Zfp330 (zinc finger protein 330) - Rat Genome Database
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Gene: Zfp330 (zinc finger protein 330) Mus musculus
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Symbol: Zfp330
Name: zinc finger protein 330
RGD ID: 1316747
MGI Page MGI
Description: Predicted to have zinc ion binding activity. Predicted to localize to chromosome, centromeric region; midbody; and nucleolus. Is expressed in bladder; male associated reproductive structure; testis; ureter; and urethra of male. Orthologous to human ZNF330 (zinc finger protein 330); INTERACTS WITH 1,2-dichloroethane; 1,2-dimethylhydrazine; 17alpha-ethynylestradiol.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: BC008086; MGC103365; MGC41503; MGC6718; No; NOA 36; Noa36; nucleolar autoantigen 36; nucleolar cysteine-rich protein; Znf330
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39883,490,247 - 83,500,774 (-)NCBIGRCm39mm39
GRCm38882,763,618 - 82,774,145 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl882,763,607 - 82,774,160 (-)EnsemblGRCm38mm10GRCm38
MGSCv37885,287,519 - 85,298,025 (-)NCBIGRCm37mm9NCBIm37
MGSCv36885,653,725 - 85,664,231 (-)NCBImm8
Celera887,063,097 - 87,073,634 (-)NCBICelera
Cytogenetic Map8C2NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

Additional References at PubMed
PMID:10349636   PMID:10593942   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12477932   PMID:12904583   PMID:14610273   PMID:15489334   PMID:16141072   PMID:16141073  
PMID:18287559   PMID:21267068   PMID:21873635   PMID:28190767   PMID:32325033  


Genomics

Comparative Map Data
Zfp330
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39883,490,247 - 83,500,774 (-)NCBIGRCm39mm39
GRCm38882,763,618 - 82,774,145 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl882,763,607 - 82,774,160 (-)EnsemblGRCm38mm10GRCm38
MGSCv37885,287,519 - 85,298,025 (-)NCBIGRCm37mm9NCBIm37
MGSCv36885,653,725 - 85,664,231 (-)NCBImm8
Celera887,063,097 - 87,073,634 (-)NCBICelera
Cytogenetic Map8C2NCBI
ZNF330
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl4141,220,887 - 141,234,697 (+)EnsemblGRCh38hg38GRCh38
GRCh384141,220,294 - 141,234,697 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh374142,142,049 - 142,155,851 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 364142,361,547 - 142,375,301 (+)NCBINCBI36hg18NCBI36
Build 344142,499,701 - 142,513,453NCBI
Celera4139,472,797 - 139,486,599 (+)NCBI
Cytogenetic Map4q31.21NCBI
HuRef4137,871,686 - 137,885,488 (+)NCBIHuRef
CHM1_14142,119,439 - 142,133,249 (+)NCBICHM1_1
Zfp330
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.01923,936,522 - 23,946,900 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1923,936,505 - 23,946,900 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01934,916,045 - 34,926,423 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41927,048,575 - 27,059,878 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11927,028,736 - 27,064,683 (+)NCBI
Celera1924,853,332 - 24,864,637 (+)NCBICelera
Cytogenetic Map19q11NCBI
Znf330
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554711,933,451 - 1,947,124 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554711,933,675 - 1,946,572 (-)NCBIChiLan1.0ChiLan1.0
ZNF330
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.14144,883,845 - 144,898,126 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl4144,884,319 - 144,898,126 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v04133,580,533 - 133,594,798 (+)NCBIMhudiblu_PPA_v0panPan3
ZNF330
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl191,731,641 - 1,752,772 (-)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.1191,730,999 - 1,752,877 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Znf330
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_0049365356,744,179 - 6,757,085 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZNF330
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl886,019,115 - 86,036,201 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1886,019,111 - 86,036,738 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2891,327,714 - 91,340,812 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ZNF330
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1 Ensembl788,133,623 - 88,147,303 (+)Ensembl
ChlSab1.1788,133,603 - 88,146,584 (+)NCBI
Znf330
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624853622,392 - 634,696 (+)NCBI


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4140967Bmd39_mbone mineral density 39 (mouse)Not determined832016544117238700Mouse
1558875Eae31_mexperimental allergic encephalomyelitis susceptibility 31 (mouse)Not determined834642776114837007Mouse
1301013Capsq4_mcapsaicin sensitivity related QTL 4 (mouse)Not determined83616300092728652Mouse
27226754Femd6_mfemur midshaft diameter 6, 10 week (mouse)837400000109600000Mouse
12904744Carcdq1_mcardiac collagen deposition QTL 1 (mouse)83970925694689598Mouse
1357715Alaa3_malopecia areata 3 (mouse)Not determined84879293982793021Mouse
14746987Manh64_mmandible shape 64 (mouse)85005330684053306Mouse
14747005Mancz7_mmandible centroid size 7 (mouse)85005330684053306Mouse
14700686Civq3_mcerebral infarct volume QTL 3 (mouse)85188219185882191Mouse
1301506Aevm1_mautoimmune extremity vasculitis in MRL mice 1 (mouse)Not determined85428781788287993Mouse
1301952Im3_mimmunoregulatory 3 (mouse)Not determined85470661488706763Mouse
10412287Carg3_mCandida albicans resistance gene 3 (mouse)Not determined85554502889545028Mouse
11353828Gf7_mgonadal fat pad weight 7 (mouse)85820147992201479Mouse
10043975Obq31_mobesity QTL 31 (mouse)Not determined85840977692409776Mouse
1301688Orch6_mautoimmune orchitis resistance 6 (mouse)Not determined86078685094786976Mouse
4141285Tgq18_mtriglyceride QTL 18 (mouse)Not determined6346010797460107Mouse
4141797Skmw16_mskeletal muscle weight 16 (mouse)Not determined86393954797939696Mouse
1357787Vtbt5_mvertebral trabecular bone trait 5 (mouse)Not determined86535776899357920Mouse
10043992Hbnr11_mHeligmosomoides bakeri nematode resistance 11 (mouse)Not determined86560020799600347Mouse
1301767Fcsa2_mfemoral cross-sectional area 2 (mouse)Not determined870305375104305495Mouse
4142283Imraq2_mimmune response to AAV2 QTL 2 (mouse)Not determined870305375104305495Mouse
1558780Idd22_minsulin dependent diabetes susceptibility 22 (mouse)Not determined871102903105103009Mouse
4141395Char2a_mP. chabaudi malaria resistance QTL 2a (mouse)Not determined7113678390202598Mouse
4142023W3q5_mweight 3 weeks QTL 5 (mouse)Not determined71287817123895615Mouse
1357708Orq1_movulation rate QTL 1 (mouse)Not determined871287817123895615Mouse
1301872Cd4ts3_mCD4 T cell subset 3 (mouse)Not determined871396181105396393Mouse
1300920Pitm3_mprion incubation time 3 (mouse)Not determined873202495107202598Mouse
27095912Pglq14_mpelvic girdle length QTL 14, 16 week (mouse)873400000126100000Mouse
1558890Lith18_mlithogenic gene 18 (mouse)Not determined875675517109675623Mouse
1357470Obq16_mobesity QTL 16 (mouse)Not determined875685348109685497Mouse
1301808Nhdlq1_mnon-HDL QTL 1 (mouse)Not determined875685348109685497Mouse
1301874Hdlq16_mHDL QTL 16 (mouse)Not determined875685348109685497Mouse
10412234Nhdlq14_mnon-HDL QTL 14 (mouse)Not determined875685348109685497Mouse
1301099Cbm2_mcerebellum weight 2 (mouse)Not determined878518613112518703Mouse
1301581Char2_mP. chabaudi malaria resistance QTL 2 (mouse)Not determined879082178113082403Mouse
12904012Cfq10_mconditioned fear QTL 10 (mouse)88006677589014359Mouse
10755530Wbc2_mwhite blood cell count 2 (mouse)881092664115092664Mouse
10755519Wbc1_mwhite blood cell count 1 (mouse)881619151115619151Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:165
Count of miRNA genes:151
Interacting mature miRNAs:158
Transcripts:ENSMUST00000034147
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000034147   ⟹   ENSMUSP00000034147
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl882,763,621 - 82,774,160 (-)Ensembl
RefSeq Acc Id: ENSMUST00000209587
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl882,764,510 - 82,769,472 (-)Ensembl
RefSeq Acc Id: ENSMUST00000209601
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl882,763,621 - 82,771,039 (-)Ensembl
RefSeq Acc Id: ENSMUST00000209727
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl882,764,372 - 82,767,537 (-)Ensembl
RefSeq Acc Id: ENSMUST00000210958
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl882,772,644 - 82,774,145 (-)Ensembl
RefSeq Acc Id: ENSMUST00000211451
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl882,763,607 - 82,769,973 (-)Ensembl
RefSeq Acc Id: ENSMUST00000211462   ⟹   ENSMUSP00000147955
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl882,764,398 - 82,774,114 (-)Ensembl
RefSeq Acc Id: NM_001368343   ⟹   NP_001355272
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39883,490,247 - 83,500,774 (-)NCBI
GRCm38882,763,618 - 82,774,145 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001368344   ⟹   NP_001355273
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39883,490,247 - 83,500,774 (-)NCBI
GRCm38882,763,618 - 82,774,145 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001368345   ⟹   NP_001355274
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39883,490,247 - 83,500,774 (-)NCBI
GRCm38882,763,618 - 82,774,145 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001368346   ⟹   NP_001355275
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39883,490,247 - 83,500,774 (-)NCBI
GRCm38882,763,618 - 82,774,145 (-)NCBI
Sequence:
RefSeq Acc Id: NM_145600   ⟹   NP_663575
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39883,490,247 - 83,500,774 (-)NCBI
GRCm38882,763,618 - 82,774,145 (-)NCBI
MGSCv37885,287,519 - 85,298,025 (-)RGD
Celera887,063,097 - 87,073,634 (-)RGD
cM Map8 ENTREZGENE
Sequence:
Reference Sequences
RefSeq Acc Id: NP_663575   ⟸   NM_145600
- Peptide Label: isoform 1
- UniProtKB: Q922H9 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001355275   ⟸   NM_001368346
- Peptide Label: isoform 5
RefSeq Acc Id: NP_001355273   ⟸   NM_001368344
- Peptide Label: isoform 3
RefSeq Acc Id: NP_001355274   ⟸   NM_001368345
- Peptide Label: isoform 4
RefSeq Acc Id: NP_001355272   ⟸   NM_001368343
- Peptide Label: isoform 2
RefSeq Acc Id: ENSMUSP00000034147   ⟸   ENSMUST00000034147
RefSeq Acc Id: ENSMUSP00000147955   ⟸   ENSMUST00000211462

Promoters
RGD ID:8667613
Promoter ID:EPDNEW_M11823
Type:initiation region
Name:Zfp330_1
Description:Mus musculus zinc finger protein 330 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38882,774,145 - 82,774,205EPDNEW
RGD ID:6843910
Promoter ID:MM_KWN:54985
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000034147,   ENSMUST00000086864
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36885,297,819 - 85,298,319 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1353574 AgrOrtholog
Ensembl Genes ENSMUSG00000031711 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000034147 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000147955 UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000034147 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000211462 UniProtKB/TrEMBL
InterPro NOA36 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:30932 UniProtKB/Swiss-Prot
MGD MGI:1353574 ENTREZGENE
NCBI Gene 30932 ENTREZGENE
PANTHER PTHR13214 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam NOA36 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Zfp330 PhenoGen
UniGene Mm.269248 ENTREZGENE
UniProt A0A1B0GSJ0_MOUSE UniProtKB/TrEMBL
  Q922H9 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary Q8C389 UniProtKB/Swiss-Prot
  Q8K2M4 UniProtKB/Swiss-Prot