Brd9 (bromodomain containing 9) - Rat Genome Database

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Gene: Brd9 (bromodomain containing 9) Mus musculus
Analyze
Symbol: Brd9
Name: bromodomain containing 9
RGD ID: 1316512
MGI Page MGI
Description: Predicted to enable lysine-acetylated histone binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within chromatin organization. Part of SWI/SNF complex. Is expressed in central nervous system; female reproductive system; and urinary system. Orthologous to human BRD9 (bromodomain containing 9).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: AL022779; bromodomain-containing protein 9
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391374,085,920 - 74,109,014 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1374,085,930 - 74,109,014 (+)EnsemblGRCm39 Ensembl
GRCm381373,937,801 - 73,960,895 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1373,937,811 - 73,960,895 (+)EnsemblGRCm38mm10GRCm38
MGSCv371374,075,286 - 74,098,343 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361374,403,882 - 74,426,891 (+)NCBIMGSCv36mm8
Celera1376,267,420 - 76,290,477 (+)NCBICelera
Cytogenetic Map13C1NCBI
cM Map1340.15NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
chromatin  (NAS)
GBAF complex  (NAS)
nucleoplasm  (ISO)
nucleus  (IBA,ISO)
SWI/SNF complex  (IDA,ISO)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. ATP-dependent chromatin remodeling: genetics, genomics and mechanisms. Hargreaves DC and Crabtree GR, Cell Res. 2011 Mar;21(3):396-420. doi: 10.1038/cr.2011.32. Epub 2011 Mar 1.
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:7671812   PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:12520002   PMID:14610273   PMID:15489334   PMID:15618518   PMID:16141072  
PMID:16141073   PMID:18287559   PMID:19279220   PMID:21267068   PMID:21873635   PMID:22988430   PMID:23644491   PMID:29374058   PMID:30196744   PMID:30510198   PMID:32640256   PMID:34321999  
PMID:36112085   PMID:36918560  


Genomics

Comparative Map Data
Brd9
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391374,085,920 - 74,109,014 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1374,085,930 - 74,109,014 (+)EnsemblGRCm39 Ensembl
GRCm381373,937,801 - 73,960,895 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1373,937,811 - 73,960,895 (+)EnsemblGRCm38mm10GRCm38
MGSCv371374,075,286 - 74,098,343 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361374,403,882 - 74,426,891 (+)NCBIMGSCv36mm8
Celera1376,267,420 - 76,290,477 (+)NCBICelera
Cytogenetic Map13C1NCBI
cM Map1340.15NCBI
BRD9
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385863,741 - 892,801 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5850,291 - 892,801 (-)EnsemblGRCh38hg38GRCh38
GRCh375863,850 - 892,916 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 365916,856 - 945,915 (-)NCBINCBI36Build 36hg18NCBI36
Build 345916,855 - 945,915NCBI
Celera5905,000 - 934,089 (-)NCBICelera
Cytogenetic Map5p15.33NCBI
HuRef5849,539 - 878,480 (-)NCBIHuRef
CHM1_15863,562 - 892,651 (-)NCBICHM1_1
T2T-CHM13v2.05769,793 - 798,853 (-)NCBIT2T-CHM13v2.0
Brd9
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8131,158,546 - 31,185,812 (-)NCBIGRCr8
mRatBN7.2129,329,981 - 29,357,285 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl129,329,985 - 29,357,016 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx129,131,492 - 29,158,404 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.011,670,099 - 1,694,406 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0129,332,117 - 29,359,032 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0131,939,612 - 31,968,120 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl131,939,585 - 31,967,915 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0133,363,870 - 33,392,557 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4130,136,722 - 30,165,207 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1130,139,668 - 30,168,125 (-)NCBI
Celera127,979,163 - 28,005,985 (-)NCBICelera
Cytogenetic Map1p11NCBI
Brd9
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955504415,904 - 434,142 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955504416,145 - 434,132 (-)NCBIChiLan1.0ChiLan1.0
LOC106634368
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21101,224,044 - 101,256,647 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11100,811,456 - 100,845,295 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01123,920,801 - 123,953,480 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
BRD9
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13411,541,005 - 11,564,760 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3411,540,481 - 11,564,536 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3416,050,294 - 16,079,372 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03411,441,128 - 11,470,285 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3411,441,122 - 11,470,245 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13411,491,827 - 11,520,832 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03411,471,570 - 11,500,766 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03411,682,516 - 11,711,639 (+)NCBIUU_Cfam_GSD_1.0
LOC101956427
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213244,582,573 - 244,602,686 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936815748,274 - 763,480 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936815748,112 - 763,971 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
BRD9
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1679,473,745 - 79,492,635 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11679,473,750 - 79,492,638 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
BRD9
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.14711,862 - 737,174 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl4711,375 - 737,094 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605435,262,826 - 35,288,600 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Brd9
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624751421,154 - 439,544 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624751421,945 - 439,146 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Brd9
690 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:197
Count of miRNA genes:165
Interacting mature miRNAs:181
Transcripts:ENSMUST00000099384
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
26884393Humsd7_mhumerus midshaft diameter 7, 16 week (mouse)13395000076048119Mouse
4142147Mvwf4_mmodifier of von Willebrand factor 4 (mouse)Not determined20477612112898424Mouse
10412235Scgq5_mspontaneous crescentic glomerulonephritis QTL 5 (mouse)Not determined133606090896239162Mouse
15039353Nmrs35_mNAFLD-associated magnetic resonance shift 35 (mouse)134058825374588253Mouse
1300668Pas10_mpulmonary adenoma susceptibility 10 (mouse)Not determined134148904275489158Mouse
4142331Bxs6_mBXSB/MpJ autoimmune nephritis 6 (mouse)Not determined4521044283744746Mouse
10412109Bxs7_mBXSB/MpJ autoimmune nephritis 7 (mouse)Not determined134521044283744746Mouse
4142372Moo2_mmodifier of Odc2 (mouse)Not determinedX5031841184318559Mouse
1301666Eae13_msusceptibility to experimental allergic encephalomyelitis 13 (mouse)Not determined135031841184318559Mouse
1300573Elsgp2_melevated serum gp70 2 (mouse)Not determined135061682884617027Mouse
14746975Manh74_mmandible shape 74 (mouse)135247726986477269Mouse
1302073Pgct1_mprimordial germ cell tumor locus 1 (mouse)Not determined135382078387820897Mouse
1357563Bmch6_mbone mechanical trait 6 (mouse)Not determined135538498089385140Mouse
4142314Tailaq3_mtail length adjusted QTL 3 (mouse)Not determined55720354112431103Mouse
4140959W10q17_mweight 10 weeks QTL 17 (mouse)Not determined55720354112431103Mouse
4141992W6q16_mweight 6 weeks QTL 16 (mouse)Not determined55720354112431103Mouse
4142241Tailq3_mtail length QTL 3 (mouse)Not determined55720354112431103Mouse
1558850Sgp3_mserum gp70 production 3 (mouse)Not determined135647045676971314Mouse
10402414Sgp5_mserum gp70 production 5 (mouse)Not determined1356470456105422186Mouse
1357553Cia28_mcollagen induced arthritis 28 (mouse)Not determined135662924996239162Mouse
10412163Wra1_mwheel running activity 1 (mouse)Not determined135913260093132738Mouse
1300941Skl6_mskeletal size (tail length) 6 (mouse)Not determined136425082198250945Mouse
1301949Skull20_mskull morphology 20 (mouse)Not determined136425082198250945Mouse
1301445Listr2_mlisteriosis resistance 2 (mouse)Not determined1366744601100744746Mouse
1301593Heal8_mwound healing/regeneration 8 (mouse)Not determined1368053999102054119Mouse
14696726Kidrq3_mkidney weight, right QTL 3 (mouse)1368217066102217066Mouse
14747007Mancz11_mmandible centroid size 11 (mouse)1370111284104111284Mouse

Markers in Region
RH125347  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381373,960,536 - 73,960,728UniSTSGRCm38
MGSCv371374,097,984 - 74,098,176UniSTSGRCm37
Celera1376,290,118 - 76,290,310UniSTS
Cytogenetic Map13C1UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001024508 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001308041 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001378947 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001378948 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006517029 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006517030 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017315340 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030247103 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030247105 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030247107 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036157810 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036157811 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036157812 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036157813 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036157814 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036157815 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036157816 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036157817 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AK028174 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK142152 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK154645 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK163238 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC031484 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC044769 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC046438 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC047372 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC057597 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC089379 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY035489 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466563 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CT010471 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000099384   ⟹   ENSMUSP00000096982
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1374,085,957 - 74,109,014 (+)Ensembl
GRCm38.p6 Ensembl1373,937,838 - 73,960,895 (+)Ensembl
RefSeq Acc Id: ENSMUST00000220488
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1374,085,976 - 74,108,932 (+)Ensembl
GRCm38.p6 Ensembl1373,937,857 - 73,960,813 (+)Ensembl
RefSeq Acc Id: ENSMUST00000220968
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1374,093,679 - 74,098,253 (+)Ensembl
GRCm38.p6 Ensembl1373,945,560 - 73,950,134 (+)Ensembl
RefSeq Acc Id: ENSMUST00000221324
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1374,099,306 - 74,108,690 (+)Ensembl
GRCm38.p6 Ensembl1373,951,187 - 73,960,571 (+)Ensembl
RefSeq Acc Id: ENSMUST00000222191
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1374,085,940 - 74,108,936 (+)Ensembl
GRCm38.p6 Ensembl1373,937,821 - 73,960,817 (+)Ensembl
RefSeq Acc Id: ENSMUST00000222399   ⟹   ENSMUSP00000152390
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1374,085,930 - 74,109,013 (+)Ensembl
GRCm38.p6 Ensembl1373,937,811 - 73,960,894 (+)Ensembl
RefSeq Acc Id: ENSMUST00000222749   ⟹   ENSMUSP00000152257
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1374,086,271 - 74,088,906 (+)Ensembl
GRCm38.p6 Ensembl1373,938,152 - 73,940,787 (+)Ensembl
RefSeq Acc Id: ENSMUST00000223063
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1374,086,229 - 74,087,270 (+)Ensembl
GRCm38.p6 Ensembl1373,938,110 - 73,939,151 (+)Ensembl
RefSeq Acc Id: ENSMUST00000223238   ⟹   ENSMUSP00000152627
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1374,088,835 - 74,095,885 (+)Ensembl
GRCm38.p6 Ensembl1373,940,716 - 73,947,766 (+)Ensembl
RefSeq Acc Id: ENSMUST00000223446
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1374,092,015 - 74,109,008 (+)Ensembl
GRCm38.p6 Ensembl1373,943,896 - 73,960,889 (+)Ensembl
RefSeq Acc Id: ENSMUST00000223455
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1374,086,211 - 74,095,873 (+)Ensembl
GRCm38.p6 Ensembl1373,938,092 - 73,947,754 (+)Ensembl
RefSeq Acc Id: ENSMUST00000223525   ⟹   ENSMUSP00000152308
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1374,086,757 - 74,099,688 (+)Ensembl
GRCm38.p6 Ensembl1373,938,638 - 73,951,569 (+)Ensembl
RefSeq Acc Id: NM_001024508   ⟹   NP_001019679
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391374,085,947 - 74,109,014 (+)NCBI
GRCm381373,937,811 - 73,960,889 (+)NCBI
MGSCv371374,075,286 - 74,098,343 (+)RGD
Celera1376,267,420 - 76,290,477 (+)RGD
cM Map13 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001308041   ⟹   NP_001294970
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391374,085,947 - 74,109,014 (+)NCBI
GRCm381373,937,811 - 73,960,889 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001378947   ⟹   NP_001365876
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391374,085,947 - 74,109,014 (+)NCBI
GRCm381373,937,828 - 73,960,895 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001378948   ⟹   NP_001365877
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391374,085,947 - 74,109,014 (+)NCBI
GRCm381373,937,828 - 73,960,895 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006517029   ⟹   XP_006517092
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391374,086,553 - 74,109,014 (+)NCBI
GRCm381373,938,434 - 73,960,895 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006517030   ⟹   XP_006517093
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391374,086,553 - 74,109,014 (+)NCBI
GRCm381373,938,434 - 73,960,895 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017315340   ⟹   XP_017170829
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391374,085,972 - 74,109,014 (+)NCBI
GRCm381373,937,853 - 73,960,895 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030247103   ⟹   XP_030102963
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391374,085,925 - 74,101,480 (+)NCBI
GRCm381373,937,806 - 73,953,049 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030247105   ⟹   XP_030102965
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391374,085,920 - 74,101,480 (+)NCBI
GRCm381373,937,801 - 73,953,361 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030247107   ⟹   XP_030102967
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391374,085,972 - 74,109,014 (+)NCBI
GRCm381373,937,853 - 73,960,895 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036157810   ⟹   XP_036013703
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391374,085,972 - 74,109,014 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036157811   ⟹   XP_036013704
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391374,085,981 - 74,109,014 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036157812   ⟹   XP_036013705
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391374,085,972 - 74,109,014 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036157813   ⟹   XP_036013706
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391374,085,962 - 74,109,014 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036157814   ⟹   XP_036013707
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391374,085,972 - 74,109,014 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036157815   ⟹   XP_036013708
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391374,086,004 - 74,109,014 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036157816   ⟹   XP_036013709
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391374,085,972 - 74,109,014 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036157817   ⟹   XP_036013710
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391374,085,981 - 74,109,014 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001019679 (Get FASTA)   NCBI Sequence Viewer  
  NP_001294970 (Get FASTA)   NCBI Sequence Viewer  
  NP_001365876 (Get FASTA)   NCBI Sequence Viewer  
  NP_001365877 (Get FASTA)   NCBI Sequence Viewer  
  XP_006517092 (Get FASTA)   NCBI Sequence Viewer  
  XP_006517093 (Get FASTA)   NCBI Sequence Viewer  
  XP_017170829 (Get FASTA)   NCBI Sequence Viewer  
  XP_030102963 (Get FASTA)   NCBI Sequence Viewer  
  XP_030102965 (Get FASTA)   NCBI Sequence Viewer  
  XP_030102967 (Get FASTA)   NCBI Sequence Viewer  
  XP_036013703 (Get FASTA)   NCBI Sequence Viewer  
  XP_036013704 (Get FASTA)   NCBI Sequence Viewer  
  XP_036013705 (Get FASTA)   NCBI Sequence Viewer  
  XP_036013706 (Get FASTA)   NCBI Sequence Viewer  
  XP_036013707 (Get FASTA)   NCBI Sequence Viewer  
  XP_036013708 (Get FASTA)   NCBI Sequence Viewer  
  XP_036013709 (Get FASTA)   NCBI Sequence Viewer  
  XP_036013710 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH31484 (Get FASTA)   NCBI Sequence Viewer  
  AAH46438 (Get FASTA)   NCBI Sequence Viewer  
  BAE24949 (Get FASTA)   NCBI Sequence Viewer  
  BAE32736 (Get FASTA)   NCBI Sequence Viewer  
  EDL37077 (Get FASTA)   NCBI Sequence Viewer  
  EDL37078 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000096982
  ENSMUSP00000096982.3
  ENSMUSP00000152257.2
  ENSMUSP00000152308.2
  ENSMUSP00000152390
  ENSMUSP00000152390.2
  ENSMUSP00000152627.2
GenBank Protein Q3UQU0 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: NP_001019679   ⟸   NM_001024508
- Peptide Label: isoform 1
- UniProtKB: A0A0R4J175 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006517092   ⟸   XM_006517029
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_006517093   ⟸   XM_006517030
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: NP_001294970   ⟸   NM_001308041
- Peptide Label: isoform 2
- UniProtKB: Q5FWH1 (UniProtKB/Swiss-Prot),   Q0P669 (UniProtKB/Swiss-Prot),   Q811F7 (UniProtKB/Swiss-Prot),   Q3UQU0 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_017170829   ⟸   XM_017315340
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_030102965   ⟸   XM_030247105
- Peptide Label: isoform X2
RefSeq Acc Id: XP_030102963   ⟸   XM_030247103
- Peptide Label: isoform X1
RefSeq Acc Id: XP_030102967   ⟸   XM_030247107
- Peptide Label: isoform X5
RefSeq Acc Id: NP_001365876   ⟸   NM_001378947
- Peptide Label: isoform 3
RefSeq Acc Id: NP_001365877   ⟸   NM_001378948
- Peptide Label: isoform 4
RefSeq Acc Id: ENSMUSP00000152627   ⟸   ENSMUST00000223238
RefSeq Acc Id: ENSMUSP00000152308   ⟸   ENSMUST00000223525
RefSeq Acc Id: ENSMUSP00000152257   ⟸   ENSMUST00000222749
RefSeq Acc Id: ENSMUSP00000152390   ⟸   ENSMUST00000222399
RefSeq Acc Id: ENSMUSP00000096982   ⟸   ENSMUST00000099384
RefSeq Acc Id: XP_036013706   ⟸   XM_036157813
- Peptide Label: isoform X6
RefSeq Acc Id: XP_036013707   ⟸   XM_036157814
- Peptide Label: isoform X7
RefSeq Acc Id: XP_036013709   ⟸   XM_036157816
- Peptide Label: isoform X8
RefSeq Acc Id: XP_036013703   ⟸   XM_036157810
- Peptide Label: isoform X4
RefSeq Acc Id: XP_036013705   ⟸   XM_036157812
- Peptide Label: isoform X5
RefSeq Acc Id: XP_036013710   ⟸   XM_036157817
- Peptide Label: isoform X8
RefSeq Acc Id: XP_036013704   ⟸   XM_036157811
- Peptide Label: isoform X4
RefSeq Acc Id: XP_036013708   ⟸   XM_036157815
- Peptide Label: isoform X7
Protein Domains
Bromo

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q3UQU0-F1-model_v2 AlphaFold Q3UQU0 1-596 view protein structure

Promoters
RGD ID:8680818
Promoter ID:EPDNEW_M18440
Type:initiation region
Name:Brd9_1
Description:Mus musculus bromodomain containing 9 , transcript variant 2,mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381373,937,828 - 73,937,888EPDNEW
RGD ID:6823743
Promoter ID:MM_KWN:14672
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day3,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6
Transcripts:ENSMUST00000022053,   NM_001024508,   UC007REK.1,   UC007REL.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361374,075,019 - 74,075,519 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2145317 AgrOrtholog
Ensembl Genes ENSMUSG00000057649 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000099384 ENTREZGENE
  ENSMUST00000099384.4 UniProtKB/TrEMBL
  ENSMUST00000220488 ENTREZGENE
  ENSMUST00000222191 ENTREZGENE
  ENSMUST00000222399 ENTREZGENE
  ENSMUST00000222399.2 UniProtKB/Swiss-Prot
  ENSMUST00000222749.2 UniProtKB/TrEMBL
  ENSMUST00000223238.2 UniProtKB/TrEMBL
  ENSMUST00000223525.2 UniProtKB/TrEMBL
Gene3D-CATH 1.20.920.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Bromodomain UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Bromodomain-like_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  DUF3512 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:105246 UniProtKB/Swiss-Prot
MGD MGI:2145317 ENTREZGENE
NCBI Gene 105246 ENTREZGENE
PANTHER BROMODOMAIN CONTAINING PROTEIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  BROMODOMAIN-CONTAINING PROTEIN 9 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Bromodomain UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  DUF3512 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Brd9 PhenoGen
PRINTS BROMODOMAIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE BROMODOMAIN_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART BROMO UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF47370 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0R4J175 ENTREZGENE, UniProtKB/TrEMBL
  A0A1Y7VJ63_MOUSE UniProtKB/TrEMBL
  A0A1Y7VN62_MOUSE UniProtKB/TrEMBL
  A0A1Y7VNT5_MOUSE UniProtKB/TrEMBL
  BRD9_MOUSE UniProtKB/Swiss-Prot
  Q0P669 ENTREZGENE
  Q3U3P9_MOUSE UniProtKB/TrEMBL
  Q3UQU0 ENTREZGENE
  Q5FWH1 ENTREZGENE
  Q811F7 ENTREZGENE
UniProt Secondary Q0P669 UniProtKB/Swiss-Prot
  Q5FWH1 UniProtKB/Swiss-Prot
  Q811F7 UniProtKB/Swiss-Prot