Slc27a4 (solute carrier family 27 (fatty acid transporter), member 4) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Slc27a4 (solute carrier family 27 (fatty acid transporter), member 4) Mus musculus
Analyze
Symbol: Slc27a4
Name: solute carrier family 27 (fatty acid transporter), member 4
RGD ID: 1316552
MGI Page MGI
Description: Enables oleoyl-CoA ligase activity and very long-chain fatty acid-CoA ligase activity. Involved in glucose import in response to insulin stimulus; long-chain fatty acid import into cell; and negative regulation of all-trans-retinyl-ester hydrolase, 11-cis retinol forming activity. Acts upstream of or within several processes, including fatty acid metabolic process; lipid transport; and skin development. Located in brush border membrane; endoplasmic reticulum; and microvillus. Is expressed in several structures, including alimentary system; eye; liver; nervous system; and urinary system. Used to study lethal restrictive dermopathy. Orthologous to human SLC27A4 (solute carrier family 27 member 4).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: ACSVL4; arachidonate--CoA ligase; BB144259; FAT; FATP-4; FATP4; fatty acid transport protein 4; long-chain fatty acid transport protein 4; long-chain-fatty-acid--CoA ligase; solute carrier family 27 member 4; very long-chain acyl-CoA synthetase 4
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39229,692,646 - 29,707,534 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl229,692,646 - 29,707,534 (+)EnsemblGRCm39 Ensembl
GRCm38229,802,634 - 29,817,522 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl229,802,634 - 29,817,522 (+)EnsemblGRCm38mm10GRCm38
MGSCv37229,658,200 - 29,673,042 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36229,624,689 - 29,639,531 (+)NCBIMGSCv36mm8
Celera229,509,747 - 29,524,590 (+)NCBICelera
Cytogenetic Map2BNCBI
cM Map220.64NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-epigallocatechin 3-gallate  (ISO)
1,2-dimethylhydrazine  (EXP)
17beta-estradiol  (ISO)
2,2',4,4',5,5'-hexachlorobiphenyl  (EXP)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-dinitrotoluene  (ISO)
2-hydroxypropanoic acid  (ISO)
3,3',4,4',5-pentachlorobiphenyl  (ISO)
3,4-methylenedioxymethamphetamine  (EXP)
4-amino-2,6-dinitrotoluene  (ISO)
8-Br-cAMP  (ISO)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
benzo[a]pyrene  (EXP)
bis(2-ethylhexyl) phthalate  (EXP)
bisphenol A  (EXP,ISO)
C60 fullerene  (ISO)
chromium(6+)  (EXP)
cisplatin  (ISO)
clofibrate  (EXP)
cobalt dichloride  (ISO)
dextran sulfate  (EXP)
dicrotophos  (ISO)
dioxygen  (EXP,ISO)
dorsomorphin  (ISO)
endosulfan  (ISO)
epoxiconazole  (EXP)
ethanol  (EXP)
fenofibrate  (EXP,ISO)
finasteride  (ISO)
flutamide  (ISO)
folic acid  (EXP)
gentamycin  (ISO)
hydroquinone O-beta-D-glucopyranoside  (ISO)
ivermectin  (ISO)
linalool  (EXP,ISO)
N-methyl-4-phenylpyridinium  (ISO)
N-Nitrosopyrrolidine  (ISO)
nickel atom  (ISO)
nicotinic acid  (ISO)
oleic acid  (EXP)
paracetamol  (EXP,ISO)
PCB138  (ISO)
perfluorohexanesulfonic acid  (EXP)
perfluorooctane-1-sulfonic acid  (EXP,ISO)
perfluorooctanoic acid  (EXP)
pirinixic acid  (EXP)
potassium chromate  (ISO)
rac-lactic acid  (ISO)
resveratrol  (EXP)
SB 431542  (ISO)
sodium arsenite  (ISO)
sodium fluoride  (EXP)
sulforaphane  (EXP)
sulindac  (ISO)
thioacetamide  (ISO)
titanium dioxide  (EXP)
trichloroethene  (ISO)
tungsten  (EXP)
valproic acid  (EXP,ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
abnormal breathing pattern  (IAGP)
abnormal dermal layer morphology  (IAGP)
abnormal digestive system morphology  (IAGP)
abnormal epidermal layer morphology  (IAGP)
abnormal epidermal-dermal junction morphology  (IAGP)
abnormal epidermis stratum corneum morphology  (IAGP)
abnormal epidermis stratum spinosum morphology  (IAGP)
abnormal facial morphology  (IAGP)
abnormal fluid regulation  (IAGP)
abnormal keratohyalin granule morphology  (IAGP)
abnormal locomotor activation  (IAGP)
abnormal pilosebaceous unit morphology  (IAGP)
abnormal postnatal growth/weight/body size  (IAGP)
abnormal posture  (IAGP)
abnormal pulmonary alveolus morphology  (IAGP)
abnormal respiratory system physiology  (IAGP)
abnormal skin appearance  (IAGP)
abnormal skin condition  (IAGP)
abnormal skin physiology  (IAGP)
abnormal suckling behavior  (IAGP)
absent gastric milk in neonates  (IAGP)
absent suckling reflex  (IAGP)
cyanosis  (IAGP)
decreased body weight  (IAGP)
decreased hair follicle number  (IAGP)
decreased keratohyalin granule size  (IAGP)
decreased locomotor activity  (IAGP)
embryonic lethality, complete penetrance  (IAGP)
epidermal necrosis  (IAGP)
herniated abdominal wall  (IAGP)
hyperkeratosis  (IAGP)
impaired skin barrier function  (IAGP)
increased keratinocyte proliferation  (IAGP)
joint contracture  (IAGP)
micrognathia  (IAGP)
neonatal lethality, complete penetrance  (IAGP)
parakeratosis  (IAGP)
preweaning lethality, complete penetrance  (IEA)
protruding tongue  (IAGP)
respiratory distress  (IAGP)
scaly skin  (IAGP)
shiny skin  (IAGP)
sparse hair  (IAGP)
thick epidermis  (IAGP)
thick pulmonary interalveolar septum  (IAGP)
thick skin  (IAGP)
tight skin  (IAGP)
References

References - curated
# Reference Title Reference Citation
1. [The expression and the significance of L-FABP and FATP4 in the development of nonalcoholic fatty liver disease in rats] Feng AJ and Chen DF, Zhonghua Gan Zang Bing Za Zhi. 2005 Oct;13(10):776-9.
2. Expression of fatty-acid-handling proteins in human adipose tissue in relation to obesity and insulin resistance. Gertow K, etal., Diabetologia. 2004 Jun;47(6):1118-25. Epub 2004 May 28.
3. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
4. MGDs mouse GO annotations MGD data from the GO Consortium
5. MGD IEA MGD IEA
6. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
7. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
8. Mouse MP Annotation Import Pipeline RGD automated import pipeline
9. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
10. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:9671728   PMID:10349636   PMID:10518211   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11404000   PMID:12477932   PMID:12697906   PMID:12821645   PMID:14512415   PMID:14610273  
PMID:14681479   PMID:15048813   PMID:15464426   PMID:15489334   PMID:15496455   PMID:15653672   PMID:15699031   PMID:15782199   PMID:16141072   PMID:16141073   PMID:16354187   PMID:16354193  
PMID:17062637   PMID:17401141   PMID:17463056   PMID:17522045   PMID:18258213   PMID:18502258   PMID:18507503   PMID:18843142   PMID:20513444   PMID:21267068   PMID:21750264   PMID:21808061  
PMID:21873635   PMID:22028793   PMID:22871340   PMID:23024797   PMID:23226340   PMID:23271751   PMID:23341629   PMID:23407971   PMID:23676500   PMID:24503477   PMID:25044020   PMID:25122651  
PMID:25184958   PMID:25662615   PMID:28369476   PMID:28378742   PMID:29701266   PMID:30497809   PMID:30550785   PMID:31519952   PMID:31974308   PMID:32554809   PMID:32868338   PMID:33257550  
PMID:34255829   PMID:34813948   PMID:34850819   PMID:35478964  


Genomics

Comparative Map Data
Slc27a4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39229,692,646 - 29,707,534 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl229,692,646 - 29,707,534 (+)EnsemblGRCm39 Ensembl
GRCm38229,802,634 - 29,817,522 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl229,802,634 - 29,817,522 (+)EnsemblGRCm38mm10GRCm38
MGSCv37229,658,200 - 29,673,042 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36229,624,689 - 29,639,531 (+)NCBIMGSCv36mm8
Celera229,509,747 - 29,524,590 (+)NCBICelera
Cytogenetic Map2BNCBI
cM Map220.64NCBI
SLC27A4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh389128,340,527 - 128,361,470 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl9128,340,527 - 128,361,470 (+)EnsemblGRCh38hg38GRCh38
GRCh379131,102,806 - 131,123,749 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 369130,142,661 - 130,163,323 (+)NCBINCBI36Build 36hg18NCBI36
Build 349128,182,393 - 128,203,055NCBI
Celera9101,753,743 - 101,774,653 (+)NCBICelera
Cytogenetic Map9q34.11NCBI
HuRef9100,715,663 - 100,736,574 (+)NCBIHuRef
CHM1_19131,253,875 - 131,274,787 (+)NCBICHM1_1
T2T-CHM13v2.09140,547,629 - 140,568,573 (+)NCBIT2T-CHM13v2.0
Slc27a4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2313,075,022 - 13,087,943 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl313,075,022 - 13,087,943 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx316,149,797 - 16,162,720 (+)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0324,734,758 - 24,747,681 (+)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0322,985,916 - 22,998,946 (+)NCBIRnor_WKY
Rnor_6.038,363,937 - 8,376,858 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl38,363,937 - 8,376,858 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0313,707,126 - 13,720,047 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.438,791,504 - 8,802,884 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.138,790,457 - 8,803,184 (+)NCBI
Celera37,852,688 - 7,865,609 (+)NCBICelera
Cytogenetic Map3p12NCBI
Slc27a4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955570853,849 - 866,383 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955570853,856 - 866,383 (+)NCBIChiLan1.0ChiLan1.0
SLC27A4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.19128,133,365 - 128,151,077 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl9128,133,365 - 128,151,077 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0999,463,338 - 99,483,802 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
SLC27A4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1955,164,106 - 55,177,567 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl955,164,817 - 55,177,511 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha954,357,436 - 54,372,577 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0956,084,580 - 56,099,730 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl956,086,220 - 56,099,724 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1954,844,157 - 54,859,298 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0955,158,426 - 55,173,562 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0955,250,305 - 55,265,445 (-)NCBIUU_Cfam_GSD_1.0
Slc27a4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947196,108,549 - 196,137,225 (+)NCBIHiC_Itri_2
SpeTri2.0NW_00493648715,877,075 - 15,905,752 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC27A4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1268,773,806 - 268,788,731 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11268,773,792 - 268,788,208 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21302,768,102 - 302,778,920 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SLC27A4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1129,769,242 - 9,788,214 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660796,439,879 - 6,467,278 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Slc27a4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247606,529,027 - 6,542,149 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247606,529,028 - 6,542,067 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Position Markers
MARC_31864-31866:1046726005:1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38229,810,938 - 29,811,616UniSTSGRCm38
MGSCv37229,666,458 - 29,667,136UniSTSGRCm37
Celera229,518,004 - 29,518,682UniSTS
Cytogenetic Map2BUniSTS
cM Map219.0UniSTS
BB144259  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38229,817,331 - 29,817,450UniSTSGRCm38
MGSCv37229,672,851 - 29,672,970UniSTSGRCm37
Celera229,524,399 - 29,524,518UniSTS
Cytogenetic Map2BUniSTS
cM Map219.0UniSTS
Whitehead/MRC_RH2477.14UniSTS
Slc27a4  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38229,816,331 - 29,817,279UniSTSGRCm38
MGSCv37229,671,851 - 29,672,799UniSTSGRCm37
Celera229,523,397 - 29,524,345UniSTS
Cytogenetic Map2BUniSTS
cM Map219.0UniSTS
SLC27A4_834  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38229,815,578 - 29,816,448UniSTSGRCm38
MGSCv37229,671,098 - 29,671,968UniSTSGRCm37
Celera229,522,644 - 29,523,514UniSTS
Cytogenetic Map2BUniSTS
cM Map219.0UniSTS


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301769Orgwq2_morgan weight QTL 2 (mouse)Not determined2388712693421651Mouse
1301980Fcsa5_mfemoral cross-sectional area 5 (mouse)Not determined2767911541679261Mouse
1301790Pcfm1_mperiosteal circumference and femur length 1 (mouse)Not determined2823629642236396Mouse
10043876Adip22_madiposity 22 (mouse)Not determined2830805142308240Mouse
1300624Insq7_minsulin QTL 7 (mouse)Not determined2938444643384575Mouse
10755513Amzn4_manatomical modifier of Zfp423 4 (mouse)2938444643384575Mouse
8552707Cia23_mcollagen induced arthritis QTL 23 (mouse)Not determined21212953766556453Mouse
1301641Sbmd2_mspinal bone mineral density 2 (mouse)Not determined21421456748214713Mouse
1357881Estoq1_membryo survival total QTL 1 (mouse)Not determined220897778118894840Mouse
1357454Kidq1_mkidney weight QTL 1 (mouse)Not determined220897778118894840Mouse
1357436Splq1_mspleen weight QTL 1 (mouse)Not determined220897778118894840Mouse
39128209Lwq14_mliver weight QTL 14 (mouse)220897778118894840Mouse
1558899Egq1_mearly growth QTL 1 (mouse)Not determined220897778118894840Mouse
1558966W10q9_mweight 10 weeks QTL 9 (mouse)Not determined220897778118894840Mouse
1558915W3q1_mweight 3 weeks QTL 1 (mouse)Not determined220897778118894840Mouse
1558738W6q1_mweight 6 weeks QTL 1 (mouse)Not determined220897778118894840Mouse
1357681Hrtq1_mheart weight QTL 1 (mouse)Not determined220897778118894840Mouse
1301376Etohc1_methanol consumption 1 (mouse)Not determined22112972555129871Mouse
4141708Pbwg1.2_mpostnatal body weight growth 1.2 (mouse)Not determined2112972555129871Mouse
13463470Tubisq1_mtubulointerstitial injury severity, QTL 1 (mouse)22368914557689269Mouse
1302174Dssc2_mdextran sodium sulfate induced colitis QTL2 (mouse)Not determined224224632148700377Mouse
26884438Sklq12_mskull length QTL 12, 16 week (mouse)22459001254890012Mouse
8552705Cia25_mcollagen induced arthritis 25 (mouse)Not determined22467911533523172Mouse
8552706Cia24_mcollagen induced arthritis QTL 24 (mouse)Not determined22467911533523172Mouse
12792980Fbmd1_mfemoral bone mineral density 1, females only (mouse)22503449245034492Mouse
4142130Pgis2_mproteoglycan induced spondylitis 2 (mouse)Not determined22530805156971811Mouse
12904005Cfq2_mconditioned fear QTL 2 (mouse)22702264256396228Mouse
1300577Capsq1_mcapsaicin sensitivity related QTL 1 (mouse)Not determined22760206084013384Mouse
14746979Manh51_mmandible shape 51 (mouse)22896112962961129Mouse
14746997Mancz2_mmandible centroid size 2 (mouse)22896112962961129Mouse
4141854T2dm2sa_mtype 2 diabetes mellitus 2 in SMXA RI mice (mouse)Not determined229307947148374934Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:982
Count of miRNA genes:523
Interacting mature miRNAs:633
Transcripts:ENSMUST00000080065, ENSMUST00000136444
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_011989 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AF072759 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ251113 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ276492 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK009292 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK033519 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK036919 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK155313 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK155388 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK170377 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK194978 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK196043 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK204002 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK213719 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK215383 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK217473 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK217898 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL845323 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY195604 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC023114 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BX294378 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466542 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CT010312 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000080065   ⟹   ENSMUSP00000078971
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl229,692,646 - 29,707,534 (+)Ensembl
GRCm38.p6 Ensembl229,802,634 - 29,817,522 (+)Ensembl
RefSeq Acc Id: ENSMUST00000136444
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl229,697,010 - 29,700,915 (+)Ensembl
GRCm38.p6 Ensembl229,806,998 - 29,810,903 (+)Ensembl
RefSeq Acc Id: NM_011989   ⟹   NP_036119
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39229,692,646 - 29,707,534 (+)NCBI
GRCm38229,802,634 - 29,817,522 (+)NCBI
MGSCv37229,658,200 - 29,673,042 (+)RGD
Celera229,509,747 - 29,524,590 (+)RGD
cM Map2 ENTREZGENE
Sequence:
Reference Sequences
RefSeq Acc Id: NP_036119   ⟸   NM_011989
- UniProtKB: Q3TD48 (UniProtKB/Swiss-Prot),   Q91VE0 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSMUSP00000078971   ⟸   ENSMUST00000080065
Protein Domains
AMP-binding   AMP-binding_C

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q91VE0-F1-model_v2 AlphaFold Q91VE0 1-643 view protein structure

Promoters
RGD ID:6832746
Promoter ID:MM_KWN:28460
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day3,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6
Transcripts:OTTMUST00000030248
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36229,658,014 - 29,658,514 (+)MPROMDB
RGD ID:6832748
Promoter ID:MM_KWN:28461
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain
Transcripts:OTTMUST00000030249
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36229,662,541 - 29,663,041 (+)MPROMDB
RGD ID:6876840
Promoter ID:EPDNEW_M1871
Type:initiation region
Name:Slc27a4_1
Description:Mus musculus solute carrier family 27 , member 4 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M1872  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38229,802,634 - 29,802,694EPDNEW
RGD ID:6876842
Promoter ID:EPDNEW_M1872
Type:initiation region
Name:Slc27a4_2
Description:Mus musculus solute carrier family 27 , member 4 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M1871  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38229,802,841 - 29,802,901EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1347347 AgrOrtholog
Ensembl Genes ENSMUSG00000059316 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Protein ENSMUSP00000078971 ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000080065 ENTREZGENE, UniProtKB/Swiss-Prot
Gene3D-CATH 3.30.300.30 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.40.50.12780 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro AMP-bd_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  AMP-bd_C_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  AMP-binding_CS UniProtKB/Swiss-Prot
  AMP-dep_Synth/Lig UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  AMP-dep_Synthh-like_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  FATP4 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Lipocalin_CS UniProtKB/Swiss-Prot
KEGG Report mmu:26569 UniProtKB/Swiss-Prot
MGD MGI:1347347 ENTREZGENE
NCBI Gene 26569 ENTREZGENE
PANTHER PTHR43107:SF11 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam AMP-binding UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  AMP-binding_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Slc27a4 PhenoGen
PROSITE AMP_BINDING UniProtKB/Swiss-Prot
UniProt Q3TD48 ENTREZGENE
  Q91VE0 ENTREZGENE
  Q9CV67_MOUSE UniProtKB/TrEMBL
  S27A4_MOUSE UniProtKB/Swiss-Prot
UniProt Secondary O88562 UniProtKB/Swiss-Prot
  Q3TD48 UniProtKB/Swiss-Prot