Rpa1 (replication protein A1) - Rat Genome Database
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Gene: Rpa1 (replication protein A1) Mus musculus
Analyze
Symbol: Rpa1
Name: replication protein A1
RGD ID: 1316542
MGI Page MGI
Description: Exhibits chromatin binding activity. Involved in several processes, including double-strand break repair via homologous recombination; homeostasis of number of cells within a tissue; and in utero embryonic development. Localizes to lateral element and male germ cell nucleus. Is expressed in respiratory system; submandibular gland; testis; and ventricular layer. Orthologous to human RPA1 (replication protein A1); PARTICIPATES IN mismatch repair pathway; nucleotide excision repair pathway; DNA replication pathway; INTERACTS WITH 1,2-dimethylhydrazine; 17alpha-ethynylestradiol; 2,3',4,4',5-Pentachlorobiphenyl.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: 5031405K23Rik; 70kD; 70kDa; AA589576; AW557552; R; replication factor A protein 1; replication protein A 70 kDa DNA-binding subunit; RF; RF-A; RF-A protein 1; RP-A; RP-A p70; Rpa
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391175,191,085 - 75,239,478 (-)NCBIGRCm39mm39
GRCm381175,300,259 - 75,348,454 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1175,298,166 - 75,348,324 (-)EnsemblGRCm38mm10GRCm38
MGSCv371175,113,761 - 75,161,885 (-)NCBIGRCm37mm9NCBIm37
MGSCv361175,116,543 - 75,164,498 (-)NCBImm8
Celera1182,808,378 - 82,856,486 (-)NCBICelera
Cytogenetic Map11B5NCBI
cM Map1145.79NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View
Chloracne  (ISO)

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-schisandrin B  (ISO)
1,2-dimethylhydrazine  (EXP)
17alpha-ethynylestradiol  (EXP)
2,3',4,4',5-Pentachlorobiphenyl  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP)
2,3,7,8-Tetrachlorodibenzofuran  (EXP)
2-hydroxypropanoic acid  (ISO)
4,4'-diaminodiphenylmethane  (EXP)
5-aza-2'-deoxycytidine  (ISO)
AM-251  (ISO)
amphetamine  (ISO)
antirheumatic drug  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
benzo[a]pyrene  (EXP,ISO)
biphenyl-4-amine  (ISO)
bisphenol A  (ISO)
buspirone  (ISO)
butanal  (ISO)
capecitabine  (ISO)
carbamazepine  (ISO)
carbon nanotube  (EXP)
cisplatin  (ISO)
copper(II) sulfate  (ISO)
coumestrol  (ISO)
crocidolite asbestos  (EXP)
cyclophosphamide  (ISO)
cyclosporin A  (ISO)
dibutyl phthalate  (EXP)
diclofenac  (ISO)
doxifluridine  (ISO)
Enterolactone  (ISO)
ethanol  (EXP)
folic acid  (EXP)
folpet  (EXP)
furan  (ISO)
gefitinib  (ISO)
gentamycin  (ISO)
glafenine  (ISO)
glyphosate  (ISO)
hydrogen peroxide  (ISO)
lead(0)  (ISO)
lead(2+)  (ISO)
leflunomide  (ISO)
levofloxacin  (ISO)
menadione  (ISO)
methylmercury chloride  (ISO)
N-(6-acetamidohexyl)acetamide  (EXP)
N-nitrosodiethylamine  (EXP)
nefazodone  (ISO)
nimesulide  (ISO)
ochratoxin A  (ISO)
oxaliplatin  (ISO)
paracetamol  (EXP,ISO)
perfluorooctanoic acid  (ISO)
phenobarbital  (EXP,ISO)
phosphoramide mustard  (ISO)
pirinixic acid  (EXP)
rac-lactic acid  (ISO)
resveratrol  (ISO)
rotenone  (ISO)
sunitinib  (ISO)
tert-butyl hydroperoxide  (ISO)
tetrachloromethane  (EXP,ISO)
topotecan  (ISO)
trichloroethene  (ISO)
trichostatin A  (ISO)
troglitazone  (ISO)
trovafloxacin  (ISO)
uranium atom  (ISO)
valdecoxib  (ISO)
zidovudine  (ISO)

Molecular Pathway Annotations     Click to see Annotation Detail View
References

Additional References at PubMed
PMID:8889548   PMID:9050988   PMID:9182797   PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11544199   PMID:12091911   PMID:12477932   PMID:12520002   PMID:12630518  
PMID:14610273   PMID:15470499   PMID:15489334   PMID:15782199   PMID:15965476   PMID:16006651   PMID:16141072   PMID:16141073   PMID:16420439   PMID:16602821   PMID:16927366   PMID:17141802  
PMID:17696610   PMID:18283110   PMID:18316482   PMID:18799693   PMID:20212136   PMID:20362541   PMID:20362542   PMID:20551173   PMID:21070964   PMID:21113164   PMID:21267068   PMID:21478856  
PMID:21677750   PMID:21743440   PMID:21873635   PMID:22083510   PMID:22164254   PMID:22711701   PMID:22922362   PMID:23042675   PMID:23291097   PMID:24194600   PMID:24204272   PMID:24797475  
PMID:26206133   PMID:26336360   PMID:26370502   PMID:26491943   PMID:26917764   PMID:27626380   PMID:28173122   PMID:28671696   PMID:29091030   PMID:30154456   PMID:30196744   PMID:30272023  
PMID:30457570   PMID:30595499   PMID:30716097   PMID:30760716   PMID:31256246   PMID:31358751   PMID:32098917   PMID:32325033   PMID:32610038   PMID:32968282  


Genomics

Comparative Map Data
Rpa1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391175,191,085 - 75,239,478 (-)NCBIGRCm39mm39
GRCm381175,300,259 - 75,348,454 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1175,298,166 - 75,348,324 (-)EnsemblGRCm38mm10GRCm38
MGSCv371175,113,761 - 75,161,885 (-)NCBIGRCm37mm9NCBIm37
MGSCv361175,116,543 - 75,164,498 (-)NCBImm8
Celera1182,808,378 - 82,856,486 (-)NCBICelera
Cytogenetic Map11B5NCBI
cM Map1145.79NCBI
RPA1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl171,829,702 - 1,900,082 (+)EnsemblGRCh38hg38GRCh38
GRCh38171,830,005 - 1,900,082 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh37171,733,299 - 1,803,376 (+)NCBIGRCh37GRCh37hg19GRCh37
GRCh37171,733,273 - 1,802,848 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36171,680,095 - 1,748,120 (+)NCBINCBI36hg18NCBI36
Build 34171,680,094 - 1,748,119NCBI
Celera171,749,843 - 1,819,455 (+)NCBI
Cytogenetic Map17p13.3NCBI
HuRef171,629,684 - 1,699,337 (+)NCBIHuRef
CHM1_1171,742,032 - 1,811,637 (+)NCBICHM1_1
Rpa1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21060,148,869 - 60,199,999 (-)NCBI
Rnor_6.0 Ensembl1062,140,419 - 62,191,512 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01062,140,419 - 62,191,518 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01061,854,541 - 61,904,617 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41062,613,169 - 62,656,565 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11062,626,791 - 62,670,188 (-)NCBI
Celera1059,179,824 - 59,222,962 (-)NCBICelera
Cytogenetic Map10q24NCBI
Rpa1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554811,304,035 - 1,361,806 (-)NCBIChiLan1.0ChiLan1.0
RPA1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1171,705,373 - 1,775,596 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl171,705,380 - 1,775,596 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0171,813,610 - 1,886,093 (+)NCBIMhudiblu_PPA_v0panPan3
RPA1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl945,958,619 - 46,034,328 (+)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.1945,958,566 - 46,034,850 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Rpa1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_0049365387,941,074 - 7,997,062 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RPA1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1248,009,724 - 48,048,734 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11248,009,652 - 48,048,744 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21249,862,650 - 49,901,712 (+)NCBISscrofa10.2Sscrofa10.2susScr3
RPA1
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1161,470,375 - 1,537,603 (+)NCBI
ChlSab1.1 Ensembl161,470,474 - 1,539,246 (+)Ensembl
Rpa1
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247864,547,889 - 4,604,605 (+)NCBI

Position Markers
AW557552  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381175,300,848 - 75,300,943UniSTSGRCm38
MGSCv371175,114,350 - 75,114,445UniSTSGRCm37
Celera1182,808,967 - 82,809,062UniSTS
Cytogenetic Map11B5UniSTS
cM Map1144.0UniSTS
RH125008  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381175,312,340 - 75,312,442UniSTSGRCm38
MGSCv371175,125,842 - 75,125,944UniSTSGRCm37
Celera1182,820,459 - 82,820,561UniSTS
Cytogenetic Map11B5UniSTS
cM Map1144.0UniSTS
D11Bhm21  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381175,322,393 - 75,322,502UniSTSGRCm38
MGSCv371175,135,895 - 75,136,004UniSTSGRCm37
Celera1182,830,512 - 82,830,621UniSTS
Cytogenetic Map11B5UniSTS
cM Map1144.18UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
13208559Wght10_mweight 10 (mouse)11400000089000000Mouse
13208558Lgth12_mbody length 12 (mouse)11400000095000000Mouse
1300905Scc6_mcolon tumor susceptibility 6 (mouse)Not determined11693027789128908Mouse
1357859Lvrq7_mliver weight QTL 7 (mouse)Not determined1112318637118131898Mouse
39128214Lwq20_mliver weight QTL 20 (mouse)1112318637118131898Mouse
4141894Nidd6k_mNidd6 on KK-A (mouse)Not determined1917420497007000Mouse
10412246Dfs2_mdental fluorosis suseptibility 2 (mouse)Not determined112185736495990405Mouse
13208569Bmiq10_mbody mass index QTL 10 (mouse)113600000085000000Mouse
1301328Mol4_mmodifier of LPS-response 4 (mouse)Not determined113639175083590530Mouse
11532698Sluc36a_msusceptibility to lung cancer 36a (mouse)114236579176365904Mouse
11532699Sluc36b_msusceptibility to lung cancer 36b (mouse)114236579176365904Mouse
4142300Ctrq3_mC. trachomatis resistance QTL 3 (mouse)Not determined114473921176963931Mouse
4141367Inf1_macute ozone induced inflammation (mouse)Not determined44739211113167183Mouse
4141000Nidd3_mnon-insulin-dependent diabetes mellitus 3 (mouse)Not determined4515120179151308Mouse
1302021Nidd1n_mnon-insulin-dependent diabetes mellitus 1 in NSY (mouse)Not determined114527504680087498Mouse
1357878Mastr_mmodifier of astrocytoma (mouse)Not determined114581775489927907Mouse
1300765Bbaa4_mB.burgdorferi-associated arthritis 4 (mouse)Not determined114629434180294436Mouse
1301988Bmd11_mbone mineral density 11 (mouse)Not determined114642858180428696Mouse
1301830Ssta4_msusceptibility to Salmonella typhimurium antigens 4 (mouse)Not determined115018736584187585Mouse
13524840Ppiq9a_mprepulse inhibition QTL 9a (mouse)115260355986603559Mouse
1300774Pgia7_mproteoglycan induced arthritis 7 (mouse)Not determined115349976287499911Mouse
4141830Pregq1_mpregnancy QTL 1 (mouse)Not determined115423592683842826Mouse
4142121Tmc1m2_mTmc1 modifier 2 (mouse)Not determined1156973201114267131Mouse
1300664Etohcta9_methanol conditioned taste aversion 9 (mouse)Not determined115786383491863932Mouse
1300924Ity2_mimmunity to S. typhimurium 2 (mouse)Not determined15861720487804412Mouse
4141982Skts-fp2_mskin tumor susceptibility in FVB and PWK 2 (mouse)Not determined5882844085175703Mouse
1301987Pid3_mprior incubation determinant 3 (mouse)Not determined116179599488808902Mouse
1301319Dautb4_mdopamine uptake transporter binding 4 (mouse)Not determined116226517996265327Mouse
27226730Tibmd1_mtibia midshaft diameter 1, 5 week (mouse)1162700000109500000Mouse
1301999Lmr15_mleishmaniasis resistance 15 (mouse)Not determined116342858181939647Mouse
10044004Stzid3_mstreptozotocin induced diabetes susceptibility 3 (mouse)Not determined116342858194173092Mouse
11039501Ltpr6a_mLeishmania tropica response 6a (mouse)116493951098939647Mouse
11039502Ltpr6b_mLeishmania tropica response 6b (mouse)116493951098939647Mouse
11039515Ltpr6_mLeishmania tropica response 6 (mouse)116493951098939647Mouse
1301546Pcir2_mperiosteal circumference 2 (mouse)Not determined1166842594100842826Mouse
1357766Si5lq6_mserum IGFBP-5 level QTL 6 (mouse)Not determined1166842594100842826Mouse
4141012Femwf6_mfemur work to failure 6 (mouse)Not determined66842594100842826Mouse
1301833Tbbmd5_mtotal body bone mineral density 5 (mouse)Not determined1166842594100842826Mouse
1300784Prdt3_mprion disease incubation time 3 (mouse)Not determined1166842594100842826Mouse
1300628Lgth6_mbody length 6 (mouse)Not determined1166842594100842826Mouse
4142316Ity2b_mimmunity to S. typhimurium 2b (mouse)Not determined116718736579923086Mouse
27226783Tibl5_mtibia length 5, 5 week (mouse)1168300000102000000Mouse
1300651Pcyts3_mplasmacytoma susceptibility 3 (mouse)Not determined1170800372104800540Mouse
1301681Sle13_msystematic lupus erythematosus susceptibility 13 (mouse)Not determined1170800372104800540Mouse
1558812Rafar_mretinoic acid induced forelimb autopod reduction (mouse)Not determined1170800372104800540Mouse
4141339Nilac2_mnicotine induced locomotor activity 2 (mouse)Not determined1170800372104800540Mouse
1301404Sbmd4_mspinal bone mineral density 4 (mouse)Not determined1172128823106128908Mouse
1301078Alcp2_malcohol preference locus 2 (mouse)Not determined117231897084840636Mouse
1301310Tmevd5_mTheiler's murine encephalomyelitis virus induced demyelinating disease susceptibility 5 (mouse)Not determined1172835299106835463Mouse
4142348Pstc2_mperiosteal circumference 2 (mouse)Not determined1172927789106927907Mouse
10043866Adip19_madiposity 19 (mouse)Not determined1172927789106927907Mouse
12903994Opfaq3_mopen field activity QTL 3 (mouse)117384671582178599Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1484
Count of miRNA genes:688
Interacting mature miRNAs:854
Transcripts:ENSMUST00000000767, ENSMUST00000092907, ENSMUST00000135770, ENSMUST00000149365, ENSMUST00000154894
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001164223 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_026653 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006534051 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AK014298 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK019864 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK035084 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK148035 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK150785 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK151590 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK152296 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK153107 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK153144 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK165316 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK165944 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK167598 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK168400 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK169599 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK177196 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK177907 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK178009 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK178914 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK179745 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK179927 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK180105 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK184031 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK184178 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK184637 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK185517 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK187897 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK189517 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK191496 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK191807 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK192557 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK194307 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK194339 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK194722 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK196134 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK196886 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK196893 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK197921 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK197958 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK198762 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK199793 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK199865 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK199942 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK201262 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK202480 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK202570 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK202801 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK203011 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK203654 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK204019 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK204740 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK204900 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK204963 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK205283 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK206408 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK206421 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK206519 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK206963 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK206973 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK207022 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK207092 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK207399 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK210768 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK211226 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK211282 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK212495 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK213326 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK214358 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK214387 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK215767 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK216001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK216329 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK216701 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK216917 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK216964 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK217077 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK217218 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK217322 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK217357 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK218266 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK218731 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK219356 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL603834 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC019119 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BE981198 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466596 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CJ078143 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CJ086677 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000000767   ⟹   ENSMUSP00000000767
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1175,300,350 - 75,348,310 (-)Ensembl
RefSeq Acc Id: ENSMUST00000092907   ⟹   ENSMUSP00000090585
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1175,298,166 - 75,348,324 (-)Ensembl
RefSeq Acc Id: ENSMUST00000135770
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1175,301,305 - 75,342,188 (-)Ensembl
RefSeq Acc Id: ENSMUST00000149365
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1175,341,978 - 75,348,293 (-)Ensembl
RefSeq Acc Id: ENSMUST00000154894
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1175,316,040 - 75,348,295 (-)Ensembl
RefSeq Acc Id: NM_001164223   ⟹   NP_001157695
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391175,191,085 - 75,239,209 (-)NCBI
GRCm381175,300,259 - 75,348,383 (-)ENTREZGENE
MGSCv371175,113,761 - 75,161,885 (-)RGD
Celera1182,808,378 - 82,856,486 (-)RGD
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_026653   ⟹   NP_080929
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391175,191,085 - 75,239,209 (-)NCBI
GRCm381175,300,259 - 75,348,383 (-)ENTREZGENE
MGSCv371175,113,761 - 75,161,885 (-)RGD
Celera1182,808,378 - 82,856,486 (-)RGD
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006534051   ⟹   XP_006534114
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391175,191,174 - 75,239,478 (-)NCBI
GRCm381175,300,348 - 75,348,454 (-)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: NP_080929   ⟸   NM_026653
- Peptide Label: isoform 2
- UniProtKB: Q8VEE4 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001157695   ⟸   NM_001164223
- Peptide Label: isoform 1
- UniProtKB: Q8VEE4 (UniProtKB/Swiss-Prot),   Q3U8B3 (UniProtKB/TrEMBL),   Q5SWN2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006534114   ⟸   XM_006534051
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: ENSMUSP00000000767   ⟸   ENSMUST00000000767
RefSeq Acc Id: ENSMUSP00000090585   ⟸   ENSMUST00000092907
Protein Domains
OB   Rep-A_N   Rep_fac-A_C   REPA_OB_2

Promoters
RGD ID:6822180
Promoter ID:MM_KWN:8496
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day2,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   Spleen
Transcripts:NM_001102611,   NM_001164223,   OTTMUST00000013977,   OTTMUST00000013979,   OTTMUST00000013980,   UC007KDL.1,   UC007KDN.1,   UC007KDO.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361175,161,686 - 75,162,187 (+)MPROMDB
RGD ID:8675528
Promoter ID:EPDNEW_M15795
Type:initiation region
Name:Rpa1_1
Description:Mus musculus replication protein A1 , transcript variant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381175,348,310 - 75,348,370EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1915525 AgrOrtholog
Ensembl Genes ENSMUSG00000000751 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000000767 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUSP00000090585 ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000000767 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUST00000092907 ENTREZGENE, UniProtKB/Swiss-Prot
InterPro NA-bd_OB-fold UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  NA-bd_OB_tRNA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Rep_factor-A_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Rep_factor-A_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  REPA_OB_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Rfa1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:68275 UniProtKB/Swiss-Prot
MGD MGI:1915525 ENTREZGENE
NCBI Gene 68275 ENTREZGENE
Pfam Rep-A_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Rep_fac-A_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  REPA_OB_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  tRNA_anti-codon UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Rpa1 PhenoGen
Superfamily-SCOP SSF50249 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
TIGRFAMs rpa1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt Q3U8B3 ENTREZGENE, UniProtKB/TrEMBL
  Q5SWN2 ENTREZGENE, UniProtKB/TrEMBL
  Q8VEE4 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary Q3TEJ8 UniProtKB/Swiss-Prot