Trim7 (tripartite motif-containing 7) - Rat Genome Database

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Gene: Trim7 (tripartite motif-containing 7) Mus musculus
Analyze
Symbol: Trim7
Name: tripartite motif-containing 7
RGD ID: 1316459
MGI Page MGI
Description: Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in antiviral innate immune response and protein ubiquitination. Predicted to act upstream of or within defense response to virus. Located in cytoplasm and nucleus. Orthologous to human TRIM7 (tripartite motif containing 7).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: AI790312; E3 ubiquitin-protein ligase TRIM7; glycogenin-interacting protein; tripartite motif protein 7; tripartite motif-containing protein 7
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391148,716,965 - 48,742,019 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1148,716,967 - 48,743,036 (+)EnsemblGRCm39 Ensembl
GRCm381148,826,138 - 48,851,192 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1148,826,140 - 48,852,209 (+)EnsemblGRCm38mm10GRCm38
MGSCv371148,639,640 - 48,663,697 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361148,673,862 - 48,684,840 (+)NCBIMGSCv36mm8
Celera1153,394,839 - 53,432,557 (+)NCBICelera
Cytogenetic Map11B1.2NCBI
cM Map1128.8NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IBA,IDA,ISO)
Golgi apparatus  (IEA)
nucleus  (IDA,ISO)

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. MGDs mouse GO annotations MGD data from the GO Consortium
2. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
3. The tripartite motif family identifies cell compartments. Reymond A, etal., EMBO J 2001 May 1;20(9):2140-51.
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:11916970   PMID:12477932   PMID:14610273   PMID:15618518   PMID:16141072   PMID:16141073   PMID:18287559   PMID:18799693  
PMID:21267068   PMID:21677750   PMID:21873635   PMID:29466708   PMID:30928727   PMID:32126128   PMID:32641828   PMID:34512666   PMID:35893676   PMID:36576150  


Genomics

Comparative Map Data
Trim7
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391148,716,965 - 48,742,019 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1148,716,967 - 48,743,036 (+)EnsemblGRCm39 Ensembl
GRCm381148,826,138 - 48,851,192 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1148,826,140 - 48,852,209 (+)EnsemblGRCm38mm10GRCm38
MGSCv371148,639,640 - 48,663,697 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361148,673,862 - 48,684,840 (+)NCBIMGSCv36mm8
Celera1153,394,839 - 53,432,557 (+)NCBICelera
Cytogenetic Map11B1.2NCBI
cM Map1128.8NCBI
TRIM7
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385181,193,924 - 181,205,196 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5181,193,924 - 181,205,293 (-)EnsemblGRCh38hg38GRCh38
GRCh375180,620,924 - 180,632,196 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 365180,553,530 - 180,564,783 (-)NCBINCBI36Build 36hg18NCBI36
Build 345180,553,530 - 180,560,536NCBI
Celera5176,248,835 - 176,260,088 (-)NCBICelera
Cytogenetic Map5q35.3NCBI
HuRef5175,348,231 - 175,359,599 (-)NCBIHuRef
CHM1_15180,051,866 - 180,063,235 (-)NCBICHM1_1
T2T-CHM13v2.05181,753,960 - 181,778,284 (-)NCBIT2T-CHM13v2.0
Trim7
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81033,706,614 - 33,722,609 (+)NCBIGRCr8
mRatBN7.21033,205,491 - 33,221,482 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1033,205,491 - 33,221,468 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1037,885,375 - 37,901,367 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0106,423,792 - 6,439,784 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01032,879,013 - 32,895,005 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01034,185,535 - 34,200,750 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1034,185,898 - 34,199,279 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01033,969,297 - 33,983,202 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41034,099,610 - 34,118,055 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11034,106,880 - 34,119,120 (+)NCBI
Celera1032,591,186 - 32,606,413 (+)NCBICelera
Cytogenetic Map10q21NCBI
Trim7
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955530119,018 - 131,979 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955530119,088 - 128,353 (+)NCBIChiLan1.0ChiLan1.0
TRIM7
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24176,217,902 - 176,228,957 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15174,382,590 - 174,393,025 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05176,420,313 - 176,431,371 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15183,671,780 - 183,682,117 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5183,673,023 - 183,682,872 (-)Ensemblpanpan1.1panPan2
TRIM7
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.111393,388 - 402,124 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl11394,710 - 402,005 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha11452,051 - 462,304 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.011355,548 - 365,801 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl11355,555 - 364,165 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.111327,726 - 337,979 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.011415,305 - 425,558 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.011576,706 - 586,971 (-)NCBIUU_Cfam_GSD_1.0
Trim7
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213117,887,875 - 117,896,600 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936826707,395 - 717,329 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936826707,340 - 717,041 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TRIM7
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl257,310,541 - 57,323,153 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1257,310,530 - 57,322,427 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
TRIM7
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12382,758,322 - 82,770,201 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2382,759,558 - 82,769,252 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607514,275,833 - 14,288,603 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Trim7
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624958222,823 - 236,979 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624958221,582 - 234,109 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Trim7
621 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1578
Count of miRNA genes:695
Interacting mature miRNAs:854
Transcripts:ENSMUST00000046903, ENSMUST00000109213, ENSMUST00000129674, ENSMUST00000131270, ENSMUST00000149049, ENSMUST00000155478
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
27226798Scvln18_msacral vertebrae length 2, 16 week (mouse)11325000060690826Mouse
26884446Sklq10_mskull length QTL 10, 10 week (mouse)11325000062890826Mouse
26884453Sklq16_mskull length QTL 16, 16 week (mouse)11325000072690826Mouse
13208559Wght10_mweight 10 (mouse)11395000088890826Mouse
13208558Lgth12_mbody length 12 (mouse)11395000094890826Mouse
1300905Scc6_mcolon tumor susceptibility 6 (mouse)Not determined11688027789019734Mouse
27226738Metcl11_mmetatarsal-calcaneal length 11, 10 week (mouse)11885000061390826Mouse
26884401Huml4_mhumerus length 4, 10 week (mouse)111155000068490826Mouse
27226762Feml21_mfemur length 21, 16 week (mouse)111175000065990826Mouse
1357640Orq2_movulation rate QTL 2 (mouse)Not determined111226863768500330Mouse
4141127W3q4_mweight 3 weeks QTL 4 (mouse)Not determined1226863768500330Mouse
4141470Egq4_mearly growth QTL 4 (mouse)Not determined1226863768500330Mouse
4142109W10q2_mweight 10 weeks QTL 2 (mouse)Not determined1226863768500330Mouse
4141582Lgaq1_mlate growth adjusted QTL 1 (mouse)Not determined1226863768500330Mouse
4142308W6q3_mweight 6 weeks QTL 3 (mouse)Not determined111226863768500330Mouse
4142216Lgq1_mlate growth QTL 1 (mouse)Not determined1226863768500330Mouse
4141966Tailq1_mtail length QTL 1 (mouse)Not determined1226863768500330Mouse
1357851Scfq3_msubcutaneous fat pad weight QTL 3 (mouse)Not determined111226863768500330Mouse
1357720Kidpq1_mkidney weight percentage QTL 1 (mouse)Not determined111226863768500330Mouse
1357437Epfq4_mepididymal fat pad weight QTL 4 (mouse)Not determined111226863768500330Mouse
1559002Lmrq4_mLeishmania major resistance QTL 4 (mouse)Not determined111226863769684947Mouse
39128214Lwq20_mliver weight QTL 20 (mouse)1112268637118022724Mouse
1558945Orgwq8_morgan weight QTL 8 (mouse)Not determined111705617567078411Mouse
10053687Eae6_msusceptibility to experimental allergic encephalomyelitis 6 (mouse)Not determined111778196668500330Mouse
12801459Leuf1_mleukocyte filtration 1 (mouse)111857861652578716Mouse
12801460Intim2_mintima modifier 2 (mouse)111857861652578716Mouse
12801457Intmrm2_mintima/media ratio modifier 2 (mouse)111857861652578716Mouse
1300938Bulb3_mbulb size 3 (mouse)Not determined111857861652578716Mouse
4141894Nidd6k_mNidd6 on KK-A (mouse)Not determined1912420496897826Mouse
1300579Thypr1_mthymocyte proliferative response 1 (mouse)Not determined111928257753282715Mouse
14746971Manh70_mmandible shape 70 (mouse)111990589053905890Mouse
4141398Tgq22_mtriglyceride QTL 22 (mouse)Not determined2116340655163406Mouse
10412246Dfs2_mdental fluorosis suseptibility 2 (mouse)Not determined112180736495881231Mouse
10044006Hbnr13_mHeligmosomoides bakeri nematode resistance 13 (mouse)Not determined112577262659772741Mouse
12910801Pwbwq14_mpost-weaning body weight QTL 14 (mouse)112719805750636094Mouse
12910804Pwbwq16_mpost-weaning body weight QTL 16 (mouse)112719805750636094Mouse
12910806Pwbwq15_mpost-weaning body weight QTL 15 (mouse)112719805750636094Mouse
12910817Pwgrq20_mpost-weaning growth rate QTL 20 (mouse)112719805750636094Mouse
12910818Ogrq5_moverall growth rate QTL 5 (mouse)112719805750636094Mouse
1357844Si5lq5_mserum IGFBP-5 level QTL 5 (mouse)Not determined112816587362165976Mouse
13524848Ppiq7_mprepulse inhibition QTL 7 (mouse)112856914762569147Mouse
1301426Desp2_mdespair 2 (mouse)Not determined112870858162708700Mouse
11522752Cocia18_mcocaine-induced activity, QTL 18 (mouse)113100820965008209Mouse
11059563Lmr31_mleishmaniasis resistance 31 (mouse)113210057766100694Mouse
1357782Char8_mP. chabaudi malaria resistance QTL 8 (mouse)Not determined113557861669684987Mouse
13208569Bmiq10_mbody mass index QTL 10 (mouse)113589082784890826Mouse
1301328Mol4_mmodifier of LPS-response 4 (mouse)Not determined113628257783481356Mouse
1301788Lbw8_mlupus NZB x NZW 8 (mouse)Not determined113650328770509492Mouse
1301896Tria1_mT-cell receptor induced activation 1 (mouse)Not determined113661356570613855Mouse
4141853Skmw17_mskeletal muscle weight 17 (mouse)Not determined113708094171081064Mouse
4142475Ity2a_mimmunity to S. typhimurium 2a (mouse)Not determined113776858060402716Mouse
10766457Nwa3_mNew Zealand White autoimmunity 3 (mouse)113801611572016209Mouse
10053675Eae44b_mexperimental allergic encephalomyelitis susceptibility 44b (mouse)Not determined113995072854094448Mouse
11532698Sluc36a_msusceptibility to lung cancer 36a (mouse)114225661776256730Mouse
11532699Sluc36b_msusceptibility to lung cancer 36b (mouse)114225661776256730Mouse
1300713Vmbic10_mventral midbrain iron content 10 (mouse)Not determined114277262654081064Mouse
4142300Ctrq3_mC. trachomatis resistance QTL 3 (mouse)Not determined114463003876854757Mouse
4141367Inf1_macute ozone induced inflammation (mouse)Not determined44630038113058009Mouse
1302021Nidd1n_mnon-insulin-dependent diabetes mellitus 1 in NSY (mouse)Not determined114516587379978324Mouse
1357878Mastr_mmodifier of astrocytoma (mouse)Not determined114570858189818733Mouse
1300765Bbaa4_mB.burgdorferi-associated arthritis 4 (mouse)Not determined114618516780185262Mouse
1301988Bmd11_mbone mineral density 11 (mouse)Not determined114631940780319522Mouse
13452402Hipmt3_mhippocampal morphometry trait 3 (mouse)114797732550277325Mouse

Markers in Region
AI790312  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381148,841,185 - 48,841,314UniSTSGRCm38
MGSCv371148,654,687 - 48,654,816UniSTSGRCm37
Celera1153,423,547 - 53,423,676UniSTS
Cytogenetic Map11B1.2UniSTS
Whitehead/MRC_RH11648.03UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001347446 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_053166 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006534568 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006534569 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006534571 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006534573 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006534574 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006534575 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006534576 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006534577 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011249333 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017314860 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AF220033 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF396656 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK029860 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL645849 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC138188 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466575 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CU695230 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  LT629149 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  LT629152 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSMUST00000046903   ⟹   ENSMUSP00000039011
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1148,728,292 - 48,741,382 (+)Ensembl
GRCm38.p6 Ensembl1148,837,465 - 48,850,555 (+)Ensembl
RefSeq Acc Id: ENSMUST00000109213   ⟹   ENSMUSP00000104836
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1148,716,967 - 48,742,014 (+)Ensembl
GRCm38.p6 Ensembl1148,826,140 - 48,851,187 (+)Ensembl
RefSeq Acc Id: ENSMUST00000129674   ⟹   ENSMUSP00000116067
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1148,729,631 - 48,736,431 (+)Ensembl
GRCm38.p6 Ensembl1148,838,804 - 48,845,604 (+)Ensembl
RefSeq Acc Id: ENSMUST00000131270
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1148,738,729 - 48,743,036 (+)Ensembl
GRCm38.p6 Ensembl1148,847,902 - 48,852,209 (+)Ensembl
RefSeq Acc Id: ENSMUST00000149049   ⟹   ENSMUSP00000114958
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1148,729,341 - 48,736,374 (+)Ensembl
GRCm38.p6 Ensembl1148,838,514 - 48,845,547 (+)Ensembl
RefSeq Acc Id: ENSMUST00000155478   ⟹   ENSMUSP00000118669
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1148,728,298 - 48,732,260 (+)Ensembl
GRCm38.p6 Ensembl1148,837,471 - 48,841,433 (+)Ensembl
RefSeq Acc Id: ENSMUST00000216796
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1148,728,311 - 48,731,420 (+)Ensembl
GRCm38.p6 Ensembl1148,837,484 - 48,840,593 (+)Ensembl
RefSeq Acc Id: NM_001347446   ⟹   NP_001334375
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391148,728,298 - 48,742,014 (+)NCBI
GRCm381148,837,471 - 48,851,187 (+)NCBI
Sequence:
RefSeq Acc Id: NM_053166   ⟹   NP_444396
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391148,716,965 - 48,741,022 (+)NCBI
GRCm381148,826,138 - 48,850,195 (+)NCBI
MGSCv371148,639,640 - 48,663,697 (+)RGD
Celera1153,394,839 - 53,432,557 (+)RGD
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006534568   ⟹   XP_006534631
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391148,727,614 - 48,742,019 (+)NCBI
GRCm381148,836,787 - 48,851,192 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006534569   ⟹   XP_006534632
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391148,727,614 - 48,742,019 (+)NCBI
GRCm381148,836,787 - 48,851,192 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006534571   ⟹   XP_006534634
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391148,729,521 - 48,742,019 (+)NCBI
GRCm381148,838,694 - 48,851,192 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006534573   ⟹   XP_006534636
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391148,729,195 - 48,742,019 (+)NCBI
GRCm381148,838,365 - 48,851,192 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006534574   ⟹   XP_006534637
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391148,730,609 - 48,742,019 (+)NCBI
GRCm381148,839,773 - 48,851,192 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006534575   ⟹   XP_006534638
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391148,729,196 - 48,742,019 (+)NCBI
GRCm381148,838,365 - 48,851,192 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006534576   ⟹   XP_006534639
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391148,729,433 - 48,742,019 (+)NCBI
GRCm381148,838,606 - 48,851,192 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006534577   ⟹   XP_006534640
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391148,729,247 - 48,742,019 (+)NCBI
GRCm381148,838,416 - 48,851,192 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011249333   ⟹   XP_011247635
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391148,727,614 - 48,731,142 (+)NCBI
GRCm381148,836,787 - 48,840,315 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017314860   ⟹   XP_017170349
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391148,729,434 - 48,742,019 (+)NCBI
GRCm381148,838,607 - 48,851,192 (+)NCBI
Sequence:
RefSeq Acc Id: NP_444396   ⟸   NM_053166
- Peptide Label: isoform 1
- UniProtKB: Q923T7 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006534631   ⟸   XM_006534568
- Peptide Label: isoform X1
- UniProtKB: Q99PQ5 (UniProtKB/Swiss-Prot),   Q923T7 (UniProtKB/Swiss-Prot),   Q5NCB6 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006534632   ⟸   XM_006534569
- Peptide Label: isoform X2
- UniProtKB: Q99PQ5 (UniProtKB/Swiss-Prot),   Q923T7 (UniProtKB/Swiss-Prot),   Q5NCB6 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006534636   ⟸   XM_006534573
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_006534638   ⟸   XM_006534575
- Peptide Label: isoform X5
- UniProtKB: Q923T7 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006534640   ⟸   XM_006534577
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_006534639   ⟸   XM_006534576
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_006534634   ⟸   XM_006534571
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_006534637   ⟸   XM_006534574
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_011247635   ⟸   XM_011249333
- Peptide Label: isoform X6
- UniProtKB: B2RR25 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017170349   ⟸   XM_017314860
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: NP_001334375   ⟸   NM_001347446
- Peptide Label: isoform 2
- UniProtKB: Q99PQ5 (UniProtKB/Swiss-Prot),   Q923T7 (UniProtKB/Swiss-Prot),   Q5NCB6 (UniProtKB/Swiss-Prot),   Q5NCB7 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSMUSP00000039011   ⟸   ENSMUST00000046903
RefSeq Acc Id: ENSMUSP00000114958   ⟸   ENSMUST00000149049
RefSeq Acc Id: ENSMUSP00000116067   ⟸   ENSMUST00000129674
RefSeq Acc Id: ENSMUSP00000104836   ⟸   ENSMUST00000109213
RefSeq Acc Id: ENSMUSP00000118669   ⟸   ENSMUST00000155478
Protein Domains
B box-type   B30.2/SPRY   RING-type

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q923T7-F1-model_v2 AlphaFold Q923T7 1-510 view protein structure

Promoters
RGD ID:6822385
Promoter ID:MM_KWN:7144
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_2Hour,   BoneMarrow_4Hour,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000093155,   ENSMUST00000109215,   OTTMUST00000077471,   OTTMUST00000077474,   OTTMUST00000077475,   UC007IPE.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361148,650,891 - 48,651,792 (+)MPROMDB
RGD ID:6822388
Promoter ID:MM_KWN:7145
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Kidney
Transcripts:OTTMUST00000077472
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361148,660,591 - 48,661,091 (+)MPROMDB
RGD ID:8674436
Promoter ID:EPDNEW_M15248
Type:multiple initiation site
Name:Trim7_2
Description:Mus musculus tripartite motif-containing 7 , transcript variant2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M15249  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381148,826,125 - 48,826,185EPDNEW
RGD ID:8674438
Promoter ID:EPDNEW_M15249
Type:initiation region
Name:Trim7_1
Description:Mus musculus tripartite motif-containing 7 , transcript variant2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M15248  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381148,837,471 - 48,837,531EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2137353 AgrOrtholog
Ensembl Genes ENSMUSG00000040350 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000046903 ENTREZGENE
  ENSMUST00000046903.6 UniProtKB/TrEMBL
  ENSMUST00000109213 ENTREZGENE
  ENSMUST00000109213.9 UniProtKB/Swiss-Prot
  ENSMUST00000129674.2 UniProtKB/TrEMBL
  ENSMUST00000149049.2 UniProtKB/TrEMBL
  ENSMUST00000155478.2 UniProtKB/TrEMBL
Gene3D-CATH 2.60.120.920 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.30.40.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Classic Zinc Finger UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro B30.2/SPRY UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  B30.2/SPRY_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Butyrophylin_SPRY UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ConA-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PRY UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SPRY_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_B-box UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_B-box_chordata UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_RING UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_RING/FYVE/PHD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_RING_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:94089 UniProtKB/Swiss-Prot
MGD MGI:2137353 ENTREZGENE
NCBI Gene 94089 ENTREZGENE
PANTHER E3 UBIQUITIN-PROTEIN LIGASE TRIM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  E3 UBIQUITIN-PROTEIN LIGASE TRIM7 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam PRY UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SPRY UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  zf-B_box UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  zf-C3HC4_4 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Trim7 PhenoGen
PRINTS BBOXZNFINGER UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  BUTYPHLNCDUF UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE B302_SPRY UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZF_BBOX UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZF_RING_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZF_RING_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART BBOX UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PRY UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RING UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SPRY UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP B-box zinc-binding domain UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RING/U-box UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF49899 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt B2RR25 ENTREZGENE, UniProtKB/TrEMBL
  B7ZC92_MOUSE UniProtKB/TrEMBL
  Q5NCB6 ENTREZGENE
  Q5NCB7 ENTREZGENE, UniProtKB/TrEMBL
  Q5NCB9_MOUSE UniProtKB/TrEMBL
  Q923T7 ENTREZGENE
  Q99PQ5 ENTREZGENE
  TRIM7_MOUSE UniProtKB/Swiss-Prot
UniProt Secondary Q5NCB6 UniProtKB/Swiss-Prot
  Q99PQ5 UniProtKB/Swiss-Prot