Imported Disease Annotations - ClinVarTerm | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | genetic disease | | ISO | TRIM7 (Homo sapiens) | 8554872 | ClinVar Annotator: match by term: Inborn genetic diseases | ClinVar | | |
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Imported Disease Annotations - ClinVarTerm | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | genetic disease | | ISO | TRIM7 (Homo sapiens) | 8554872 | ClinVar Annotator: match by term: Inborn genetic diseases | ClinVar | | |
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# | Reference Title | Reference Citation |
1. | MGDs mouse GO annotations | MGD data from the GO Consortium |
2. | Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. | Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73. |
3. | The tripartite motif family identifies cell compartments. | Reymond A, etal., EMBO J 2001 May 1;20(9):2140-51. |
4. | ClinVar Automated Import and Annotation Pipeline | RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations |
5. | Data Import for Chemical-Gene Interactions | RGD automated import pipeline for gene-chemical interactions |
PMID:10349636 | PMID:11042159 | PMID:11076861 | PMID:11217851 | PMID:11916970 | PMID:12477932 | PMID:14610273 | PMID:15618518 | PMID:16141072 | PMID:16141073 | PMID:18287559 | PMID:18799693 |
PMID:21267068 | PMID:21677750 | PMID:21873635 | PMID:29466708 | PMID:30928727 | PMID:32126128 | PMID:32641828 | PMID:34512666 | PMID:35893676 | PMID:36576150 |
Trim7 (Mus musculus - house mouse) |
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TRIM7 (Homo sapiens - human) |
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Trim7 (Rattus norvegicus - Norway rat) |
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Trim7 (Chinchilla lanigera - long-tailed chinchilla) |
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TRIM7 (Pan paniscus - bonobo/pygmy chimpanzee) |
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TRIM7 (Canis lupus familiaris - dog) |
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Trim7 (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
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TRIM7 (Sus scrofa - pig) |
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TRIM7 (Chlorocebus sabaeus - green monkey) |
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Trim7 (Heterocephalus glaber - naked mole-rat) |
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Variants in Trim7
621 total Variants |
The detailed report is available here: | Full Report | CSV | TAB | Printer | ||||
miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/). For more information about miRGate, see PMID:25858286 or access the full paper here. |
The following QTLs overlap with this region. | Full Report | CSV | TAB | Printer | Gviewer |
AI790312 |
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RefSeq Acc Id: | ENSMUST00000046903 ⟹ ENSMUSP00000039011 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | ENSMUST00000109213 ⟹ ENSMUSP00000104836 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | ENSMUST00000129674 ⟹ ENSMUSP00000116067 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | ENSMUST00000131270 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | ENSMUST00000149049 ⟹ ENSMUSP00000114958 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | ENSMUST00000155478 ⟹ ENSMUSP00000118669 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | ENSMUST00000216796 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | NM_001347446 ⟹ NP_001334375 | ||||||||||||
RefSeq Status: | VALIDATED | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | NM_053166 ⟹ NP_444396 | ||||||||||||||||||||||||
RefSeq Status: | VALIDATED | ||||||||||||||||||||||||
Type: | CODING | ||||||||||||||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | XM_006534568 ⟹ XP_006534631 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | XM_006534569 ⟹ XP_006534632 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | XM_006534571 ⟹ XP_006534634 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | XM_006534573 ⟹ XP_006534636 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | XM_006534574 ⟹ XP_006534637 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | XM_006534575 ⟹ XP_006534638 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | XM_006534576 ⟹ XP_006534639 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | XM_006534577 ⟹ XP_006534640 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | XM_011249333 ⟹ XP_011247635 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | XM_017314860 ⟹ XP_017170349 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | NP_444396 ⟸ NM_053166 |
- Peptide Label: | isoform 1 |
- UniProtKB: | Q923T7 (UniProtKB/Swiss-Prot) |
- Sequence: |
RefSeq Acc Id: | XP_006534631 ⟸ XM_006534568 |
- Peptide Label: | isoform X1 |
- UniProtKB: | Q99PQ5 (UniProtKB/Swiss-Prot), Q923T7 (UniProtKB/Swiss-Prot), Q5NCB6 (UniProtKB/Swiss-Prot) |
- Sequence: |
RefSeq Acc Id: | XP_006534632 ⟸ XM_006534569 |
- Peptide Label: | isoform X2 |
- UniProtKB: | Q99PQ5 (UniProtKB/Swiss-Prot), Q923T7 (UniProtKB/Swiss-Prot), Q5NCB6 (UniProtKB/Swiss-Prot) |
- Sequence: |
RefSeq Acc Id: | XP_006534636 ⟸ XM_006534573 |
- Peptide Label: | isoform X4 |
- Sequence: |
RefSeq Acc Id: | XP_006534638 ⟸ XM_006534575 |
- Peptide Label: | isoform X5 |
- UniProtKB: | Q923T7 (UniProtKB/Swiss-Prot) |
- Sequence: |
RefSeq Acc Id: | XP_006534640 ⟸ XM_006534577 |
- Peptide Label: | isoform X4 |
- Sequence: |
RefSeq Acc Id: | XP_006534639 ⟸ XM_006534576 |
- Peptide Label: | isoform X4 |
- Sequence: |
RefSeq Acc Id: | XP_006534634 ⟸ XM_006534571 |
- Peptide Label: | isoform X3 |
- Sequence: |
RefSeq Acc Id: | XP_006534637 ⟸ XM_006534574 |
- Peptide Label: | isoform X4 |
- Sequence: |
RefSeq Acc Id: | XP_011247635 ⟸ XM_011249333 |
- Peptide Label: | isoform X6 |
- UniProtKB: | B2RR25 (UniProtKB/TrEMBL) |
- Sequence: |
RefSeq Acc Id: | XP_017170349 ⟸ XM_017314860 |
- Peptide Label: | isoform X4 |
- Sequence: |
RefSeq Acc Id: | NP_001334375 ⟸ NM_001347446 |
- Peptide Label: | isoform 2 |
- UniProtKB: | Q99PQ5 (UniProtKB/Swiss-Prot), Q923T7 (UniProtKB/Swiss-Prot), Q5NCB6 (UniProtKB/Swiss-Prot), Q5NCB7 (UniProtKB/TrEMBL) |
RefSeq Acc Id: | ENSMUSP00000039011 ⟸ ENSMUST00000046903 |
RefSeq Acc Id: | ENSMUSP00000114958 ⟸ ENSMUST00000149049 |
RefSeq Acc Id: | ENSMUSP00000116067 ⟸ ENSMUST00000129674 |
RefSeq Acc Id: | ENSMUSP00000104836 ⟸ ENSMUST00000109213 |
RefSeq Acc Id: | ENSMUSP00000118669 ⟸ ENSMUST00000155478 |
Name | Modeler | Protein Id | AA Range | Protein Structure |
AF-Q923T7-F1-model_v2 | AlphaFold | Q923T7 | 1-510 | view protein structure |
RGD ID: | 6822385 | ||||||||
Promoter ID: | MM_KWN:7144 | ||||||||
Type: | CpG-Island | ||||||||
SO ACC ID: | SO:0000170 | ||||||||
Source: | MPROMDB | ||||||||
Tissues & Cell Lines: | BoneMarrow_2Hour, BoneMarrow_4Hour, Kidney, Liver, Lung, MEF_B4, MEF_B6, Spleen | ||||||||
Transcripts: | ENSMUST00000093155, ENSMUST00000109215, OTTMUST00000077471, OTTMUST00000077474, OTTMUST00000077475, UC007IPE.1 | ||||||||
Position: |
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RGD ID: | 6822388 | ||||||||
Promoter ID: | MM_KWN:7145 | ||||||||
Type: | Non-CpG | ||||||||
SO ACC ID: | SO:0000170 | ||||||||
Source: | MPROMDB | ||||||||
Tissues & Cell Lines: | Kidney | ||||||||
Transcripts: | OTTMUST00000077472 | ||||||||
Position: |
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RGD ID: | 8674436 | ||||||||
Promoter ID: | EPDNEW_M15248 | ||||||||
Type: | multiple initiation site | ||||||||
Name: | Trim7_2 | ||||||||
Description: | Mus musculus tripartite motif-containing 7 , transcript variant2, mRNA. | ||||||||
SO ACC ID: | SO:0000170 | ||||||||
Source: | EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/) | ||||||||
Alternative Promoters: | null; see alsoEPDNEW_M15249 | ||||||||
Experiment Methods: | Single-end sequencing. | ||||||||
Position: |
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RGD ID: | 8674438 | ||||||||
Promoter ID: | EPDNEW_M15249 | ||||||||
Type: | initiation region | ||||||||
Name: | Trim7_1 | ||||||||
Description: | Mus musculus tripartite motif-containing 7 , transcript variant2, mRNA. | ||||||||
SO ACC ID: | SO:0000170 | ||||||||
Source: | EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/) | ||||||||
Alternative Promoters: | null; see alsoEPDNEW_M15248 | ||||||||
Experiment Methods: | Single-end sequencing. | ||||||||
Position: |
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Database | Acc Id | Source(s) |
AGR Gene | MGI:2137353 | AgrOrtholog |
Ensembl Genes | ENSMUSG00000040350 | Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
Ensembl Transcript | ENSMUST00000046903 | ENTREZGENE |
ENSMUST00000046903.6 | UniProtKB/TrEMBL | |
ENSMUST00000109213 | ENTREZGENE | |
ENSMUST00000109213.9 | UniProtKB/Swiss-Prot | |
ENSMUST00000129674.2 | UniProtKB/TrEMBL | |
ENSMUST00000149049.2 | UniProtKB/TrEMBL | |
ENSMUST00000155478.2 | UniProtKB/TrEMBL | |
Gene3D-CATH | 2.60.120.920 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
3.30.40.10 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
Classic Zinc Finger | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
InterPro | B30.2/SPRY | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
B30.2/SPRY_sf | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
Butyrophylin_SPRY | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
ConA-like_dom_sf | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
PRY | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
SPRY_dom | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
Znf_B-box | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
Znf_B-box_chordata | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
Znf_RING | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
Znf_RING/FYVE/PHD | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
Znf_RING_CS | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
KEGG Report | mmu:94089 | UniProtKB/Swiss-Prot |
MGD | MGI:2137353 | ENTREZGENE |
NCBI Gene | 94089 | ENTREZGENE |
PANTHER | E3 UBIQUITIN-PROTEIN LIGASE TRIM | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
E3 UBIQUITIN-PROTEIN LIGASE TRIM7 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
Pfam | PRY | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
SPRY | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
zf-B_box | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
zf-C3HC4_4 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
PhenoGen | Trim7 | PhenoGen |
PRINTS | BBOXZNFINGER | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
BUTYPHLNCDUF | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
PROSITE | B302_SPRY | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
ZF_BBOX | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
ZF_RING_1 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
ZF_RING_2 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
SMART | BBOX | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
PRY | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
RING | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
SPRY | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
Superfamily-SCOP | B-box zinc-binding domain | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
RING/U-box | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
SSF49899 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
UniProt | B2RR25 | ENTREZGENE, UniProtKB/TrEMBL |
B7ZC92_MOUSE | UniProtKB/TrEMBL | |
Q5NCB6 | ENTREZGENE | |
Q5NCB7 | ENTREZGENE, UniProtKB/TrEMBL | |
Q5NCB9_MOUSE | UniProtKB/TrEMBL | |
Q923T7 | ENTREZGENE | |
Q99PQ5 | ENTREZGENE | |
TRIM7_MOUSE | UniProtKB/Swiss-Prot | |
UniProt Secondary | Q5NCB6 | UniProtKB/Swiss-Prot |
Q99PQ5 | UniProtKB/Swiss-Prot |