WDR89 (WD repeat domain 89) - Rat Genome Database

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Gene: WDR89 (WD repeat domain 89) Homo sapiens
Analyze
Symbol: WDR89
Name: WD repeat domain 89
RGD ID: 1316567
HGNC Page HGNC:20489
Description: Predicted to act upstream of or within corpus callosum development and ventricular system development; INTERACTS WITH 17beta-estradiol; all-trans-retinoic acid; aristolochic acid A.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: C14orf150; MGC9907; MSTP050; WD repeat-containing protein 89
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Related Pseudogenes: LOC100130487  
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381463,597,039 - 63,641,871 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1463,597,039 - 63,641,871 (-)EnsemblGRCh38hg38GRCh38
GRCh371464,063,757 - 64,108,589 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361463,133,510 - 63,178,344 (-)NCBINCBI36Build 36hg18NCBI36
Build 341463,133,510 - 63,178,344NCBI
Celera1444,114,416 - 44,159,247 (-)NCBICelera
Cytogenetic Map14q23.2NCBI
HuRef1444,230,434 - 44,274,975 (-)NCBIHuRef
CHM1_11464,002,766 - 64,047,647 (-)NCBICHM1_1
T2T-CHM13v2.01457,804,429 - 57,849,265 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:14702039   PMID:15342556   PMID:15489334   PMID:15635413   PMID:16169070   PMID:16344560   PMID:17207965   PMID:18029348   PMID:21832049   PMID:21988832   PMID:26186194  
PMID:26344197   PMID:26673895   PMID:28514442   PMID:29509190   PMID:30804502   PMID:31048545   PMID:31091453   PMID:31527615   PMID:33060197   PMID:33961781   PMID:36604567  


Genomics

Comparative Map Data
WDR89
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381463,597,039 - 63,641,871 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1463,597,039 - 63,641,871 (-)EnsemblGRCh38hg38GRCh38
GRCh371464,063,757 - 64,108,589 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361463,133,510 - 63,178,344 (-)NCBINCBI36Build 36hg18NCBI36
Build 341463,133,510 - 63,178,344NCBI
Celera1444,114,416 - 44,159,247 (-)NCBICelera
Cytogenetic Map14q23.2NCBI
HuRef1444,230,434 - 44,274,975 (-)NCBIHuRef
CHM1_11464,002,766 - 64,047,647 (-)NCBICHM1_1
T2T-CHM13v2.01457,804,429 - 57,849,265 (-)NCBIT2T-CHM13v2.0
Wdr89
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391275,677,368 - 75,716,311 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1275,677,370 - 75,716,311 (-)EnsemblGRCm39 Ensembl
GRCm381275,630,594 - 75,669,537 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1275,630,596 - 75,669,537 (-)EnsemblGRCm38mm10GRCm38
MGSCv371276,731,581 - 76,770,524 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361276,549,434 - 76,588,371 (-)NCBIMGSCv36mm8
Celera1276,730,938 - 76,769,912 (-)NCBICelera
Cytogenetic Map12C3NCBI
cM Map1232.89NCBI
Wdr89
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr86100,086,169 - 100,117,796 (-)NCBIGRCr8
mRatBN7.2694,350,468 - 94,382,085 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl694,350,303 - 94,382,026 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx694,744,029 - 94,750,406 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0695,042,501 - 95,048,878 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0694,471,408 - 94,477,785 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0698,599,456 - 98,631,512 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl698,599,723 - 98,606,109 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.06108,017,409 - 108,049,159 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4698,231,300 - 98,237,690 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1698,234,755 - 98,241,146 (-)NCBI
Celera692,776,713 - 92,783,104 (-)NCBICelera
Cytogenetic Map6q24NCBI
Wdr89
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554666,203,391 - 6,204,548 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554666,171,553 - 6,204,818 (+)NCBIChiLan1.0ChiLan1.0
WDR89
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21564,701,695 - 64,750,622 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11463,918,210 - 63,967,136 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01444,170,527 - 44,220,090 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11462,427,017 - 62,476,018 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1462,428,742 - 62,429,905 (-)Ensemblpanpan1.1panPan2
WDR89
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1838,121,649 - 38,157,178 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl838,121,798 - 38,122,961 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha837,813,659 - 37,849,642 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0838,347,261 - 38,383,287 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl838,344,532 - 38,383,145 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1837,964,309 - 38,000,279 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0838,036,906 - 38,073,061 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0838,397,091 - 38,433,470 (-)NCBIUU_Cfam_GSD_1.0
Wdr89
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864066,684,354 - 66,774,095 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364957,417,154 - 7,528,526 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364957,417,604 - 7,452,601 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
WDR89
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1194,439,820 - 194,475,872 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11194,439,825 - 194,475,876 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21216,445,622 - 216,461,215 (-)NCBISscrofa10.2Sscrofa10.2susScr3
WDR89
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12440,793,441 - 40,835,582 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605328,965,931 - 29,031,900 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Wdr89
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473437,419,141 - 37,420,316 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473437,384,138 - 37,420,878 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in WDR89
33 total Variants

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 14q23.1-23.3(chr14:59917051-66750803)x1 copy number loss See cases [RCV000050892] Chr14:59917051..66750803 [GRCh38]
Chr14:60383769..67217521 [GRCh37]
Chr14:59453522..66287274 [NCBI36]
Chr14:14q23.1-23.3
pathogenic
GRCh38/hg38 14q22.3-23.3(chr14:57041036-67208231)x1 copy number loss See cases [RCV000051521] Chr14:57041036..67208231 [GRCh38]
Chr14:57507754..67674948 [GRCh37]
Chr14:56577507..66744701 [NCBI36]
Chr14:14q22.3-23.3
pathogenic
GRCh38/hg38 14q11.2-32.33(chr14:20151149-106855263)x3 copy number gain See cases [RCV000135543] Chr14:20151149..106855263 [GRCh38]
Chr14:20619308..107263478 [GRCh37]
Chr14:19689148..106334523 [NCBI36]
Chr14:14q11.2-32.33
pathogenic
GRCh38/hg38 14q23.2(chr14:63153722-64093651)x3 copy number gain See cases [RCV000138644] Chr14:63153722..64093651 [GRCh38]
Chr14:63620440..64560369 [GRCh37]
Chr14:62690193..63630122 [NCBI36]
Chr14:14q23.2
uncertain significance
GRCh38/hg38 14q23.1-23.2(chr14:57653413-64093528)x1 copy number loss See cases [RCV000138348] Chr14:57653413..64093528 [GRCh38]
Chr14:58120131..64560246 [GRCh37]
Chr14:57189884..63629999 [NCBI36]
Chr14:14q23.1-23.2
pathogenic
GRCh38/hg38 14q23.2-23.3(chr14:62252700-65753416)x1 copy number loss See cases [RCV000138250] Chr14:62252700..65753416 [GRCh38]
Chr14:62719418..66220134 [GRCh37]
Chr14:61789171..65289887 [NCBI36]
Chr14:14q23.2-23.3
pathogenic
GRCh38/hg38 14q11.2-32.33(chr14:20043514-106877229)x3 copy number gain See cases [RCV000143373] Chr14:20043514..106877229 [GRCh38]
Chr14:20511673..107285437 [GRCh37]
Chr14:19581513..106356482 [NCBI36]
Chr14:14q11.2-32.33
pathogenic
NM_080666.4(WDR89):c.151T>C (p.Ser51Pro) single nucleotide variant Inborn genetic diseases [RCV003242821] Chr14:63599792 [GRCh38]
Chr14:64066510 [GRCh37]
Chr14:14q23.2
uncertain significance
GRCh37/hg19 14q11.2-32.33(chr14:19794561-107234280)x3 copy number gain See cases [RCV000446256] Chr14:19794561..107234280 [GRCh37]
Chr14:14q11.2-32.33
pathogenic
GRCh37/hg19 14q23.2-32.33(chr14:62493932-107285437)x3 copy number gain See cases [RCV000448557] Chr14:62493932..107285437 [GRCh37]
Chr14:14q23.2-32.33
pathogenic
GRCh37/hg19 14q11.2-32.33(chr14:20511673-107285437) copy number gain See cases [RCV000512041] Chr14:20511673..107285437 [GRCh37]
Chr14:14q11.2-32.33
pathogenic
NM_080666.4(WDR89):c.1061A>G (p.Glu354Gly) single nucleotide variant Inborn genetic diseases [RCV003239393] Chr14:63598882 [GRCh38]
Chr14:64065600 [GRCh37]
Chr14:14q23.2
uncertain significance
GRCh37/hg19 14q11.1-32.33(chr14:19000422-107289053)x3 copy number gain not provided [RCV000738412] Chr14:19000422..107289053 [GRCh37]
Chr14:14q11.1-32.33
pathogenic
GRCh37/hg19 14q11.2-32.33(chr14:19280733-107287663)x3 copy number gain not provided [RCV000738413] Chr14:19280733..107287663 [GRCh37]
Chr14:14q11.2-32.33
pathogenic
GRCh37/hg19 14q11.2-32.33(chr14:19327823-107287663)x3 copy number gain not provided [RCV000738414] Chr14:19327823..107287663 [GRCh37]
Chr14:14q11.2-32.33
pathogenic
GRCh37/hg19 14q23.2(chr14:63911105-64263364)x1 copy number loss not provided [RCV000751038] Chr14:63911105..64263364 [GRCh37]
Chr14:14q23.2
benign
GRCh37/hg19 14q23.2(chr14:63916963-64263364)x1 copy number loss not provided [RCV000751039] Chr14:63916963..64263364 [GRCh37]
Chr14:14q23.2
benign
NM_080666.4(WDR89):c.857C>G (p.Thr286Arg) single nucleotide variant Inborn genetic diseases [RCV003271263] Chr14:63599086 [GRCh38]
Chr14:64065804 [GRCh37]
Chr14:14q23.2
uncertain significance
NM_080666.4(WDR89):c.824A>G (p.Asp275Gly) single nucleotide variant Inborn genetic diseases [RCV003249589] Chr14:63599119 [GRCh38]
Chr14:64065837 [GRCh37]
Chr14:14q23.2
uncertain significance
GRCh37/hg19 14q23.1-23.3(chr14:61409856-65742610)x3 copy number gain not provided [RCV001259780] Chr14:61409856..65742610 [GRCh37]
Chr14:14q23.1-23.3
likely pathogenic
GRCh37/hg19 14q23.2-23.3(chr14:64016496-65834490)x3 copy number gain See cases [RCV002285053] Chr14:64016496..65834490 [GRCh37]
Chr14:14q23.2-23.3
uncertain significance
GRCh37/hg19 14q22.2-24.3(chr14:54654001-75828024)x3 copy number gain 14q22.2q24.3 duplication [RCV001506967] Chr14:54654001..75828024 [GRCh37]
Chr14:14q22.2-24.3
likely pathogenic
NM_080666.4(WDR89):c.967A>G (p.Thr323Ala) single nucleotide variant Inborn genetic diseases [RCV003277445] Chr14:63598976 [GRCh38]
Chr14:64065694 [GRCh37]
Chr14:14q23.2
uncertain significance
GRCh37/hg19 14q13.3-32.33(chr14:37671058-106985955)x2 copy number gain See cases [RCV002286356] Chr14:37671058..106985955 [GRCh37]
Chr14:14q13.3-32.33
pathogenic
NM_080666.4(WDR89):c.346A>G (p.Asn116Asp) single nucleotide variant Inborn genetic diseases [RCV003262641] Chr14:63599597 [GRCh38]
Chr14:64066315 [GRCh37]
Chr14:14q23.2
uncertain significance
NM_080666.4(WDR89):c.707C>T (p.Thr236Ile) single nucleotide variant Inborn genetic diseases [RCV002660199] Chr14:63599236 [GRCh38]
Chr14:64065954 [GRCh37]
Chr14:14q23.2
uncertain significance
NM_080666.4(WDR89):c.595G>A (p.Asp199Asn) single nucleotide variant Inborn genetic diseases [RCV002745100] Chr14:63599348 [GRCh38]
Chr14:64066066 [GRCh37]
Chr14:14q23.2
uncertain significance
NM_080666.4(WDR89):c.1105G>A (p.Val369Met) single nucleotide variant Inborn genetic diseases [RCV002792463] Chr14:63598838 [GRCh38]
Chr14:64065556 [GRCh37]
Chr14:14q23.2
uncertain significance
NM_080666.4(WDR89):c.408A>T (p.Lys136Asn) single nucleotide variant Inborn genetic diseases [RCV002769871] Chr14:63599535 [GRCh38]
Chr14:64066253 [GRCh37]
Chr14:14q23.2
uncertain significance
NM_080666.4(WDR89):c.431T>G (p.Val144Gly) single nucleotide variant Inborn genetic diseases [RCV002961845] Chr14:63599512 [GRCh38]
Chr14:64066230 [GRCh37]
Chr14:14q23.2
uncertain significance
NM_080666.4(WDR89):c.113G>T (p.Gly38Val) single nucleotide variant Inborn genetic diseases [RCV003201070] Chr14:63599830 [GRCh38]
Chr14:64066548 [GRCh37]
Chr14:14q23.2
uncertain significance
NM_080666.4(WDR89):c.488G>T (p.Gly163Val) single nucleotide variant Inborn genetic diseases [RCV003305357] Chr14:63599455 [GRCh38]
Chr14:64066173 [GRCh37]
Chr14:14q23.2
uncertain significance
NM_080666.4(WDR89):c.307A>G (p.Arg103Gly) single nucleotide variant Inborn genetic diseases [RCV003371137] Chr14:63599636 [GRCh38]
Chr14:64066354 [GRCh37]
Chr14:14q23.2
uncertain significance
GRCh37/hg19 14q22.3-23.2(chr14:55667390-64447598)x1 copy number loss not provided [RCV003483204] Chr14:55667390..64447598 [GRCh37]
Chr14:14q22.3-23.2
pathogenic
GRCh37/hg19 14q23.1-32.33(chr14:58894502-107227240)x3 copy number gain not provided [RCV003485036] Chr14:58894502..107227240 [GRCh37]
Chr14:14q23.1-32.33
pathogenic
GRCh37/hg19 14q22.3-24.1(chr14:57588965-68334517)x3 copy number gain not provided [RCV003485034] Chr14:57588965..68334517 [GRCh37]
Chr14:14q22.3-24.1
likely pathogenic
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1222
Count of miRNA genes:476
Interacting mature miRNAs:523
Transcripts:ENST00000267522, ENST00000394942, ENST00000554717
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Markers in Region
D14S1001  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371464,093,810 - 64,093,980UniSTSGRCh37
Build 361463,163,563 - 63,163,733RGDNCBI36
Celera1444,144,468 - 44,144,636RGD
Cytogenetic Map14q23.2UniSTS
HuRef1444,260,063 - 44,260,235UniSTS
Marshfield Genetic Map1469.18RGD
Marshfield Genetic Map1469.18UniSTS
Genethon Genetic Map1459.0UniSTS
Whitehead-YAC Contig Map14 UniSTS
SHGC-36643  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371464,065,334 - 64,065,410UniSTSGRCh37
Build 361463,135,087 - 63,135,163RGDNCBI36
Celera1444,115,993 - 44,116,069RGD
Cytogenetic Map14q23.2UniSTS
HuRef1444,232,011 - 44,232,087UniSTS
GeneMap99-G3 RH Map142155.0UniSTS
SHGC-30609  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371464,063,783 - 64,063,907UniSTSGRCh37
Build 361463,133,536 - 63,133,660RGDNCBI36
Celera1444,114,442 - 44,114,566RGD
Cytogenetic Map14q23.2UniSTS
HuRef1444,230,460 - 44,230,584UniSTS
TNG Radiation Hybrid Map1420593.0UniSTS
Stanford-G3 RH Map142128.0UniSTS
GeneMap99-GB4 RH Map14151.84UniSTS
Whitehead-RH Map14220.7UniSTS
NCBI RH Map14647.8UniSTS
GeneMap99-G3 RH Map142176.0UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system visual system adipose tissue appendage entire extraembryonic component pharyngeal arch
High
Medium 165 32 201 77 766 82 407 58 251 193 323 404 8 43 97 3
Low 2274 2755 1525 547 1007 383 3950 2113 3479 226 1137 1209 166 1 1160 2691 3 2
Below cutoff 204 178 26 4 1

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001008726 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001258272 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001382423 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001382424 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001382425 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001382426 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001382427 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001382428 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001382429 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_080666 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011536383 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054375310 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AF115513 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK095324 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL136038 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC010698 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BI603622 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BP278550 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BX248008 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471061 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CP068264 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DA882425 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DB178690 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENST00000267522   ⟹   ENSP00000267522
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1463,598,502 - 63,641,407 (-)Ensembl
RefSeq Acc Id: ENST00000394942   ⟹   ENSP00000378399
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1463,597,039 - 63,641,861 (-)Ensembl
RefSeq Acc Id: ENST00000554717   ⟹   ENSP00000451702
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1463,599,263 - 63,641,853 (-)Ensembl
RefSeq Acc Id: ENST00000620954   ⟹   ENSP00000480112
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1463,597,039 - 63,641,871 (-)Ensembl
RefSeq Acc Id: NM_001008726   ⟹   NP_001008726
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381463,597,039 - 63,641,871 (-)NCBI
GRCh371464,063,757 - 64,108,641 (-)NCBI
Build 361463,133,510 - 63,177,878 (-)NCBI Archive
Celera1444,114,416 - 44,159,247 (-)RGD
HuRef1444,230,434 - 44,274,975 (-)NCBI
CHM1_11464,002,766 - 64,047,647 (-)NCBI
T2T-CHM13v2.01457,804,429 - 57,849,265 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001258272   ⟹   NP_001245201
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381463,597,039 - 63,641,871 (-)NCBI
GRCh371464,063,757 - 64,108,641 (-)NCBI
HuRef1444,230,434 - 44,274,975 (-)NCBI
CHM1_11464,002,766 - 64,047,647 (-)NCBI
T2T-CHM13v2.01457,804,429 - 57,849,265 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001382423   ⟹   NP_001369352
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381463,597,039 - 63,641,871 (-)NCBI
T2T-CHM13v2.01457,804,429 - 57,849,265 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001382424   ⟹   NP_001369353
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381463,597,039 - 63,641,871 (-)NCBI
T2T-CHM13v2.01457,804,429 - 57,849,265 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001382425   ⟹   NP_001369354
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381463,597,039 - 63,641,871 (-)NCBI
T2T-CHM13v2.01457,804,429 - 57,849,265 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001382426   ⟹   NP_001369355
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381463,597,039 - 63,641,871 (-)NCBI
T2T-CHM13v2.01457,804,429 - 57,849,265 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001382427   ⟹   NP_001369356
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381463,597,039 - 63,641,871 (-)NCBI
T2T-CHM13v2.01457,804,429 - 57,849,265 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001382428   ⟹   NP_001369357
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381463,597,039 - 63,641,871 (-)NCBI
T2T-CHM13v2.01457,804,429 - 57,849,265 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001382429   ⟹   NP_001369358
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381463,597,039 - 63,641,871 (-)NCBI
T2T-CHM13v2.01457,804,429 - 57,849,265 (-)NCBI
Sequence:
RefSeq Acc Id: NM_080666   ⟹   NP_542397
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381463,597,039 - 63,641,871 (-)NCBI
GRCh371464,063,757 - 64,108,641 (-)NCBI
Build 361463,133,510 - 63,178,344 (-)NCBI Archive
Celera1444,114,416 - 44,159,247 (-)RGD
HuRef1444,230,434 - 44,274,975 (-)NCBI
CHM1_11464,002,766 - 64,047,647 (-)NCBI
T2T-CHM13v2.01457,804,429 - 57,849,265 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011536383   ⟹   XP_011534685
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381463,597,039 - 63,604,186 (-)NCBI
Sequence:
RefSeq Acc Id: XM_054375310   ⟹   XP_054231285
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01457,804,429 - 57,811,576 (-)NCBI
RefSeq Acc Id: NP_542397   ⟸   NM_080666
- UniProtKB: Q96FK6 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001008726   ⟸   NM_001008726
- UniProtKB: Q96FK6 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001245201   ⟸   NM_001258272
- UniProtKB: Q96FK6 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_011534685   ⟸   XM_011536383
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: NP_001369353   ⟸   NM_001382424
- UniProtKB: Q96FK6 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: NP_001369356   ⟸   NM_001382427
- UniProtKB: Q96FK6 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: NP_001369357   ⟸   NM_001382428
- UniProtKB: Q96FK6 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: NP_001369352   ⟸   NM_001382423
- UniProtKB: Q96FK6 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: NP_001369358   ⟸   NM_001382429
- UniProtKB: Q96FK6 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: NP_001369354   ⟸   NM_001382425
- UniProtKB: Q96FK6 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: NP_001369355   ⟸   NM_001382426
- UniProtKB: Q96FK6 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: ENSP00000480112   ⟸   ENST00000620954
RefSeq Acc Id: ENSP00000267522   ⟸   ENST00000267522
RefSeq Acc Id: ENSP00000378399   ⟸   ENST00000394942
RefSeq Acc Id: ENSP00000451702   ⟸   ENST00000554717
RefSeq Acc Id: XP_054231285   ⟸   XM_054375310
- Peptide Label: isoform X1

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q96FK6-F1-model_v2 AlphaFold Q96FK6 1-387 view protein structure

Promoters
RGD ID:6792035
Promoter ID:HG_KWN:19550
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   CD4+TCell_12Hour,   CD4+TCell_2Hour,   HeLa_S3,   Jurkat,   K562,   Lymphoblastoid,   NB4
Transcripts:NM_001008726,   NM_080666
Position:
Human AssemblyChrPosition (strand)Source
Build 361463,178,111 - 63,179,017 (-)MPROMDB
RGD ID:7227825
Promoter ID:EPDNEW_H19658
Type:multiple initiation site
Name:WDR89_2
Description:WD repeat domain 89
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H19659  
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh381463,641,492 - 63,641,552EPDNEW
RGD ID:7227827
Promoter ID:EPDNEW_H19659
Type:initiation region
Name:WDR89_1
Description:WD repeat domain 89
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H19658  
Experiment Methods:Single-end sequencing.; Paired-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh381463,641,871 - 63,641,931EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:20489 AgrOrtholog
COSMIC WDR89 COSMIC
Ensembl Genes ENSG00000140006 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENST00000267522 ENTREZGENE
  ENST00000267522.7 UniProtKB/Swiss-Prot
  ENST00000394942.2 UniProtKB/Swiss-Prot
  ENST00000554717.1 UniProtKB/TrEMBL
  ENST00000620954 ENTREZGENE
  ENST00000620954.2 UniProtKB/Swiss-Prot
Gene3D-CATH 2.130.10.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
GTEx ENSG00000140006 GTEx
HGNC ID HGNC:20489 ENTREZGENE
Human Proteome Map WDR89 Human Proteome Map
InterPro WD40/YVTN_repeat-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WD40_repeat UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WD40_repeat_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WDR89 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report hsa:112840 UniProtKB/Swiss-Prot
NCBI Gene 112840 ENTREZGENE
PANTHER PTHR22889 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WD REPEAT-CONTAINING PROTEIN 89 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam WD40 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PharmGKB PA134871067 PharmGKB
PROSITE WD_REPEATS_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WD_REPEATS_REGION UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART WD40 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF50978 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt G3V4B8_HUMAN UniProtKB/TrEMBL
  Q96FK6 ENTREZGENE, UniProtKB/Swiss-Prot