,740,149 - 27,740,365UniSTSGRCm38
MGSCv37528,066,689 - 28,066,905UniSTSGRCm37
Celera525,287,348 - 25,287,564UniSTS
Cytogenetic Map5A3UniSTS
cM Map511.0UniSTS
Whitehead/MRC_RH5334.23UniSTS


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_018878 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006535758 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030254707 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030254708 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030254709 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036165319 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036165320 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036165321 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC146612 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF104261 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK136986 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK144606 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK148141 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK197074 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK198400 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK205117 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK207107 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK214131 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AW121106 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC066014 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466524 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000002291   ⟹   ENSMUSP00000002291
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl527,945,078 - 27,996,548 (-)Ensembl
GRCm38.p6 Ensembl527,740,080 - 27,791,550 (-)Ensembl
Ensembl Acc Id: ENSMUST00000196605
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl527,988,577 - 27,996,381 (-)Ensembl
GRCm38.p6 Ensembl527,783,579 - 27,791,383 (-)Ensembl
Ensembl Acc Id: ENSMUST00000196641
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl527,964,730 - 27,970,735 (-)Ensembl
GRCm38.p6 Ensembl527,759,732 - 27,765,737 (-)Ensembl
Ensembl Acc Id: ENSMUST00000196734   ⟹   ENSMUSP00000142578
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl527,977,477 - 27,996,393 (-)Ensembl
GRCm38.p6 Ensembl527,772,479 - 27,791,395 (-)Ensembl
Ensembl Acc Id: ENSMUST00000197625
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl527,949,083 - 27,956,293 (-)Ensembl
GRCm38.p6 Ensembl527,744,085 - 27,751,295 (-)Ensembl
Ensembl Acc Id: ENSMUST00000199714
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl527,991,543 - 27,995,371 (-)Ensembl
GRCm38.p6 Ensembl527,786,545 - 27,790,373 (-)Ensembl
Ensembl Acc Id: ENSMUST00000199993
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl527,986,447 - 27,996,689 (-)Ensembl
GRCm38.p6 Ensembl527,781,449 - 27,791,691 (-)Ensembl
RefSeq Acc Id: NM_018878   ⟹   NP_061366
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39527,947,047 - 27,996,391 (-)NCBI
GRCm38527,740,080 - 27,791,550 (-)NCBI
MGSCv37528,067,205 - 28,117,879 (-)RGD
Celera525,287,279 - 25,340,070 (-)NCBI
cM Map5 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006535758   ⟹   XP_006535821
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39527,947,044 - 27,999,326 (-)NCBI
GRCm38527,742,046 - 27,791,672 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030254707   ⟹   XP_030110567
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39527,947,044 - 27,996,119 (-)NCBI
GRCm38527,742,046 - 27,791,130 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030254708   ⟹   XP_030110568
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39527,947,044 - 27,999,326 (-)NCBI
GRCm38527,742,046 - 27,791,671 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030254709   ⟹   XP_030110569
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39527,947,044 - 27,999,326 (-)NCBI
GRCm38527,742,046 - 27,791,671 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036165319   ⟹   XP_036021212
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39527,947,044 - 27,999,326 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036165320   ⟹   XP_036021213
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39527,947,044 - 27,999,326 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036165321   ⟹   XP_036021214
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39527,947,044 - 27,985,277 (-)NCBI
Sequence:
RefSeq Acc Id: NP_061366   ⟸   NM_018878
- UniProtKB: Q9Z0W6 (UniProtKB/Swiss-Prot),   Q6NZQ4 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006535821   ⟸   XM_006535758
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_030110568   ⟸   XM_030254708
- Peptide Label: isoform X2
RefSeq Acc Id: XP_030110569   ⟸   XM_030254709
- Peptide Label: isoform X2
RefSeq Acc Id: XP_030110567   ⟸   XM_030254707
- Peptide Label: isoform X2
Ensembl Acc Id: ENSMUSP00000002291   ⟸   ENSMUST00000002291
Ensembl Acc Id: ENSMUSP00000142578   ⟸   ENSMUST00000196734
RefSeq Acc Id: XP_036021212   ⟸   XM_036165319
- Peptide Label: isoform X2
RefSeq Acc Id: XP_036021213   ⟸   XM_036165320
- Peptide Label: isoform X2
RefSeq Acc Id: XP_036021214   ⟸   XM_036165321
- Peptide Label: isoform X2
Protein Domains
BRCT

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q6NZQ4-F1-model_v2 AlphaFold Q6NZQ4 1-1056 view protein structure

Promoters
RGD ID:6886232
Promoter ID:EPDNEW_M6567
Type:initiation region
Name:Paxip1_1
Description:Mus musculus PAX interacting (with transcription-activation domain)protein 1 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38527,791,628 - 27,791,688EPDNEW
RGD ID:6838003
Promoter ID:MM_KWN:41688
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000002291,   NM_018878
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36528,117,821 - 28,118,407 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1890430 AgrOrtholog
Ensembl Genes ENSMUSG00000002221 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000002291 ENTREZGENE
  ENSMUST00000002291.12 UniProtKB/Swiss-Prot
  ENSMUST00000196734.2 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.10190 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro BRCT_dom UniProtKB/Swiss-Prot
  BRCT_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  DDR_Transcriptional_Reg UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:55982 UniProtKB/Swiss-Prot
MGD MGI:1890430 ENTREZGENE
NCBI Gene 55982 ENTREZGENE
PANTHER PAX TRANSCRIPTION ACTIVATION DOMAIN INTERACTING PROTEIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PAX-INTERACTING PROTEIN 1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam BRCT UniProtKB/Swiss-Prot
  BRCT_2 UniProtKB/Swiss-Prot
  PTCB-BRCT UniProtKB/Swiss-Prot
  RTT107_BRCT_5 UniProtKB/Swiss-Prot
PhenoGen Paxip1 PhenoGen
PROSITE BRCT UniProtKB/Swiss-Prot
SMART BRCT UniProtKB/Swiss-Prot
Superfamily-SCOP SSF52113 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0G2JE02_MOUSE UniProtKB/TrEMBL
  PAXI1_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
  Q9Z0W6 ENTREZGENE
UniProt Secondary Q9Z0W6 UniProtKB/Swiss-Prot