IL21 (interleukin 21) - Rat Genome Database

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Gene: IL21 (interleukin 21) Homo sapiens
Analyze
Symbol: IL21
Name: interleukin 21
RGD ID: 1316553
HGNC Page HGNC:6005
Description: Enables interleukin-2 receptor binding activity. Involved in several processes, including positive regulation of interleukin-17 production; positive regulation of natural killer cell mediated cytotoxicity; and tyrosine phosphorylation of STAT protein. Acts upstream of or within positive regulation of B cell proliferation; positive regulation of T cell proliferation; and positive regulation of tyrosine phosphorylation of STAT protein. Predicted to be located in extracellular region. Implicated in asthma; common variable immunodeficiency 11; hepatocellular carcinoma; and systemic lupus erythematosus. Biomarker of several diseases, including anogenital venereal wart; autoimmune disease (multiple); dengue hemorrhagic fever; human immunodeficiency virus infectious disease; and tropical spastic paraparesis.
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: CVID11; IL-21; interleukin-21; interleukin-21 isoform; Za11
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh384122,610,108 - 122,621,066 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl4122,610,108 - 122,621,066 (-)EnsemblGRCh38hg38GRCh38
GRCh374123,531,263 - 123,542,221 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 364123,739,272 - 123,761,662 (-)NCBINCBI36Build 36hg18NCBI36
Build 344123,891,388 - 123,899,817NCBI
Celera4120,916,832 - 120,925,261 (-)NCBICelera
Cytogenetic Map4q27NCBI
HuRef4119,260,228 - 119,268,550 (-)NCBIHuRef
CHM1_14123,510,250 - 123,518,679 (-)NCBICHM1_1
T2T-CHM13v2.04125,914,209 - 125,925,168 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Interleukin-21 plays a critical role in the pathogenesis and severity of type I autoimmune hepatitis. Abe K, etal., Springerplus. 2016 Jun 18;5(1):777. doi: 10.1186/s40064-016-2512-y. eCollection 2016.
2. Possible role of interleukin 21 and interleukin 33 in patients with genital warts. Abu El-Hamd M, etal., Dermatol Ther. 2019 Sep;32(5):e13063. doi: 10.1111/dth.13063. Epub 2019 Aug 29.
3. Impaired autoimmune T helper 17 cell responses following DNA vaccination against rat experimental autoimmune encephalomyelitis. Andersson A, etal., PLoS One. 2008;3(11):e3682. Epub 2008 Nov 10.
4. Interleukin-21-dependent modulation of T cell antigen receptor reactivity towards low affinity peptide ligands in autoreactive CD8(+) T lymphocytes. Bobbala D, etal., Cytokine. 2016 Sep;85:83-91. doi: 10.1016/j.cyto.2016.06.011. Epub 2016 Jun 11.
5. IL-21 is highly produced in Helicobacter pylori-infected gastric mucosa and promotes gelatinases synthesis. Caruso R, etal., J Immunol. 2007 May 1;178(9):5957-65. doi: 10.4049/jimmunol.178.9.5957.
6. A common exonic variant of interleukin21 confers susceptibility to atopic asthma. Chatterjee R, etal., Int Arch Allergy Immunol. 2009;148(2):137-46. Epub 2008 Sep 19.
7. Genome-wide analysis of extended pedigrees confirms IL2-IL21 linkage and shows additional regions of interest potentially influencing coeliac disease risk. Einarsdottir E, etal., Tissue Antigens. 2011 Dec;78(6):428-37. doi: 10.1111/j.1399-0039.2011.01791.x.
8. IL-21 and IL-6 are critical for different aspects of B cell immunity and redundantly induce optimal follicular helper CD4 T cell (Tfh) differentiation. Eto D, etal., PLoS One. 2011 Mar 14;6(3):e17739. doi: 10.1371/journal.pone.0017739.
9. HCV-specific interleukin-21+CD4+ T cells responses associated with viral control through the modulation of HCV-specific CD8+ T cells function in chronic hepatitis C patients. Feng G, etal., Mol Cells. 2013 Oct;36(4):362-7. doi: 10.1007/s10059-013-0181-z. Epub 2013 Oct 22.
10. Promotion of a functional B cell germinal center response after Leishmania species co-infection is associated with lesion resolution. Gibson-Corley KN, etal., Am J Pathol. 2012 May;180(5):2009-17. doi: 10.1016/j.ajpath.2012.01.012. Epub 2012 Mar 17.
11. GOAs Human GO annotations GOA_HUMAN data from the GO Consortium
12. Combinatory gene therapy with electrotransfer of midkine promoter-HSV-TK and interleukin-21. Hanari N, etal., Anticancer Res. 2007 Jul-Aug;27(4B):2305-10.
13. Antitumor efficacy of viable tumor vaccine modified by heterogenetic ESAT-6 antigen and cytokine IL-21 in melanomatous mouse. He X, etal., Immunol Res. 2012 Jun;52(3):240-9. doi: 10.1007/s12026-012-8332-4.
14. Association of IL-17, IL-21, and IL-23R gene polymorphisms with HBV infection in kidney transplant patients. Hejr S, etal., Viral Immunol. 2013 Jun;26(3):201-6. doi: 10.1089/vim.2013.0007. Epub 2013 May 8.
15. IL-21 administration into the nostril alleviates murine allergic rhinitis. Hiromura Y, etal., J Immunol. 2007 Nov 15;179(10):7157-65.
16. Interleukin-21 mRNA expression during virus infections. Holm C, etal., Cytokine. 2006 Jan 7;33(1):41-5. doi: 10.1016/j.cyto.2005.11.014. Epub 2006 Jan 5.
17. Immunization with DNA vaccine expressing herpes simplex virus type 1 gD and IL-21 protects against mouse herpes keratitis. Hu K, etal., Immunol Invest. 2011;40(3):265-78. doi: 10.3109/08820139.2010.534219. Epub 2011 Jan 4.
18. Interleukin-21 is upregulated in hepatitis B-related acute-on-chronic liver failure and associated with severity of liver disease. Hu X, etal., J Viral Hepat. 2011 Jul;18(7):458-67. doi: 10.1111/j.1365-2893.2011.01475.x. Epub 2011 Jun 1.
19. Interleukin-21 receptor signalling is important for innate immune protection against HSV-2 infections. Kratholm SK, etal., PLoS One. 2013 Dec 16;8(12):e81790. doi: 10.1371/journal.pone.0081790. eCollection 2013.
20. Gene-gene and gene-sex epistatic interactions of MiR146a, IRF5, IKZF1, ETS1 and IL21 in systemic lupus erythematosus. Leng RX, etal., PLoS One. 2012;7(12):e51090. doi: 10.1371/journal.pone.0051090. Epub 2012 Dec 7.
21. Interleukin-21 responses in patients with chronic hepatitis B. Li J, etal., J Interferon Cytokine Res. 2015 Feb;35(2):134-42. doi: 10.1089/jir.2013.0119. Epub 2014 Sep 22.
22. IL21 and IL21R polymorphisms and their interactive effects on serum IL-21 and IgE levels in patients with chronic hepatitis B virus infection. Li N, etal., Hum Immunol. 2013 May;74(5):567-73. doi: 10.1016/j.humimm.2013.01.005. Epub 2013 Jan 24.
23. Adaptive immune response in osteoclastic bone resorption induced by orally administered Aggregatibacter actinomycetemcomitans in a rat model of periodontal disease. Li Y, etal., Mol Oral Microbiol. 2010 Aug;25(4):275-92.
24. Interleukin-21 Is Associated with Early Antiviral Response in Patients with Hepatitis B e Antigen-Positive Chronic Hepatitis B and Nonalcoholic Fatty Liver Disease. Liu X, etal., J Interferon Cytokine Res. 2016 Jun;36(6):367-73. doi: 10.1089/jir.2015.0129. Epub 2016 Feb 3.
25. IL-21 Is Important for Induction of KLRG1+ Effector CD8 T Cells during Acute Intracellular Infection. Moretto MM and Khan IA, J Immunol. 2016 Jan 1;196(1):375-84. doi: 10.4049/jimmunol.1501258. Epub 2015 Nov 23.
26. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
27. Increased levels of IL-21 responses are associated with the severity of liver injury in patients with chronic active hepatitis B. Pan Q, etal., J Viral Hepat. 2014;21(9):e78-88. doi: 10.1111/jvh.12242. Epub 2014 Mar 10.
28. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
29. Disruption of IL-21 signaling affects T cell-B cell interactions and abrogates protective humoral immunity to malaria. Pérez-Mazliah D, etal., PLoS Pathog. 2015 Mar 12;11(3):e1004715. doi: 10.1371/journal.ppat.1004715. eCollection 2015 Mar.
30. Role of IL-21 in HTLV-1 infections with emphasis on HTLV-1-associated myelopathy/tropical spastic paraparesis (HAM/TSP). Rajaei T, etal., Med Microbiol Immunol. 2017 Jun;206(3):195-201. doi: 10.1007/s00430-017-0492-3. Epub 2017 Apr 4.
31. Interleukin 21 augments the hepatitis B virus-specific CD8+ T-cell response in vitro in patients coinfected with HIV-1. Ren G, etal., AIDS. 2012 Nov 13;26(17):2145-53. doi: 10.1097/QAD.0b013e328359b7ae.
32. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
33. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
34. RGD HPO Phenotype Annotation Pipeline RGD automated import pipeline for human HPO-to-gene-to-disease annotations
35. IL-21 and IL-15 cytokine DNA augments HSV specific effector and memory CD8+ T cell response. Rodrigues L, etal., Mol Immunol. 2009 Apr;46(7):1494-504. doi: 10.1016/j.molimm.2008.12.033. Epub 2009 Feb 23.
36. Anti-IL-21 monoclonal antibody combined with liraglutide effectively reverses established hyperglycemia in mouse models of type 1 diabetes. Rydén AK, etal., J Autoimmun. 2017 Nov;84:65-74. doi: 10.1016/j.jaut.2017.07.006. Epub 2017 Jul 12.
37. IL-21-based therapies induce clearance of hepatitis B virus persistence in mouse models. Shen Z, etal., Theranostics. 2019 May 31;9(13):3798-3811. doi: 10.7150/thno.35331. eCollection 2019.
38. Characterization of IL-21-expressing recombinant hepatitis B virus (HBV) as a therapeutic agent targeting persisting HBV infection. Shen Z, etal., Theranostics. 2020 Apr 25;10(12):5600-5612. doi: 10.7150/thno.44715. eCollection 2020.
39. IL-21 promotes the pathologic immune response to pneumovirus infection. Spolski R, etal., J Immunol. 2012 Feb 15;188(4):1924-32. Epub 2012 Jan 11.
40. IL-21 is required for optimal antibody production and T cell responses during chronic Toxoplasma gondii infection. Stumhofer JS, etal., PLoS One. 2013 May 7;8(5):e62889. doi: 10.1371/journal.pone.0062889. Print 2013.
41. Bupi Hewei decoction ameliorates 5-fluorouracil-induced intestinal dysbiosis in rats through T helper 17/T regulatory cell signaling pathway. Sun Z, etal., J Tradit Chin Med. 2020 Feb;40(1):38-48.
42. Interleukin 21 Reinvigorates the Antiviral Activity of Hepatitis B Virus (HBV)-Specific CD8+ T Cells in Chronic HBV Infection. Tang L, etal., J Infect Dis. 2019 Feb 15;219(5):750-759. doi: 10.1093/infdis/jiy576.
43. Immunization with dendritic cell-based DNA vaccine pRSC-NLDC145.gD-IL21 protects mice against herpes simplex virus keratitis. Tang R, etal., Immunotherapy. 2018 Mar;10(3):189-200. doi: 10.2217/imt-2017-0060.
44. Dynamics of interleukin-21 production during the clinical course of primary and secondary dengue virus infections. Vivanco-Cid H, etal., Immunol Lett. 2014 Sep;161(1):89-95. doi: 10.1016/j.imlet.2014.05.006. Epub 2014 May 22.
45. Immune correlates of hepatitis B surface antigen spontaneous seroconversion in hepatitis B e antigen negative chronic hepatitis B patients. Vyas AK, etal., Liver Int. 2018 Jan;38(1):38-49. doi: 10.1111/liv.13475. Epub 2017 Jun 1.
46. Dysregulated Response of Follicular Helper T Cells to Hepatitis B Surface Antigen Promotes HBV Persistence in Mice and Associates With Outcomes of Patients. Wang X, etal., Gastroenterology. 2018 Jun;154(8):2222-2236. doi: 10.1053/j.gastro.2018.03.021. Epub 2018 Mar 12.
47. Role of interleukin-21 and interleukin-21 receptor polymorphisms in the treatment of HBeAg-positive chronic hepatitis B patients with peginterferon. Wang X, etal., Medicine (Baltimore). 2018 Jun;97(23):e10891. doi: 10.1097/MD.0000000000010891.
48. Cerebrospinal fluid IL-21 levels in Neuromyelitis Optica and multiple sclerosis. Wu A, etal., Can J Neurol Sci. 2012 Nov;39(6):813-20. doi: 10.1017/s0317167100015663.
49. Increased frequency of follicular helper T cells in mice viral myocarditis is relevant with anti-ANT antoantibody. Yang F, etal., Virol J. 2015 Feb 11;12:20. doi: 10.1186/s12985-015-0257-9.
50. Interleukin-21 gene polymorphisms and chronic hepatitis B infection in a Chinese population. Yao JY, etal., World J Gastroenterol. 2015 Apr 14;21(14):4232-9. doi: 10.3748/wjg.v21.i14.4232.
51. Interleukin-21 (IL-21) Downregulates Dendritic Cell Cytokine Responses to Helicobacter pylori and Modulates T Lymphocyte IL-17A Expression in Peyer's Patches during Infection. Yasmin S, etal., Infect Immun. 2019 Oct 18;87(11). pii: IAI.00237-19. doi: 10.1128/IAI.00237-19. Print 2019 Nov.
52. Fusobacterium Nucleatum Subspecies Animalis Influences Proinflammatory Cytokine Expression and Monocyte Activation in Human Colorectal Tumors. Ye X, etal., Cancer Prev Res (Phila). 2017 Jul;10(7):398-409. doi: 10.1158/1940-6207.CAPR-16-0178. Epub 2017 May 8.
53. IL-21 promotes late activator APC-mediated T follicular helper cell differentiation in experimental pulmonary virus infection. Yoo JK and Braciale TJ, PLoS One. 2014 Sep 24;9(9):e105872. doi: 10.1371/journal.pone.0105872. eCollection 2014.
Additional References at PubMed
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PMID:15178704   PMID:15207081   PMID:15489334   PMID:15494482   PMID:15546387   PMID:15684054   PMID:15765404   PMID:15919378   PMID:16002671   PMID:16081794   PMID:16138102   PMID:16339522  
PMID:16424177   PMID:16482511   PMID:16551679   PMID:17015683   PMID:17015709   PMID:17130531   PMID:17142735   PMID:17178921   PMID:17207965   PMID:17241869   PMID:17462506   PMID:17509926  
PMID:17558408   PMID:17565991   PMID:17624663   PMID:17672918   PMID:17673207   PMID:17698559   PMID:17703412   PMID:17712836   PMID:17713571   PMID:17720724   PMID:17785794   PMID:17888893  
PMID:17921346   PMID:17938255   PMID:17947662   PMID:17988587   PMID:18005035   PMID:18056361   PMID:18182577   PMID:18209077   PMID:18222514   PMID:18259184   PMID:18296629   PMID:18299268  
PMID:18311140   PMID:18418394   PMID:18469800   PMID:18482208   PMID:18593762   PMID:18641314   PMID:18684866   PMID:18773086   PMID:18788946   PMID:18805825   PMID:18829491   PMID:18947877  
PMID:18981102   PMID:19022821   PMID:19026702   PMID:19073967   PMID:19201773   PMID:19234181   PMID:19258923   PMID:19302705   PMID:19322899   PMID:19404967   PMID:19447148   PMID:19471255  
PMID:19523143   PMID:19561536   PMID:19592276   PMID:19592644   PMID:19608866   PMID:19617351   PMID:19648290   PMID:19675172   PMID:19684581   PMID:19693089   PMID:19762555   PMID:19774453  
PMID:19797296   PMID:19949086   PMID:19997967   PMID:19998455   PMID:20048285   PMID:20049410   PMID:20072139   PMID:20079789   PMID:20103765   PMID:20112382   PMID:20186935   PMID:20190192  
PMID:20190752   PMID:20203524   PMID:20219786   PMID:20233754   PMID:20237496   PMID:20423656   PMID:20444755   PMID:20453842   PMID:20498205   PMID:20503287   PMID:20519650   PMID:20553587  
PMID:20571486   PMID:20594126   PMID:20596022   PMID:20817119   PMID:20848219   PMID:20848568   PMID:20871161   PMID:20881011   PMID:20888735   PMID:20962850   PMID:21048031   PMID:21055341  
PMID:21064084   PMID:21116820   PMID:21129248   PMID:21175418   PMID:21181220   PMID:21227406   PMID:21269573   PMID:21281812   PMID:21297633   PMID:21304239   PMID:21357266   PMID:21375519  
PMID:21391901   PMID:21425124   PMID:21430229   PMID:21441456   PMID:21524651   PMID:21531891   PMID:21648020   PMID:21685912   PMID:21688385   PMID:21724243   PMID:21736561   PMID:21768062  
PMID:21873635   PMID:21938013   PMID:21945025   PMID:21959034   PMID:21968544   PMID:21987656   PMID:22009762   PMID:22030011   PMID:22032620   PMID:22038405   PMID:22039266   PMID:22057994  
PMID:22122790   PMID:22235133   PMID:22238455   PMID:22250083   PMID:22261234   PMID:22279576   PMID:22430249   PMID:22450323   PMID:22491065   PMID:22532637   PMID:22554193   PMID:22649468  
PMID:22705151   PMID:22748465   PMID:22752563   PMID:22753386   PMID:22763176   PMID:22840497   PMID:22922252   PMID:22922259   PMID:22930279   PMID:22948743   PMID:22976953   PMID:23064011  
PMID:23097377   PMID:23128233   PMID:23137515   PMID:23172754   PMID:23176102   PMID:23215754   PMID:23278180   PMID:23280509   PMID:23288348   PMID:23296193   PMID:23312859   PMID:23325890  
PMID:23396946   PMID:23407551   PMID:23479229   PMID:23480181   PMID:23553807   PMID:23571506   PMID:23579027   PMID:23607532   PMID:23645042   PMID:23676143   PMID:23710828   PMID:23738704  
PMID:23741351   PMID:23817571   PMID:23818845   PMID:23825648   PMID:23940030   PMID:24014238   PMID:24043893   PMID:24126614   PMID:24138885   PMID:24187103   PMID:24214876   PMID:24287789  
PMID:24289584   PMID:24389496   PMID:24390342   PMID:24409674   PMID:24430489   PMID:24434811   PMID:24445858   PMID:24495300   PMID:24510007   PMID:24673562   PMID:24702489   PMID:24746753  
PMID:24757284   PMID:24789434   PMID:24796415   PMID:24823512   PMID:24879484   PMID:24999842   PMID:25074442   PMID:25117075   PMID:25126827   PMID:25129403   PMID:25172491   PMID:25241761  
PMID:25343703   PMID:25351608   PMID:25377634   PMID:25495679   PMID:25500255   PMID:25604047   PMID:25647271   PMID:25652388   PMID:25758713   PMID:25780036   PMID:25784172   PMID:25801685  
PMID:25894310   PMID:25941359   PMID:26055806   PMID:26151690   PMID:26166388   PMID:26194763   PMID:26239551   PMID:26305332   PMID:26345892   PMID:26358223   PMID:26377996   PMID:26416419  
PMID:26466984   PMID:26482544   PMID:26535636   PMID:26566861   PMID:26646149   PMID:26646950   PMID:26742440   PMID:26748727   PMID:26802931   PMID:26818544   PMID:26825047   PMID:26917059  
PMID:26945832   PMID:26990619   PMID:27122304   PMID:27124305   PMID:27157859   PMID:27233967   PMID:27242164   PMID:27269940   PMID:27295539   PMID:27306193   PMID:27435400   PMID:27611173  
PMID:27733582   PMID:27884624   PMID:28043029   PMID:28057742   PMID:28112376   PMID:28130496   PMID:28233079   PMID:28259000   PMID:28427414   PMID:28514442   PMID:28650673   PMID:28685527  
PMID:28798470   PMID:28802832   PMID:28887120   PMID:28918288   PMID:29103189   PMID:29119640   PMID:29131072   PMID:29247327   PMID:29503347   PMID:29683891   PMID:29717110   PMID:29728406  
PMID:29987050   PMID:30005016   PMID:30106099   PMID:30111631   PMID:30183349   PMID:30205088   PMID:30343493   PMID:30451792   PMID:30464201   PMID:30537793   PMID:30587125   PMID:30672610  
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PMID:31536480   PMID:31545959   PMID:31573051   PMID:31780735   PMID:31816393   PMID:32130409   PMID:32296183   PMID:32704112   PMID:32707423   PMID:32855360   PMID:32971931   PMID:33145710  
PMID:33173427   PMID:33232805   PMID:33247940   PMID:33584666   PMID:33673829   PMID:33815416   PMID:33818809   PMID:33936071   PMID:34027881   PMID:34135061   PMID:34282497   PMID:34325305  
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PMID:37875903   PMID:37972478   PMID:38638431   PMID:39056553  


Genomics

Comparative Map Data
IL21
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh384122,610,108 - 122,621,066 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl4122,610,108 - 122,621,066 (-)EnsemblGRCh38hg38GRCh38
GRCh374123,531,263 - 123,542,221 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 364123,739,272 - 123,761,662 (-)NCBINCBI36Build 36hg18NCBI36
Build 344123,891,388 - 123,899,817NCBI
Celera4120,916,832 - 120,925,261 (-)NCBICelera
Cytogenetic Map4q27NCBI
HuRef4119,260,228 - 119,268,550 (-)NCBIHuRef
CHM1_14123,510,250 - 123,518,679 (-)NCBICHM1_1
T2T-CHM13v2.04125,914,209 - 125,925,168 (-)NCBIT2T-CHM13v2.0
Il21
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39337,276,908 - 37,286,785 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl337,276,908 - 37,286,785 (-)EnsemblGRCm39 Ensembl
GRCm38337,222,759 - 37,232,636 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl337,222,759 - 37,232,636 (-)EnsemblGRCm38mm10GRCm38
MGSCv37337,121,681 - 37,131,540 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36337,107,141 - 37,117,000 (-)NCBIMGSCv36mm8
MGSCv36337,414,308 - 37,424,167 (-)NCBIMGSCv36mm8
Celera337,106,874 - 37,116,609 (-)NCBICelera
Cytogenetic Map3BNCBI
cM Map318.36NCBI
Il21
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82122,045,240 - 122,055,142 (-)NCBIGRCr8
mRatBN7.22120,117,105 - 120,127,012 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2120,119,444 - 120,126,996 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2126,682,458 - 126,689,816 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02124,794,962 - 124,802,318 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02119,423,940 - 119,431,294 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02123,965,021 - 123,972,356 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2123,965,021 - 123,972,356 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02143,573,215 - 143,580,530 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42123,774,331 - 123,781,697 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12123,697,822 - 123,750,231 (-)NCBI
Celera2115,067,969 - 115,075,326 (-)NCBICelera
Cytogenetic Map2q25NCBI
Il21
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542818,057,096 - 18,065,492 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542818,057,096 - 18,065,492 (+)NCBIChiLan1.0ChiLan1.0
IL21
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v23120,394,845 - 120,405,796 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan14120,660,750 - 120,671,701 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v04114,795,979 - 114,806,936 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.14125,940,979 - 125,951,915 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl4125,943,495 - 125,951,915 (-)Ensemblpanpan1.1panPan2
IL21
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11917,641,833 - 17,651,275 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1917,641,833 - 17,651,266 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1917,860,011 - 17,869,452 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01917,760,158 - 17,769,609 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1917,760,158 - 17,769,600 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11917,712,780 - 17,722,226 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01917,993,018 - 18,002,469 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01918,463,313 - 18,472,753 (+)NCBIUU_Cfam_GSD_1.0
Il21
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530165,422,896 - 65,429,900 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366621,689,879 - 1,696,883 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366621,689,879 - 1,696,883 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
IL21
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl8101,532,531 - 101,541,713 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.18101,532,742 - 101,540,712 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.28108,688,772 - 108,696,742 (+)NCBISscrofa10.2Sscrofa10.2susScr3
IL21
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1769,859,793 - 69,872,237 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl769,863,535 - 69,872,025 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603748,822,863 - 48,834,392 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Il21
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247773,054,368 - 3,061,304 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247773,054,368 - 3,061,304 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in IL21
83 total Variants

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 4q26-35.2(chr4:118065569-190042639)x3 copy number gain See cases [RCV000051785] Chr4:118065569..190042639 [GRCh38]
Chr4:118986724..190828225 [GRCh37]
Chr4:119206172..191200788 [NCBI36]
Chr4:4q26-35.2
pathogenic
GRCh38/hg38 4q27-35.2(chr4:121518223-190062270)x3 copy number gain See cases [RCV000051786] Chr4:121518223..190062270 [GRCh38]
Chr4:122439378..190828225 [GRCh37]
Chr4:122658828..191220419 [NCBI36]
Chr4:4q27-35.2
pathogenic
GRCh38/hg38 4q22.2-32.3(chr4:92913386-165299707)x3 copy number gain Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000051775]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000051775]|See cases [RCV000051775] Chr4:92913386..165299707 [GRCh38]
Chr4:93834537..166220859 [GRCh37]
Chr4:94053560..166440309 [NCBI36]
Chr4:4q22.2-32.3
pathogenic
GRCh38/hg38 4q22.3-28.3(chr4:96092893-136410207)x3 copy number gain See cases [RCV000051776] Chr4:96092893..136410207 [GRCh38]
Chr4:97014044..137331362 [GRCh37]
Chr4:97233067..137550812 [NCBI36]
Chr4:4q22.3-28.3
pathogenic
GRCh38/hg38 4q26-31.21(chr4:116630862-145429900)x1 copy number loss See cases [RCV000053321] Chr4:116630862..145429900 [GRCh38]
Chr4:117552018..146351052 [GRCh37]
Chr4:117771466..146570502 [NCBI36]
Chr4:4q26-31.21
pathogenic
NM_021803.4(IL21):c.146T>C (p.Leu49Pro) single nucleotide variant IL21-related infantile inflammatory bowel disease [RCV000114995] Chr4:122620866 [GRCh38]
Chr4:123542021 [GRCh37]
Chr4:4q27
pathogenic
GRCh38/hg38 4q26-28.3(chr4:117351881-133565667)x1 copy number loss See cases [RCV000143207] Chr4:117351881..133565667 [GRCh38]
Chr4:118273037..134486822 [GRCh37]
Chr4:118492485..134706272 [NCBI36]
Chr4:4q26-28.3
pathogenic
GRCh37/hg19 4q26-35.2(chr4:119437495-190904301)x3 copy number gain See cases [RCV000240392] Chr4:119437495..190904301 [GRCh37]
Chr4:4q26-35.2
pathogenic
GRCh37/hg19 4p16.3-q35.2(chr4:12440-190904441)x3 copy number gain See cases [RCV000446653] Chr4:12440..190904441 [GRCh37]
Chr4:4p16.3-q35.2
pathogenic
NM_021803.4(IL21):c.234C>T (p.Cys78=) single nucleotide variant IL21-related infantile inflammatory bowel disease [RCV001730684]|not provided [RCV001511552]|not specified [RCV000454435] Chr4:122615808 [GRCh38]
Chr4:123536963 [GRCh37]
Chr4:4q27
benign
NM_021803.4(IL21):c.127A>T (p.Ile43Leu) single nucleotide variant not provided [RCV000983879]|not specified [RCV000455102] Chr4:122620885 [GRCh38]
Chr4:123542040 [GRCh37]
Chr4:4q27
likely benign|uncertain significance
GRCh37/hg19 4p16.3-q35.2(chr4:68346-190957473) copy number gain See cases [RCV000510453] Chr4:68346..190957473 [GRCh37]
Chr4:4p16.3-q35.2
pathogenic
GRCh37/hg19 4q25-35.2(chr4:109199664-189752726)x3 copy number gain See cases [RCV000511945] Chr4:109199664..189752726 [GRCh37]
Chr4:4q25-35.2
pathogenic
GRCh37/hg19 4q22.1-35.2(chr4:93071152-190957473)x3 copy number gain See cases [RCV000510970] Chr4:93071152..190957473 [GRCh37]
Chr4:4q22.1-35.2
pathogenic
GRCh37/hg19 4p16.3-q35.2(chr4:68346-190957473)x3 copy number gain See cases [RCV000512241] Chr4:68346..190957473 [GRCh37]
Chr4:4p16.3-q35.2
pathogenic
GRCh37/hg19 4q26-28.2(chr4:116307857-129302960)x1 copy number loss not provided [RCV000682448] Chr4:116307857..129302960 [GRCh37]
Chr4:4q26-28.2
pathogenic
GRCh37/hg19 4p16.3-q35.2(chr4:49450-190915650)x3 copy number gain not provided [RCV000743155] Chr4:49450..190915650 [GRCh37]
Chr4:4p16.3-q35.2
pathogenic
GRCh37/hg19 4p16.3-q35.2(chr4:49450-190963766)x3 copy number gain not provided [RCV000743156] Chr4:49450..190963766 [GRCh37]
Chr4:4p16.3-q35.2
pathogenic
GRCh37/hg19 4p16.3-q35.2(chr4:11525-191028879)x3 copy number gain not provided [RCV000743147] Chr4:11525..191028879 [GRCh37]
Chr4:4p16.3-q35.2
pathogenic
NM_021803.4(IL21):c.204+7C>T single nucleotide variant not provided [RCV000982735] Chr4:122620694 [GRCh38]
Chr4:123541849 [GRCh37]
Chr4:4q27
likely benign
NM_021803.4(IL21):c.451C>T (p.His151Tyr) single nucleotide variant not provided [RCV000822357] Chr4:122612748 [GRCh38]
Chr4:123533903 [GRCh37]
Chr4:4q27
uncertain significance
Single allele deletion Neurodevelopmental disorder [RCV000787448] Chr4:116624547..126168646 [GRCh37]
Chr4:4q26-28.1
likely pathogenic
NM_021803.4(IL21):c.83G>A (p.Ser28Asn) single nucleotide variant not provided [RCV001059465] Chr4:122620929 [GRCh38]
Chr4:123542084 [GRCh37]
Chr4:4q27
uncertain significance
NM_021803.4(IL21):c.273C>A (p.Asn91Lys) single nucleotide variant not provided [RCV001225911] Chr4:122615769 [GRCh38]
Chr4:123536924 [GRCh37]
Chr4:4q27
uncertain significance
NM_021803.4(IL21):c.361-330T>C single nucleotide variant not provided [RCV001635944] Chr4:122613258 [GRCh38]
Chr4:123534413 [GRCh37]
Chr4:4q27
benign
NM_021803.4(IL21):c.360+139dup duplication not provided [RCV001597961] Chr4:122615527..122615528 [GRCh38]
Chr4:123536682..123536683 [GRCh37]
Chr4:4q27
benign
NM_021803.4(IL21):c.360+150_360+154del deletion not provided [RCV001621896] Chr4:122615528..122615532 [GRCh38]
Chr4:123536683..123536687 [GRCh37]
Chr4:4q27
benign
NM_021803.4(IL21):c.*45G>A single nucleotide variant not provided [RCV001683777] Chr4:122612665 [GRCh38]
Chr4:123533820 [GRCh37]
Chr4:4q27
benign
NM_021803.4(IL21):c.471C>T (p.His157=) single nucleotide variant not provided [RCV000888975] Chr4:122612728 [GRCh38]
Chr4:123533883 [GRCh37]
Chr4:4q27
benign
NM_021803.4(IL21):c.319C>G (p.Pro107Ala) single nucleotide variant not provided [RCV001220116] Chr4:122615723 [GRCh38]
Chr4:123536878 [GRCh37]
Chr4:4q27
uncertain significance
NM_021803.4(IL21):c.47T>C (p.Met16Thr) single nucleotide variant not provided [RCV001209249]|not specified [RCV004033766] Chr4:122620965 [GRCh38]
Chr4:123542120 [GRCh37]
Chr4:4q27
uncertain significance
NM_021803.4(IL21):c.475A>C (p.Ser159Arg) single nucleotide variant not provided [RCV001064490] Chr4:122612724 [GRCh38]
Chr4:123533879 [GRCh37]
Chr4:4q27
uncertain significance
NM_021803.4(IL21):c.2T>C (p.Met1Thr) single nucleotide variant not provided [RCV000998290] Chr4:122621010 [GRCh38]
Chr4:123542165 [GRCh37]
Chr4:4q27
uncertain significance
NM_021803.4(IL21):c.168+8T>C single nucleotide variant not provided [RCV000890476] Chr4:122620836 [GRCh38]
Chr4:123541991 [GRCh37]
Chr4:4q27
likely benign
NM_021803.4(IL21):c.277G>A (p.Glu93Lys) single nucleotide variant not provided [RCV001061517] Chr4:122615765 [GRCh38]
Chr4:123536920 [GRCh37]
Chr4:4q27
uncertain significance
NM_021803.4(IL21):c.*31C>T single nucleotide variant not provided [RCV001612240] Chr4:122612679 [GRCh38]
Chr4:123533834 [GRCh37]
Chr4:4q27
benign
NM_021803.4(IL21):c.470A>T (p.His157Leu) single nucleotide variant not provided [RCV001237259] Chr4:122612729 [GRCh38]
Chr4:123533884 [GRCh37]
Chr4:4q27
uncertain significance
NM_021803.4(IL21):c.119G>A (p.Arg40His) single nucleotide variant IL21-related infantile inflammatory bowel disease [RCV001335107]|not provided [RCV001216053] Chr4:122620893 [GRCh38]
Chr4:123542048 [GRCh37]
Chr4:4q27
uncertain significance
NM_021803.4(IL21):c.282G>T (p.Arg94Ser) single nucleotide variant not provided [RCV001235295] Chr4:122615760 [GRCh38]
Chr4:123536915 [GRCh37]
Chr4:4q27
uncertain significance
NM_021803.4(IL21):c.118C>G (p.Arg40Gly) single nucleotide variant not provided [RCV001360860] Chr4:122620894 [GRCh38]
Chr4:123542049 [GRCh37]
Chr4:4q27
uncertain significance
NM_021803.4(IL21):c.37A>G (p.Ile13Val) single nucleotide variant not provided [RCV001344913] Chr4:122620975 [GRCh38]
Chr4:123542130 [GRCh37]
Chr4:4q27
uncertain significance
GRCh37/hg19 4q26-28.2(chr4:116833638-130232122) copy number loss Atypical behavior [RCV001352657] Chr4:116833638..130232122 [GRCh37]
Chr4:4q26-28.2
pathogenic
NM_021803.4(IL21):c.117G>A (p.Met39Ile) single nucleotide variant not provided [RCV001367800] Chr4:122620895 [GRCh38]
Chr4:123542050 [GRCh37]
Chr4:4q27
uncertain significance
NM_021803.4(IL21):c.222A>G (p.Ser74=) single nucleotide variant not provided [RCV001396426] Chr4:122615820 [GRCh38]
Chr4:123536975 [GRCh37]
Chr4:4q27
likely benign
NM_021803.4(IL21):c.337G>A (p.Gly113Arg) single nucleotide variant not provided [RCV001352572]|not specified [RCV004036694] Chr4:122615705 [GRCh38]
Chr4:123536860 [GRCh37]
Chr4:4q27
uncertain significance
NM_021803.4(IL21):c.205-10T>C single nucleotide variant not provided [RCV001401259] Chr4:122615847 [GRCh38]
Chr4:123537002 [GRCh37]
Chr4:4q27
likely benign
NM_021803.4(IL21):c.324T>C (p.Pro108=) single nucleotide variant not provided [RCV001435130] Chr4:122615718 [GRCh38]
Chr4:123536873 [GRCh37]
Chr4:4q27
likely benign
NM_021803.4(IL21):c.168+9A>G single nucleotide variant not provided [RCV001407390] Chr4:122620835 [GRCh38]
Chr4:123541990 [GRCh37]
Chr4:4q27
likely benign
GRCh37/hg19 4q26-28.3(chr4:114872547-138005267)x1 copy number loss not provided [RCV001795851] Chr4:114872547..138005267 [GRCh37]
Chr4:4q26-28.3
pathogenic
NM_021803.4(IL21):c.438+6T>C single nucleotide variant not provided [RCV002025644] Chr4:122612845 [GRCh38]
Chr4:123534000 [GRCh37]
Chr4:4q27
uncertain significance
NM_021803.4(IL21):c.358C>A (p.Leu120Ile) single nucleotide variant not provided [RCV001966564] Chr4:122615684 [GRCh38]
Chr4:123536839 [GRCh37]
Chr4:4q27
uncertain significance
NM_021803.4(IL21):c.92G>A (p.Gly31Asp) single nucleotide variant not provided [RCV002005284] Chr4:122620920 [GRCh38]
Chr4:123542075 [GRCh37]
Chr4:4q27
uncertain significance
NM_021803.4(IL21):c.100C>T (p.Arg34Cys) single nucleotide variant not provided [RCV001949147] Chr4:122620912 [GRCh38]
Chr4:123542067 [GRCh37]
Chr4:4q27
uncertain significance
GRCh37/hg19 4q24-31.21(chr4:104715235-145252595) copy number gain not specified [RCV002053446] Chr4:104715235..145252595 [GRCh37]
Chr4:4q24-31.21
pathogenic
NM_021803.4(IL21):c.130G>A (p.Asp44Asn) single nucleotide variant not provided [RCV002003172] Chr4:122620882 [GRCh38]
Chr4:123542037 [GRCh37]
Chr4:4q27
uncertain significance
GRCh37/hg19 4q12-31.21(chr4:52866944-143582507)x3 copy number gain not provided [RCV001827738] Chr4:52866944..143582507 [GRCh37]
Chr4:4q12-31.21
pathogenic
NM_021803.4(IL21):c.438G>T (p.Lys146Asn) single nucleotide variant not provided [RCV001966728] Chr4:122612851 [GRCh38]
Chr4:123534006 [GRCh37]
Chr4:4q27
uncertain significance
NM_021803.4(IL21):c.405A>T (p.Glu135Asp) single nucleotide variant not provided [RCV001909921] Chr4:122612884 [GRCh38]
Chr4:123534039 [GRCh37]
Chr4:4q27
uncertain significance
GRCh37/hg19 4q26-28.2(chr4:116888785-129649979) copy number loss not specified [RCV002053451] Chr4:116888785..129649979 [GRCh37]
Chr4:4q26-28.2
pathogenic
NM_021803.4(IL21):c.319C>T (p.Pro107Ser) single nucleotide variant not provided [RCV001916566] Chr4:122615723 [GRCh38]
Chr4:123536878 [GRCh37]
Chr4:4q27
uncertain significance
NM_021803.4(IL21):c.472G>A (p.Gly158Arg) single nucleotide variant not provided [RCV001958301] Chr4:122612727 [GRCh38]
Chr4:123533882 [GRCh37]
Chr4:4q27
uncertain significance
NC_000004.11:g.(?_123533865)_(124011880_?)dup duplication not provided [RCV001923176] Chr4:123533865..124011880 [GRCh37]
Chr4:4q27-28.1
uncertain significance
NC_000004.11:g.(?_123533865)_(123534103_?)dup duplication not provided [RCV002014667] Chr4:123533865..123534103 [GRCh37]
Chr4:4q27
uncertain significance
NM_021803.4(IL21):c.438+1_438+42del deletion not provided [RCV002048615] Chr4:122612809..122612850 [GRCh38]
Chr4:123533964..123534005 [GRCh37]
Chr4:4q27
uncertain significance
NC_000004.11:g.(?_123533865)_(123665180_?)del deletion Bardet-Biedl syndrome [RCV001980218] Chr4:123533865..123665180 [GRCh37]
Chr4:4q27
pathogenic
NM_021803.4(IL21):c.293T>C (p.Val98Ala) single nucleotide variant not provided [RCV001992974] Chr4:122615749 [GRCh38]
Chr4:123536904 [GRCh37]
Chr4:4q27
uncertain significance
NM_021803.4(IL21):c.169-20C>T single nucleotide variant not provided [RCV002193855] Chr4:122620756 [GRCh38]
Chr4:123541911 [GRCh37]
Chr4:4q27
likely benign
NM_021803.4(IL21):c.361-23_361-18del deletion not provided [RCV002133589] Chr4:122612946..122612951 [GRCh38]
Chr4:123534101..123534106 [GRCh37]
Chr4:4q27
likely benign
NM_021803.4(IL21):c.168+15G>A single nucleotide variant not provided [RCV002121110] Chr4:122620829 [GRCh38]
Chr4:123541984 [GRCh37]
Chr4:4q27
likely benign
NM_021803.4(IL21):c.361-19C>T single nucleotide variant not provided [RCV002179640] Chr4:122612947 [GRCh38]
Chr4:123534102 [GRCh37]
Chr4:4q27
likely benign
NM_021803.4(IL21):c.361-7T>C single nucleotide variant not provided [RCV002198497] Chr4:122612935 [GRCh38]
Chr4:123534090 [GRCh37]
Chr4:4q27
likely benign
NM_021803.4(IL21):c.204+18T>A single nucleotide variant not provided [RCV002138049] Chr4:122620683 [GRCh38]
Chr4:123541838 [GRCh37]
Chr4:4q27
likely benign
NC_000004.11:g.(?_121616266)_(124323706_?)dup duplication Microcephaly-intellectual disability-sensorineural hearing loss-epilepsy-abnormal muscle tone syndrome [RCV003113657] Chr4:121616266..124323706 [GRCh37]
Chr4:4q27-28.1
uncertain significance
NM_021803.4(IL21):c.311A>G (p.Lys104Arg) single nucleotide variant not provided [RCV002296427] Chr4:122615731 [GRCh38]
Chr4:123536886 [GRCh37]
Chr4:4q27
uncertain significance
NM_021803.4(IL21):c.485C>G (p.Ser162Cys) single nucleotide variant not provided [RCV002686348] Chr4:122612714 [GRCh38]
Chr4:123533869 [GRCh37]
Chr4:4q27
uncertain significance
NM_021803.4(IL21):c.439-19C>T single nucleotide variant not provided [RCV003076368] Chr4:122612779 [GRCh38]
Chr4:123533934 [GRCh37]
Chr4:4q27
likely benign
NM_021803.4(IL21):c.204+20T>C single nucleotide variant not provided [RCV002880964] Chr4:122620681 [GRCh38]
Chr4:123541836 [GRCh37]
Chr4:4q27
likely benign
NM_021803.4(IL21):c.439-18G>A single nucleotide variant not provided [RCV002616526] Chr4:122612778 [GRCh38]
Chr4:123533933 [GRCh37]
Chr4:4q27
likely benign
NM_021803.4(IL21):c.361-18T>G single nucleotide variant not provided [RCV002867898] Chr4:122612946 [GRCh38]
Chr4:123534101 [GRCh37]
Chr4:4q27
likely benign
NM_021803.4(IL21):c.394C>T (p.Pro132Ser) single nucleotide variant not provided [RCV002999805] Chr4:122612895 [GRCh38]
Chr4:123534050 [GRCh37]
Chr4:4q27
uncertain significance
NM_021803.4(IL21):c.298A>G (p.Ile100Val) single nucleotide variant not provided [RCV003002167] Chr4:122615744 [GRCh38]
Chr4:123536899 [GRCh37]
Chr4:4q27
uncertain significance
NM_021803.4(IL21):c.317A>G (p.Lys106Arg) single nucleotide variant not provided [RCV002791089] Chr4:122615725 [GRCh38]
Chr4:123536880 [GRCh37]
Chr4:4q27
uncertain significance
NM_021803.4(IL21):c.335C>T (p.Ala112Val) single nucleotide variant not specified [RCV004245260] Chr4:122615707 [GRCh38]
Chr4:123536862 [GRCh37]
Chr4:4q27
uncertain significance
NM_021803.4(IL21):c.72C>T (p.Val24=) single nucleotide variant not provided [RCV002765608] Chr4:122620940 [GRCh38]
Chr4:123542095 [GRCh37]
Chr4:4q27
likely benign
NM_021803.4(IL21):c.52A>G (p.Ile18Val) single nucleotide variant not provided [RCV002666625] Chr4:122620960 [GRCh38]
Chr4:123542115 [GRCh37]
Chr4:4q27
uncertain significance
NM_021803.4(IL21):c.165C>T (p.Asp55=) single nucleotide variant not provided [RCV002671078] Chr4:122620847 [GRCh38]
Chr4:123542002 [GRCh37]
Chr4:4q27
likely benign
NM_021803.4(IL21):c.487T>C (p.Ter163Arg) single nucleotide variant not provided [RCV002877087] Chr4:122612712 [GRCh38]
Chr4:123533867 [GRCh37]
Chr4:4q27
uncertain significance
NM_021803.4(IL21):c.438+16T>A single nucleotide variant not provided [RCV002653131] Chr4:122612835 [GRCh38]
Chr4:123533990 [GRCh37]
Chr4:4q27
likely benign
NM_021803.4(IL21):c.333T>A (p.Asn111Lys) single nucleotide variant not provided [RCV003069082] Chr4:122615709 [GRCh38]
Chr4:123536864 [GRCh37]
Chr4:4q27
uncertain significance
GRCh37/hg19 4q26-32.3(chr4:117518683-168174703)x3 copy number gain not provided [RCV003484198] Chr4:117518683..168174703 [GRCh37]
Chr4:4q26-32.3
pathogenic
NM_021803.4(IL21):c.39C>T (p.Ile13=) single nucleotide variant not provided [RCV003435151] Chr4:122620973 [GRCh38]
Chr4:123542128 [GRCh37]
Chr4:4q27
likely benign
NM_021803.4(IL21):c.444T>C (p.Ile148=) single nucleotide variant not provided [RCV003691638] Chr4:122612755 [GRCh38]
Chr4:123533910 [GRCh37]
Chr4:4q27
likely benign
NM_021803.4(IL21):c.291T>C (p.Asn97=) single nucleotide variant not provided [RCV003826525] Chr4:122615751 [GRCh38]
Chr4:123536906 [GRCh37]
Chr4:4q27
likely benign
NM_021803.4(IL21):c.322C>T (p.Pro108Ser) single nucleotide variant not provided [RCV003692843] Chr4:122615720 [GRCh38]
Chr4:123536875 [GRCh37]
Chr4:4q27
uncertain significance
NM_021803.4(IL21):c.168+17C>G single nucleotide variant not provided [RCV003579746] Chr4:122620827 [GRCh38]
Chr4:123541982 [GRCh37]
Chr4:4q27
likely benign
NM_021803.4(IL21):c.336A>C (p.Ala112=) single nucleotide variant not provided [RCV003699566] Chr4:122615706 [GRCh38]
Chr4:123536861 [GRCh37]
Chr4:4q27
likely benign
NM_021803.4(IL21):c.204+8C>A single nucleotide variant not provided [RCV003854981] Chr4:122620693 [GRCh38]
Chr4:123541848 [GRCh37]
Chr4:4q27
likely benign
NM_021803.4(IL21):c.360+16G>A single nucleotide variant not provided [RCV003670307] Chr4:122615666 [GRCh38]
Chr4:123536821 [GRCh37]
Chr4:4q27
likely benign
NM_021803.4(IL21):c.360+6A>C single nucleotide variant not provided [RCV003673305] Chr4:122615676 [GRCh38]
Chr4:123536831 [GRCh37]
Chr4:4q27
uncertain significance
NM_021803.4(IL21):c.394C>A (p.Pro132Thr) single nucleotide variant not provided [RCV003559408] Chr4:122612895 [GRCh38]
Chr4:123534050 [GRCh37]
Chr4:4q27
uncertain significance
NM_021803.4(IL21):c.266C>T (p.Thr89Ile) single nucleotide variant not provided [RCV003851087] Chr4:122615776 [GRCh38]
Chr4:123536931 [GRCh37]
Chr4:4q27
uncertain significance
NM_021803.4(IL21):c.175G>C (p.Glu59Gln) single nucleotide variant not provided [RCV003733607] Chr4:122620730 [GRCh38]
Chr4:123541885 [GRCh37]
Chr4:4q27
uncertain significance
NM_021803.4(IL21):c.16G>C (p.Gly6Arg) single nucleotide variant not provided [RCV003709326] Chr4:122620996 [GRCh38]
Chr4:123542151 [GRCh37]
Chr4:4q27
uncertain significance
NM_021803.4(IL21):c.168+20A>C single nucleotide variant not provided [RCV003728363] Chr4:122620824 [GRCh38]
Chr4:123541979 [GRCh37]
Chr4:4q27
likely benign
NM_021803.4(IL21):c.360+16G>C single nucleotide variant not provided [RCV003683184] Chr4:122615666 [GRCh38]
Chr4:123536821 [GRCh37]
Chr4:4q27
likely benign
NM_021803.4(IL21):c.351A>G (p.Lys117=) single nucleotide variant not provided [RCV003862009] Chr4:122615691 [GRCh38]
Chr4:123536846 [GRCh37]
Chr4:4q27
likely benign
NM_021803.4(IL21):c.206C>A (p.Thr69Lys) single nucleotide variant not provided [RCV003554691] Chr4:122615836 [GRCh38]
Chr4:123536991 [GRCh37]
Chr4:4q27
uncertain significance
GRCh37/hg19 4q27-28.1(chr4:123302296-124083892)x3 copy number gain not specified [RCV003986536] Chr4:123302296..124083892 [GRCh37]
Chr4:4q27-28.1
uncertain significance
NM_021803.4(IL21):c.53T>C (p.Ile18Thr) single nucleotide variant not provided [RCV003682059] Chr4:122620959 [GRCh38]
Chr4:123542114 [GRCh37]
Chr4:4q27
uncertain significance
GRCh37/hg19 4q24-35.2(chr4:101203509-190957473)x3 copy number gain not specified [RCV003986496] Chr4:101203509..190957473 [GRCh37]
Chr4:4q24-35.2
pathogenic
GRCh37/hg19 4q27-35.2(chr4:123399154-190957473)x3 copy number gain not specified [RCV003986533] Chr4:123399154..190957473 [GRCh37]
Chr4:4q27-35.2
pathogenic
NM_021803.4(IL21):c.425C>T (p.Ser142Leu) single nucleotide variant not provided [RCV003675721] Chr4:122612864 [GRCh38]
Chr4:123534019 [GRCh37]
Chr4:4q27
uncertain significance
NM_021803.4(IL21):c.168+18A>G single nucleotide variant not provided [RCV003564536] Chr4:122620826 [GRCh38]
Chr4:123541981 [GRCh37]
Chr4:4q27
likely benign
NM_021803.4(IL21):c.128T>C (p.Ile43Thr) single nucleotide variant not provided [RCV003862749] Chr4:122620884 [GRCh38]
Chr4:123542039 [GRCh37]
Chr4:4q27
uncertain significance
NM_021803.4(IL21):c.118C>T (p.Arg40Cys) single nucleotide variant not provided [RCV003864451] Chr4:122620894 [GRCh38]
Chr4:123542049 [GRCh37]
Chr4:4q27
uncertain significance
NM_021803.4(IL21):c.*3A>C single nucleotide variant IL21-related disorder [RCV003981352] Chr4:122612707 [GRCh38]
Chr4:123533862 [GRCh37]
Chr4:4q27
benign
GRCh37/hg19 4p12-q35.2(chr4:45455621-191003541)x3 copy number gain not provided [RCV003885507] Chr4:45455621..191003541 [GRCh37]
Chr4:4p12-q35.2
pathogenic
NC_000004.11:g.(?_121616266)_(124323706_?)del deletion not provided [RCV004580860] Chr4:121616266..124323706 [GRCh37]
Chr4:4q27-28.1
uncertain significance
NM_021803.4(IL21):c.134T>C (p.Ile45Thr) single nucleotide variant not specified [RCV004626389] Chr4:122620878 [GRCh38]
Chr4:123542033 [GRCh37]
Chr4:4q27
uncertain significance
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:55
Count of miRNA genes:53
Interacting mature miRNAs:53
Transcripts:ENST00000264497
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1643256BW127_HBody Weight QTL 127 (human)1.310.007Body weightbody mass index4106319694132319694Human

Markers in Region
G33978  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh374123,522,121 - 123,522,218UniSTSGRCh37
Build 364123,741,571 - 123,741,668RGDNCBI36
Celera4120,905,169 - 120,905,266RGD
Cytogenetic Map4q26-q27UniSTS
HuRef4119,248,565 - 119,248,662UniSTS
D4S1279  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh374123,522,019 - 123,522,171UniSTSGRCh37
Build 364123,741,469 - 123,741,621RGDNCBI36
Celera4120,905,067 - 120,905,219RGD
Cytogenetic Map4q26-q27UniSTS
HuRef4119,248,463 - 119,248,615UniSTS
TNG Radiation Hybrid Map477516.0UniSTS


Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
sensory system
33 178 48 27 73 114 241 43 274 40 51 407 295 54 53 427 186 3

Sequence

Nucleotide Sequences
RefSeq Transcripts NG_031966 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001207006 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_021803 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC053545 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF254069 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY763518 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC066258 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC066259 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC066260 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC066261 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC066262 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC069124 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CD559460 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CD559613 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471056 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CP068274 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CS080568 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CS237090 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CS450761 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CS582814 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DQ645417 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FB677173 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GM619752 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HB976773 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HC196689 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HC203173 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HC203434 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HC686913 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JA104585 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  LC133256 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENST00000611104   ⟹   ENSP00000477555
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl4122,612,710 - 122,621,011 (-)Ensembl
Ensembl Acc Id: ENST00000647784
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl4122,612,283 - 122,618,894 (-)Ensembl
Ensembl Acc Id: ENST00000648588   ⟹   ENSP00000497915
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl4122,610,108 - 122,621,066 (-)Ensembl
RefSeq Acc Id: NM_001207006   ⟹   NP_001193935
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh384122,612,628 - 122,621,066 (-)NCBI
GRCh374123,533,783 - 123,542,212 (-)NCBI
HuRef4119,260,228 - 119,268,550 (-)NCBI
CHM1_14123,510,250 - 123,518,679 (-)NCBI
T2T-CHM13v2.04125,916,729 - 125,925,168 (-)NCBI
Sequence:
RefSeq Acc Id: NM_021803   ⟹   NP_068575
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh384122,610,108 - 122,621,066 (-)NCBI
GRCh374123,533,783 - 123,542,212 (-)NCBI
Build 364123,739,272 - 123,761,662 (-)NCBI Archive
HuRef4119,260,228 - 119,268,550 (-)NCBI
CHM1_14123,510,250 - 123,518,679 (-)NCBI
T2T-CHM13v2.04125,914,209 - 125,925,168 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001193935 (Get FASTA)   NCBI Sequence Viewer  
  NP_068575 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAG29348 (Get FASTA)   NCBI Sequence Viewer  
  AAH66258 (Get FASTA)   NCBI Sequence Viewer  
  AAH66259 (Get FASTA)   NCBI Sequence Viewer  
  AAH66260 (Get FASTA)   NCBI Sequence Viewer  
  AAH66261 (Get FASTA)   NCBI Sequence Viewer  
  AAH66262 (Get FASTA)   NCBI Sequence Viewer  
  AAH69124 (Get FASTA)   NCBI Sequence Viewer  
  AAU88182 (Get FASTA)   NCBI Sequence Viewer  
  ABG36529 (Get FASTA)   NCBI Sequence Viewer  
  BBA22643 (Get FASTA)   NCBI Sequence Viewer  
  CAI94500 (Get FASTA)   NCBI Sequence Viewer  
  CAJ47524 (Get FASTA)   NCBI Sequence Viewer  
  CAL81203 (Get FASTA)   NCBI Sequence Viewer  
  CAN87399 (Get FASTA)   NCBI Sequence Viewer  
  CAS03522 (Get FASTA)   NCBI Sequence Viewer  
  CAV33288 (Get FASTA)   NCBI Sequence Viewer  
  CBE74752 (Get FASTA)   NCBI Sequence Viewer  
  CBI70418 (Get FASTA)   NCBI Sequence Viewer  
  CBI85469 (Get FASTA)   NCBI Sequence Viewer  
  CBI85472 (Get FASTA)   NCBI Sequence Viewer  
  CBL93962 (Get FASTA)   NCBI Sequence Viewer  
  CCA63962 (Get FASTA)   NCBI Sequence Viewer  
  EAX05226 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSP00000477555
  ENSP00000477555.1
  ENSP00000497915
  ENSP00000497915.1
GenBank Protein Q9HBE4 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_068575   ⟸   NM_021803
- Peptide Label: isoform 1 precursor
- UniProtKB: A5J0L4 (UniProtKB/Swiss-Prot),   Q9HBE4 (UniProtKB/Swiss-Prot),   A0A224B028 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001193935   ⟸   NM_001207006
- Peptide Label: isoform 2 precursor
- UniProtKB: Q9HBE4 (UniProtKB/Swiss-Prot)
- Sequence:
Ensembl Acc Id: ENSP00000497915   ⟸   ENST00000648588
Ensembl Acc Id: ENSP00000477555   ⟸   ENST00000611104

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9HBE4-F1-model_v2 AlphaFold Q9HBE4 1-162 view protein structure

Promoters
RGD ID:6868418
Promoter ID:EPDNEW_H7374
Type:single initiation site
Name:IL21_1
Description:interleukin 21
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh384122,621,066 - 122,621,126EPDNEW
RGD ID:6802380
Promoter ID:HG_KWN:49059
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell
Transcripts:OTTHUMT00000256713,   UC010INT.1
Position:
Human AssemblyChrPosition (strand)Source
Build 364123,761,266 - 123,761,766 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:6005 AgrOrtholog
COSMIC IL21 COSMIC
Ensembl Genes ENSG00000138684 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENST00000611104 ENTREZGENE
  ENST00000611104.2 UniProtKB/Swiss-Prot
  ENST00000648588 ENTREZGENE
  ENST00000648588.1 UniProtKB/Swiss-Prot
Gene3D-CATH 1.20.1250.70 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
GTEx ENSG00000138684 GTEx
HGNC ID HGNC:6005 ENTREZGENE
Human Proteome Map IL21 Human Proteome Map
InterPro 4_helix_cytokine-like_core UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  IL-15/IL-21_fam UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report hsa:59067 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
NCBI Gene 59067 ENTREZGENE
OMIM 605384 OMIM
PANTHER INTERLEUKIN-21 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR14356 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam IL15 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PharmGKB PA29820 PharmGKB
Superfamily-SCOP SSF47266 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A224B028 ENTREZGENE, UniProtKB/TrEMBL
  A5J0L4 ENTREZGENE
  IL21_HUMAN UniProtKB/Swiss-Prot, ENTREZGENE
UniProt Secondary A5J0L4 UniProtKB/Swiss-Prot