Fam32a (family with sequence similarity 32, member A) - Rat Genome Database
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Gene: Fam32a (family with sequence similarity 32, member A) Mus musculus
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Symbol: Fam32a
Name: family with sequence similarity 32, member A
RGD ID: 1316762
MGI Page MGI
Description: Predicted to be involved in apoptotic process and cell cycle. Predicted to localize to nucleolus and nucleoplasm. Orthologous to human FAM32A (family with sequence similarity 32 member A); INTERACTS WITH 1,2-dimethylhydrazine; carbon nanotube; folic acid.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: 2510049I19Rik; AW822030; hypothetical protein LOC67922; OTAG-12; Otag12; ovarian tumor associated gene 12; ovarian tumor associated gene-12
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39872,973,589 - 72,978,878 (+)NCBIGRCm39mm39
GRCm38872,219,745 - 72,225,034 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl872,219,730 - 72,224,418 (+)EnsemblGRCm38mm10GRCm38
MGSCv37874,743,629 - 74,747,674 (+)NCBIGRCm37mm9NCBIm37
MGSCv36875,148,719 - 75,152,764 (+)NCBImm8
Celera876,576,082 - 76,580,126 (+)NCBICelera
Cytogenetic Map8B3.3NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nucleolus  (IBA,ISO)
nucleoplasm  (ISO)
nucleus  (IEA)

Molecular Function

References

References - curated
1. RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11217851   PMID:11544199   PMID:12466851   PMID:12477932   PMID:15489334   PMID:15782199   PMID:16141072  
PMID:16141073   PMID:21267068   PMID:21339736   PMID:21873635   PMID:30196744  


Genomics

Comparative Map Data
Fam32a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39872,973,589 - 72,978,878 (+)NCBIGRCm39mm39
GRCm38872,219,745 - 72,225,034 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl872,219,730 - 72,224,418 (+)EnsemblGRCm38mm10GRCm38
MGSCv37874,743,629 - 74,747,674 (+)NCBIGRCm37mm9NCBIm37
MGSCv36875,148,719 - 75,152,764 (+)NCBImm8
Celera876,576,082 - 76,580,126 (+)NCBICelera
Cytogenetic Map8B3.3NCBI
FAM32A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1916,185,380 - 16,192,046 (+)EnsemblGRCh38hg38GRCh38
GRCh381916,185,184 - 16,192,046 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh371916,296,235 - 16,302,857 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361916,157,235 - 16,163,857 (+)NCBINCBI36hg18NCBI36
Build 341916,157,234 - 16,163,855NCBI
Celera1916,198,233 - 16,204,860 (+)NCBI
Cytogenetic Map19p13.11NCBI
HuRef1915,867,006 - 15,873,595 (+)NCBIHuRef
CHM1_11916,295,750 - 16,302,420 (+)NCBICHM1_1
Fam32a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.01619,304,522 - 19,308,842 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1619,304,529 - 19,308,842 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01619,164,833 - 19,169,377 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41618,025,468 - 18,029,788 (-)NCBIRGSC3.4rn4RGSC3.4
Celera1617,820,419 - 17,824,739 (-)NCBICelera
Cytogenetic Map16p14NCBI
Fam32a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555241,366,531 - 1,370,400 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555241,366,503 - 1,370,404 (-)NCBIChiLan1.0ChiLan1.0
FAM32A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11916,653,456 - 16,660,106 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1916,653,456 - 16,660,106 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01915,672,703 - 15,679,404 (+)NCBIMhudiblu_PPA_v0panPan3
FAM32A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl348,154,756 - 8,155,645 (+)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2046,292,497 - 46,298,004 (-)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.12046,292,497 - 46,297,991 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Fam32a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_0049365964,350,403 - 4,354,061 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FAM32A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl261,388,639 - 61,394,314 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1261,388,628 - 61,394,251 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2261,020,921 - 61,026,534 (-)NCBISscrofa10.2Sscrofa10.2susScr3
FAM32A
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1614,691,042 - 14,697,657 (+)NCBI
ChlSab1.1 Ensembl614,691,042 - 14,697,665 (+)Ensembl
Fam32a
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046249081,069,576 - 1,072,969 (-)NCBI


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4140967Bmd39_mbone mineral density 39 (mouse)Not determined832016544117238700Mouse
1558875Eae31_mexperimental allergic encephalomyelitis susceptibility 31 (mouse)Not determined834642776114837007Mouse
1301013Capsq4_mcapsaicin sensitivity related QTL 4 (mouse)Not determined83616300092728652Mouse
27226754Femd6_mfemur midshaft diameter 6, 10 week (mouse)837400000109600000Mouse
12904744Carcdq1_mcardiac collagen deposition QTL 1 (mouse)83970925694689598Mouse
1301544Iba3_minduction of brown adipocytes 3 (mouse)Not determined84429488078295025Mouse
1301717Adip4_madiposity 4 (mouse)Not determined84763703081637146Mouse
10766453Char11_mP. chabaudi malaria resistance QTL 11 (mouse)84763703081637146Mouse
1301441Skull11_mskull morphology 11 (mouse)Not determined84773713481737254Mouse
1357715Alaa3_malopecia areata 3 (mouse)Not determined84879293982793021Mouse
14746987Manh64_mmandible shape 64 (mouse)85005330684053306Mouse
14747005Mancz7_mmandible centroid size 7 (mouse)85005330684053306Mouse
14700686Civq3_mcerebral infarct volume QTL 3 (mouse)85188219185882191Mouse
1301506Aevm1_mautoimmune extremity vasculitis in MRL mice 1 (mouse)Not determined85428781788287993Mouse
1301952Im3_mimmunoregulatory 3 (mouse)Not determined85470661488706763Mouse
10412287Carg3_mCandida albicans resistance gene 3 (mouse)Not determined85554502889545028Mouse
11353828Gf7_mgonadal fat pad weight 7 (mouse)85820147992201479Mouse
10043975Obq31_mobesity QTL 31 (mouse)Not determined85840977692409776Mouse
1301688Orch6_mautoimmune orchitis resistance 6 (mouse)Not determined86078685094786976Mouse
4141285Tgq18_mtriglyceride QTL 18 (mouse)Not determined6346010797460107Mouse
4141797Skmw16_mskeletal muscle weight 16 (mouse)Not determined86393954797939696Mouse
1357787Vtbt5_mvertebral trabecular bone trait 5 (mouse)Not determined86535776899357920Mouse
10043992Hbnr11_mHeligmosomoides bakeri nematode resistance 11 (mouse)Not determined86560020799600347Mouse
10766466Char12_mP. chabaudi malaria resistance QTL 12 (mouse)86826982782600347Mouse
1301767Fcsa2_mfemoral cross-sectional area 2 (mouse)Not determined870305375104305495Mouse
4142283Imraq2_mimmune response to AAV2 QTL 2 (mouse)Not determined870305375104305495Mouse
1558780Idd22_minsulin dependent diabetes susceptibility 22 (mouse)Not determined871102903105103009Mouse
4141395Char2a_mP. chabaudi malaria resistance QTL 2a (mouse)Not determined7113678390202598Mouse
4142023W3q5_mweight 3 weeks QTL 5 (mouse)Not determined71287817123895615Mouse
1357708Orq1_movulation rate QTL 1 (mouse)Not determined871287817123895615Mouse
1301872Cd4ts3_mCD4 T cell subset 3 (mouse)Not determined871396181105396393Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:494
Count of miRNA genes:342
Interacting mature miRNAs:383
Transcripts:ENSMUST00000003123
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000003123   ⟹   ENSMUSP00000003123
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl872,219,730 - 72,224,418 (+)Ensembl
RefSeq Acc Id: ENSMUST00000212117
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl872,219,764 - 72,223,430 (+)Ensembl
RefSeq Acc Id: NM_026455   ⟹   NP_080731
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39872,973,589 - 72,978,878 (+)NCBI
GRCm38872,219,745 - 72,225,034 (+)NCBI
MGSCv37874,743,629 - 74,747,674 (+)RGD
Celera876,576,082 - 76,580,126 (+)RGD
cM Map8 ENTREZGENE
Sequence:
Reference Sequences
RefSeq Acc Id: NP_080731   ⟸   NM_026455
- UniProtKB: Q9CR80 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSMUSP00000003123   ⟸   ENSMUST00000003123

Promoters
RGD ID:8667461
Promoter ID:EPDNEW_M11762
Type:initiation region
Name:Fam32a_1
Description:Mus musculus family with sequence similarity 32, member A , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38872,219,746 - 72,219,806EPDNEW
RGD ID:6843126
Promoter ID:MM_KWN:54859
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:NM_026455,   UC009MFO.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36874,742,876 - 74,744,122 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1915172 AgrOrtholog
Ensembl Genes ENSMUSG00000003039 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Protein ENSMUSP00000003123 ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000003123 ENTREZGENE, UniProtKB/Swiss-Prot
InterPro FAM32A UniProtKB/Swiss-Prot
KEGG Report mmu:67922 UniProtKB/Swiss-Prot
MGD MGI:1915172 ENTREZGENE
NCBI Gene 67922 ENTREZGENE
PANTHER PTHR13282 UniProtKB/Swiss-Prot
Pfam DUF1754 UniProtKB/Swiss-Prot
PhenoGen Fam32a PhenoGen
UniGene Mm.28327 ENTREZGENE
UniProt FA32A_MOUSE UniProtKB/Swiss-Prot
  Q78XM1_MOUSE UniProtKB/TrEMBL
  Q9CR80 ENTREZGENE
UniProt Secondary Q8K5E4 UniProtKB/Swiss-Prot