Ndrg1 (N-myc downstream regulated gene 1) - Rat Genome Database

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Gene: Ndrg1 (N-myc downstream regulated gene 1) Mus musculus
Analyze
Symbol: Ndrg1
Name: N-myc downstream regulated gene 1
RGD ID: 1316420
MGI Page MGI
Description: Predicted to enable cadherin binding activity; small GTPase binding activity; and tubulin binding activity. Involved in negative regulation of cell population proliferation and peripheral nervous system myelin maintenance. Acts upstream of or within mast cell activation. Located in cytoplasm. Is expressed in several structures, including alimentary system; early conceptus; genitourinary system; nervous system; and sensory organ. Used to study Charcot-Marie-Tooth disease type 4D. Human ortholog(s) of this gene implicated in Charcot-Marie-Tooth disease type 4D. Orthologous to human NDRG1 (N-myc downstream regulated 1).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: CAP; CAP43; CMT4D; DRG; DRG1; HMSNL; N; N-myc downstream regulated 1; N-myc downstream regulated-like; N-myc downstream-regulated gene 1 protein; Nd; Ndr1; Ndrl; NMSL; PRO; PROXY1; RTP; TDD5
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391566,801,167 - 66,841,490 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1566,801,167 - 66,841,489 (-)EnsemblGRCm39 Ensembl
GRCm381566,929,318 - 66,969,641 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1566,929,318 - 66,969,640 (-)EnsemblGRCm38mm10GRCm38
MGSCv371566,760,880 - 66,801,203 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361566,758,991 - 66,799,308 (-)NCBIMGSCv36mm8
Celera1568,461,993 - 68,502,305 (-)NCBICelera
Cytogenetic Map15D2NCBI
cM Map1529.3NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-schisandrin B  (ISO)
(-)-epigallocatechin 3-gallate  (ISO)
(1->4)-beta-D-glucan  (EXP)
1,2-dimethylhydrazine  (EXP)
1-benzylpiperazine  (ISO)
1-naphthyl isothiocyanate  (ISO)
17alpha-ethynylestradiol  (EXP,ISO)
17beta-estradiol  (ISO)
17beta-hydroxy-17-methylestra-4,9,11-trien-3-one  (ISO)
17beta-hydroxy-5alpha-androstan-3-one  (ISO)
2,2',4,4',5,5'-hexachlorobiphenyl  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3,7,8-Tetrachlorodibenzofuran  (EXP)
2,4-dinitrotoluene  (ISO)
2-cyclopentyl-4-(5-phenyl-1H-pyrrolo[2,3-b]pyridin-3-yl)benzoic acid  (EXP)
3,3',4,4'-tetrachlorobiphenyl  (ISO)
3,3',5,5'-tetrabromobisphenol A  (ISO)
3,4-dichloroaniline  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
3-Nitrobenzanthrone  (ISO)
4,4'-diaminodiphenylmethane  (EXP,ISO)
4,4'-sulfonyldiphenol  (EXP,ISO)
4-hydroxyphenyl retinamide  (EXP)
5-aza-2'-deoxycytidine  (ISO)
6-propyl-2-thiouracil  (ISO)
acetamide  (ISO)
acetazolamide  (EXP)
aconitine  (ISO)
acrolein  (ISO)
actinomycin D  (EXP)
aflatoxin B1  (EXP,ISO)
all-trans-retinoic acid  (EXP,ISO)
allyl isothiocyanate  (ISO)
alpha-pinene  (ISO)
amphetamine  (ISO)
antimycin A  (EXP)
Archazolid B  (ISO)
aristolochic acid A  (ISO)
arsenite(3-)  (ISO)
arsenous acid  (ISO)
atrazine  (ISO)
azathioprine  (ISO)
azoxystrobin  (ISO)
bafilomycin A1  (ISO)
beauvericin  (ISO)
benzo[a]pyrene  (EXP,ISO)
benzo[a]pyrene diol epoxide I  (ISO)
benzo[b]fluoranthene  (EXP)
benzoates  (ISO)
benzyl isothiocyanate  (ISO)
bis(2-ethylhexyl) phthalate  (EXP,ISO)
bisphenol A  (EXP,ISO)
Bisphenol B  (ISO)
bleomycin A5  (ISO)
bortezomib  (ISO)
butan-1-ol  (ISO)
cadmium dichloride  (ISO)
cadmium sulfate  (EXP,ISO)
caffeine  (ISO)
cannabidiol  (EXP)
carbon monoxide  (ISO)
carbon nanotube  (EXP)
CGP 52608  (ISO)
chloropicrin  (ISO)
chloroquine  (ISO)
chlorpyrifos  (EXP)
ciguatoxin CTX1B  (EXP)
cisplatin  (EXP,ISO)
clofibrate  (EXP)
cobalt atom  (ISO)
cobalt dichloride  (EXP,ISO)
copper atom  (EXP,ISO)
copper(0)  (EXP,ISO)
copper(II) sulfate  (ISO)
corticosterone  (EXP)
coumarin  (ISO)
Cuprizon  (ISO)
cycloheximide  (ISO)
cyclosporin A  (ISO)
cyproconazole  (EXP)
cytarabine  (ISO)
decabromodiphenyl ether  (ISO)
deguelin  (ISO)
desferrioxamine B  (ISO)
dexamethasone  (EXP,ISO)
Diallyl sulfide  (ISO)
diallyl trisulfide  (ISO)
diarsenic trioxide  (ISO)
dibenz[a,h]anthracene  (EXP)
dibutyl phthalate  (EXP,ISO)
diethyl maleate  (ISO)
diethylstilbestrol  (ISO)
dimethylarsinic acid  (EXP)
dioxygen  (EXP,ISO)
diquat  (EXP)
diuron  (ISO)
dorsomorphin  (ISO)
endosulfan  (ISO)
enniatin  (ISO)
enzyme inhibitor  (ISO)
epoxiconazole  (EXP)
ethanol  (EXP,ISO)
ethylparaben  (ISO)
ferric oxide  (EXP)
finasteride  (ISO)
fluoranthene  (EXP)
flutamide  (ISO)
folic acid  (EXP,ISO)
formaldehyde  (ISO)
FR900359  (ISO)
furan  (ISO)
gentamycin  (ISO)
Heptachlor epoxide  (EXP)
hydrogen cyanide  (EXP)
hydrogen peroxide  (ISO)
indometacin  (ISO)
inulin  (EXP)
irinotecan  (ISO)
iron atom  (ISO)
iron dichloride  (ISO)
iron(0)  (ISO)
isobutanol  (ISO)
isoprenaline  (EXP)
ivermectin  (EXP)
ketoconazole  (ISO)
L-ascorbic acid  (ISO)
lead diacetate  (EXP)
lipopolysaccharide  (ISO)
manganese atom  (ISO)
manganese(0)  (ISO)
menadione  (ISO)
methylarsonic acid  (EXP)
methylseleninic acid  (ISO)
mono(2-ethylhexyl) phthalate  (EXP)
Monobutylphthalate  (EXP)
Muraglitazar  (ISO)
N-methyl-4-phenylpyridinium  (ISO)
N-nitrosodiethylamine  (EXP)
N-nitrosodimethylamine  (ISO)
nickel atom  (EXP,ISO)
nickel dichloride  (EXP,ISO)
nickel subsulfide  (EXP,ISO)
nickel sulfate  (EXP,ISO)
niclosamide  (ISO)
nitric oxide  (ISO)
nitrofen  (ISO)
octadecanoic acid  (ISO)
ozone  (ISO)
paracetamol  (EXP,ISO)
paraquat  (EXP)
perfluorooctane-1-sulfonic acid  (EXP)
perfluorooctanoic acid  (ISO)
phenethyl isothiocyanate  (ISO)
phenobarbital  (EXP,ISO)
phenylmercury acetate  (ISO)
picoxystrobin  (ISO)
pioglitazone  (ISO)
pirinixic acid  (EXP)
potassium chromate  (ISO)
potassium cyanide  (EXP)
potassium dichromate  (ISO)
pregnenolone 16alpha-carbonitrile  (EXP)
progesterone  (ISO)
propiconazole  (EXP)
quercetin  (ISO)
quinolin-8-ol  (ISO)
resorcinol  (ISO)
resveratrol  (ISO)
rotenone  (EXP,ISO)
S-(1,2-dichlorovinyl)-L-cysteine  (ISO)
S-adenosyl-L-methioninate  (EXP)
S-adenosyl-L-methionine  (EXP)
SB 431542  (ISO)
serpentine asbestos  (ISO)
silicon dioxide  (EXP,ISO)
simvastatin  (ISO)
sodium arsenate  (EXP)
sodium arsenite  (EXP,ISO)
sotorasib  (ISO)
succimer  (EXP)
sulforaphane  (ISO)
sulindac  (ISO)
sunitinib  (ISO)
tacrolimus hydrate  (EXP)
tamoxifen  (EXP)
temozolomide  (ISO)
tert-butyl hydroperoxide  (ISO)
Tesaglitazar  (ISO)
testosterone  (EXP)
tetrachloromethane  (EXP,ISO)
tetrathiomolybdate(2-)  (ISO)
thapsigargin  (ISO)
thimerosal  (ISO)
thioacetamide  (ISO)
Tiron  (ISO)
trametinib  (ISO)
triadimefon  (EXP)
tributylstannane  (ISO)
triphenyl phosphate  (ISO)
troglitazone  (EXP,ISO)
trovafloxacin  (EXP)
tunicamycin  (ISO)
urethane  (ISO)
valproic acid  (ISO)
vanadium atom  (ISO)
vanadium(0)  (ISO)
vandetanib  (ISO)
vinclozolin  (ISO)
vorinostat  (ISO)
wortmannin  (EXP)
zearalenone  (ISO)
zinc atom  (ISO)
zinc dichloride  (ISO)
zinc(0)  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Mouse brain organization revealed through direct genome-scale TF expression analysis. Gray PA, etal., Science 2004 Dec 24;306(5705):2255-7.
2. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
3. MGDs mouse GO annotations MGD data from the GO Consortium
4. MGD IEA MGD IEA
5. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
6. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
7. PID Annotation Import Pipeline Pipeline to import Pathway Interaction Database annotations from NCI into RGD
8. Mouse MP Annotation Import Pipeline RGD automated import pipeline
9. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
10. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:9144177   PMID:10349636   PMID:10381566   PMID:10581191   PMID:10922068   PMID:11042159   PMID:11076861   PMID:12477932   PMID:12804568   PMID:12904583   PMID:14729612   PMID:15082788  
PMID:15226823   PMID:15293230   PMID:15474366   PMID:15489334   PMID:15782199   PMID:15922294   PMID:16141072   PMID:16141073   PMID:16602821   PMID:17170753   PMID:17302988   PMID:17513753  
PMID:17634366   PMID:17943079   PMID:17998568   PMID:18029550   PMID:18055048   PMID:18194653   PMID:18287559   PMID:19423573   PMID:20551432   PMID:21267068   PMID:21303696   PMID:21677750  
PMID:21731673   PMID:21873635   PMID:22008794   PMID:22516201   PMID:22569553   PMID:22988430   PMID:23212942   PMID:23275438   PMID:23555679   PMID:24165879   PMID:24194600   PMID:24424031  
PMID:24687281   PMID:24715951   PMID:24788519   PMID:24928906   PMID:25664690   PMID:25912685   PMID:26305214   PMID:26416771   PMID:26443704   PMID:26507712   PMID:26633882   PMID:26778110  
PMID:26809587   PMID:26986194   PMID:27382987   PMID:27618784   PMID:27827416   PMID:27889896   PMID:27932476   PMID:28137909   PMID:28219902   PMID:28775290   PMID:29720668   PMID:30018336  
PMID:30121012   PMID:30135513   PMID:30401801   PMID:30482269   PMID:30635555   PMID:30786278   PMID:31043434   PMID:31339191   PMID:32144393   PMID:32325033   PMID:32726607   PMID:32750316  
PMID:33100228   PMID:34321999   PMID:34370295   PMID:34687571   PMID:34935137   PMID:35065073   PMID:35120575   PMID:35708320   PMID:36293380   PMID:36357486   PMID:36417873   PMID:36446521  
PMID:38187761  


Genomics

Comparative Map Data
Ndrg1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391566,801,167 - 66,841,490 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1566,801,167 - 66,841,489 (-)EnsemblGRCm39 Ensembl
GRCm381566,929,318 - 66,969,641 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1566,929,318 - 66,969,640 (-)EnsemblGRCm38mm10GRCm38
MGSCv371566,760,880 - 66,801,203 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361566,758,991 - 66,799,308 (-)NCBIMGSCv36mm8
Celera1568,461,993 - 68,502,305 (-)NCBICelera
Cytogenetic Map15D2NCBI
cM Map1529.3NCBI
NDRG1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh388133,237,175 - 133,297,252 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl8133,237,175 - 133,302,022 (-)EnsemblGRCh38hg38GRCh38
GRCh378134,249,418 - 134,309,495 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 368134,318,596 - 134,378,680 (-)NCBINCBI36Build 36hg18NCBI36
Build 348134,318,595 - 134,378,680NCBI
Celera8130,427,338 - 130,487,468 (-)NCBICelera
Cytogenetic Map8q24.22NCBI
HuRef8129,569,158 - 129,629,277 (-)NCBIHuRef
CHM1_18134,290,434 - 134,350,564 (-)NCBICHM1_1
T2T-CHM13v2.08134,361,278 - 134,421,339 (-)NCBIT2T-CHM13v2.0
Ndrg1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87100,573,526 - 100,614,902 (-)NCBIGRCr8
mRatBN7.2798,684,487 - 98,725,869 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl798,684,487 - 98,725,880 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx7100,449,304 - 100,490,614 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07102,650,974 - 102,692,281 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07102,570,302 - 102,611,611 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.07107,734,326 - 107,775,701 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7107,734,323 - 107,775,714 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.07107,683,921 - 107,725,300 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47104,302,038 - 104,344,842 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.17104,336,268 - 104,379,072 (-)NCBI
Celera795,235,424 - 95,272,338 (-)NCBICelera
Cytogenetic Map7q33NCBI
Ndrg1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554617,786,850 - 7,836,922 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554617,787,068 - 7,836,380 (-)NCBIChiLan1.0ChiLan1.0
NDRG1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v27150,626,425 - 150,686,809 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan18126,140,834 - 126,201,206 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v08129,891,918 - 129,952,489 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.18132,866,245 - 132,926,514 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl8132,866,245 - 132,926,514 (-)Ensemblpanpan1.1panPan2
NDRG1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11329,689,294 - 29,745,964 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1329,650,444 - 29,746,382 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1329,668,427 - 29,710,107 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01330,048,859 - 30,105,421 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1330,050,503 - 30,092,259 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11329,777,136 - 29,818,739 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01329,876,514 - 29,918,203 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01330,226,181 - 30,267,635 (-)NCBIUU_Cfam_GSD_1.0
Ndrg1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244053038,625,163 - 8,676,464 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647016,051,015 - 16,102,585 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647016,051,291 - 16,102,563 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NDRG1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl48,014,446 - 8,069,335 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.148,014,445 - 8,069,335 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.247,894,536 - 7,930,072 (+)NCBISscrofa10.2Sscrofa10.2susScr3
NDRG1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.18127,668,012 - 127,727,918 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl8127,667,981 - 127,719,011 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603912,373,846 - 12,433,462 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ndrg1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473522,734,228 - 22,782,347 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473522,734,365 - 22,782,247 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Ndrg1
1338 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:3009
Count of miRNA genes:752
Interacting mature miRNAs:974
Transcripts:ENSMUST00000005256, ENSMUST00000163496, ENSMUST00000164070, ENSMUST00000164675, ENSMUST00000165966, ENSMUST00000166420, ENSMUST00000167817, ENSMUST00000168542, ENSMUST00000168979, ENSMUST00000170903, ENSMUST00000171266, ENSMUST00000171569, ENSMUST00000172447
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
10401902Sicd2_mseizure-induced cell death 2 (mouse)Not determined15347438971197538Mouse
4141952W3q7_mweight 3 weeks QTL 7 (mouse)Not determined348969478601286Mouse
4142252Tailaq4_mtail length adjusted QTL 4 (mouse)Not determined348969478601286Mouse
4142448Tailq6_mtail length QTL 6 (mouse)Not determined348969478601286Mouse
1357559Scfq2_msubcutaneous fat pad weight QTL 2 (mouse)Not determined15348969478601286Mouse
1357659Epfpq4_mepididymal fat percentage QTL 4 (mouse)Not determined15348969478601286Mouse
26884387Skwq8_mskull length QTL 8, 10 week (mouse)15612948168271849Mouse
26884412Bzwq10_mbi-zygomatic width QTL 10, 10 week (mouse)15612948171471849Mouse
26884417Bzwq4_mbi-zygomatic width QTL 4, 5 week (mouse)15612948172471849Mouse
27226786Feml11_mfemur length 11, 5 week (mouse)15612948175871849Mouse
27095932Ulnl11_mulna length 11, 16 week (mouse)15612948176384200Mouse
27226717Tibw4_mtibia width 4, proximal, 10 week (mouse)15612948178684200Mouse
27226734Tibmd5_mtibia midshaft diameter 5, 10 week (mouse)15612948186684201Mouse
26884442Sklq6_mskull length QTL 6, 5 week (mouse)156129481100797881Mouse
27226721Tibw8_mtibia width 8, proximal, 16 week (mouse)15692948175871849Mouse
27226773Tibl16_mtibia length 16, 10 week (mouse)15692948175871849Mouse
27226777Tibl8_mtibia length 8, 5 week (mouse)15692948184584201Mouse
1301433Rapop5_mradiation-induced apoptosis 5 (mouse)Not determined15927302279474762Mouse
1357526Hyplip2_mhyperlipidemia 2 (mouse)Not determined1512402203102896555Mouse
26884425Cvht2_mcranial vault height 2, 5 week (mouse)1528800146102008435Mouse
26884392Humsd8_mhumerus midshaft diameter 8, 16 week (mouse)152930014676084200Mouse
1558985Eae32_mexperimental allergic encephalomyelitis susceptibility 32 (mouse)Not determined1532578416103425899Mouse
1300578Cd8ts3_mCD8 T cell subset 3 (mouse)Not determined153400469468004804Mouse
1301324Cdif_mcolor difference (mouse)Not determined153597590669976019Mouse
27226729Tibmd2_mtibia midshaft diameter 2, 5 week (mouse)153800024486684201Mouse
1301580Hrq2_mheart rate quantitative locus 2 (mouse)Not determined153910039573100593Mouse
4142459Lfnq3_mlung function QTL 3 (mouse)Not determined4017702272372580Mouse
26884402Cvht9_mcranial vault height 9, 16 week (mouse)154216339695497881Mouse
1357703Vtbt17_mvertebral trabecular bone trait 17 (mouse)Not determined154455331378553437Mouse
1301568Tria2_mT-cell receptor induced activation 2 (mouse)Not determined154485914178859281Mouse
26884420Cvht6_mcranial vault height 6, 10 week (mouse)154556339669171849Mouse
1357756Alaa4_malopecia areata 4 (mouse)Not determined154638964680389845Mouse
10755515Amzn3_manatomical modifier of Zfp423 3 (mouse)154638964680389845Mouse
1301006Hfib1_mhepatic fibrogenesis 1 (mouse)Not determined154730633481306479Mouse
1301860Gct3_mgranulosa cell tumorigenesis 3 (mouse)Not determined154740959681409691Mouse
26884397Humsd5_mhumerus midshaft diameter 5, 10 week (mouse)154836339698397881Mouse
26884399Humsd1_mhumerus midshaft diameter 1, 5 week (mouse)1548363396101708435Mouse
1301429Pcir3_mperiosteal circumference 3 (mouse)Not determined154846536282465496Mouse
1301779Dpml_mdopamine loss (mouse)Not determined155100469476794493Mouse
4142198Hbtq_mhabituation QTL (mouse)Not determined155116070885160833Mouse
10045637Heal27_mwound healing/regeneration 29 (mouse)Not determined155141836185418511Mouse
10412067Pain2_mpain 2 (mouse)Not determined155164533985645626Mouse
1302080Szs13_mseizure susceptibility 13 (mouse)Not determined155168583285694449Mouse
1301708Cocrb14_mcocaine related behavior 14 (mouse)Not determined155180651585806651Mouse
38501067Tip3_mtuberculosis immunophenotype 3, IFN-g level (mouse)155356339689584203Mouse
13504731Cath5_mcarotid atherosclerosis 5 (mouse)155478912988789129Mouse
1302074Bmd4_mbone mineral density 4 (mouse)Not determined1556186708103425899Mouse
27095936Ulnl4_mulna length 4, 5 week (mouse)155676339687684201Mouse
1300800Ses3_msalmonella enteritidis susceptibility 3 (mouse)Not determined155711700591117153Mouse
1357407Pfat4_mpredicted fat percentage 4 (mouse)8.6Body fat amountpredicted fat percentage155711700591117153Mouse
12880420V25Dq8_mvitamin D inactive form serum level QTL 8 (mouse)156158420095584200Mouse
1301601Faq9_mfluctuating asymmetry QTL 9 (mouse)Not determined156316390397163995Mouse
1558786Msq1_mMAV-1 susceptibility QTL 1 (mouse)Not determined156338964681086436Mouse
1302197Bhr2_mbronchial hyperresponsiveness 2 (mouse)Not determined1564306334103425899Mouse
4141135Cia35_mcollagen induced arthritis 35 (mouse)Not determined156481182698811946Mouse
1301119Drb7_mdopamine receptor binding 7 (mouse)Not determined156533657899341028Mouse
1301171Brm2_mbrachyury modifier 2 (mouse)Not determined156552537699525499Mouse

Markers in Region
Ndrg1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map15D2UniSTS
cM Map15 UniSTS
U60593  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381566,929,967 - 66,930,095UniSTSGRCm38
MGSCv371566,761,529 - 66,761,657UniSTSGRCm37
Celera1568,462,642 - 68,462,770UniSTS
Cytogenetic Map15D2UniSTS
Whitehead/MRC_RH15572.32UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_008681 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AA795988 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB004248 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC087116 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC107859 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AI118620 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK004548 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK098075 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK161860 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK165007 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK170281 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK170439 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK170636 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK170809 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK188581 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK194260 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK199494 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK200211 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK207072 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AW611038 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC015282 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC071235 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC141246 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC171968 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY232155 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CA320478 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U52073 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U60593 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSMUST00000005256   ⟹   ENSMUSP00000005256
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1566,801,167 - 66,841,489 (-)Ensembl
GRCm38.p6 Ensembl1566,929,318 - 66,969,640 (-)Ensembl
RefSeq Acc Id: ENSMUST00000163496   ⟹   ENSMUSP00000130584
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1566,814,985 - 66,839,789 (-)Ensembl
GRCm38.p6 Ensembl1566,943,136 - 66,967,940 (-)Ensembl
RefSeq Acc Id: ENSMUST00000164070   ⟹   ENSMUSP00000126091
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1566,818,386 - 66,841,489 (-)Ensembl
GRCm38.p6 Ensembl1566,946,537 - 66,969,640 (-)Ensembl
RefSeq Acc Id: ENSMUST00000164675   ⟹   ENSMUSP00000130150
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1566,813,861 - 66,841,488 (-)Ensembl
GRCm38.p6 Ensembl1566,942,012 - 66,969,639 (-)Ensembl
RefSeq Acc Id: ENSMUST00000165966
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1566,802,715 - 66,806,318 (-)Ensembl
GRCm38.p6 Ensembl1566,930,866 - 66,934,469 (-)Ensembl
RefSeq Acc Id: ENSMUST00000166420   ⟹   ENSMUSP00000127099
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1566,802,926 - 66,841,488 (-)Ensembl
GRCm38.p6 Ensembl1566,931,077 - 66,969,639 (-)Ensembl
RefSeq Acc Id: ENSMUST00000167817   ⟹   ENSMUSP00000127075
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1566,814,928 - 66,820,328 (-)Ensembl
GRCm38.p6 Ensembl1566,943,079 - 66,948,479 (-)Ensembl
RefSeq Acc Id: ENSMUST00000168542   ⟹   ENSMUSP00000127940
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1566,814,923 - 66,841,488 (-)Ensembl
GRCm38.p6 Ensembl1566,943,074 - 66,969,639 (-)Ensembl
RefSeq Acc Id: ENSMUST00000168979   ⟹   ENSMUSP00000126985
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1566,814,928 - 66,839,774 (-)Ensembl
GRCm38.p6 Ensembl1566,943,079 - 66,967,925 (-)Ensembl
RefSeq Acc Id: ENSMUST00000170903   ⟹   ENSMUSP00000127302
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1566,814,978 - 66,841,465 (-)Ensembl
GRCm38.p6 Ensembl1566,943,129 - 66,969,616 (-)Ensembl
RefSeq Acc Id: ENSMUST00000171266   ⟹   ENSMUSP00000129093
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1566,814,946 - 66,841,444 (-)Ensembl
GRCm38.p6 Ensembl1566,943,097 - 66,969,595 (-)Ensembl
RefSeq Acc Id: ENSMUST00000171569
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1566,806,007 - 66,841,488 (-)Ensembl
GRCm38.p6 Ensembl1566,934,158 - 66,969,639 (-)Ensembl
RefSeq Acc Id: ENSMUST00000172447   ⟹   ENSMUSP00000130281
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1566,814,941 - 66,841,465 (-)Ensembl
GRCm38.p6 Ensembl1566,943,092 - 66,969,616 (-)Ensembl
RefSeq Acc Id: NM_008681   ⟹   NP_032707
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391566,801,167 - 66,841,490 (-)NCBI
GRCm381566,929,318 - 66,969,641 (-)ENTREZGENE
MGSCv371566,760,880 - 66,801,203 (-)RGD
Celera1568,461,993 - 68,502,305 (-)RGD
cM Map15 ENTREZGENE
Sequence:
RefSeq Acc Id: NP_032707   ⟸   NM_008681
- UniProtKB: P97862 (UniProtKB/Swiss-Prot),   Q62433 (UniProtKB/Swiss-Prot),   Q545R3 (UniProtKB/TrEMBL),   B7ZWC0 (UniProtKB/TrEMBL),   Q3TD08 (UniProtKB/TrEMBL),   Q3TSR4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000130150   ⟸   ENSMUST00000164675
RefSeq Acc Id: ENSMUSP00000126091   ⟸   ENSMUST00000164070
RefSeq Acc Id: ENSMUSP00000130584   ⟸   ENSMUST00000163496
RefSeq Acc Id: ENSMUSP00000130281   ⟸   ENSMUST00000172447
RefSeq Acc Id: ENSMUSP00000127099   ⟸   ENSMUST00000166420
RefSeq Acc Id: ENSMUSP00000129093   ⟸   ENSMUST00000171266
RefSeq Acc Id: ENSMUSP00000127302   ⟸   ENSMUST00000170903
RefSeq Acc Id: ENSMUSP00000126985   ⟸   ENSMUST00000168979
RefSeq Acc Id: ENSMUSP00000127940   ⟸   ENSMUST00000168542
RefSeq Acc Id: ENSMUSP00000127075   ⟸   ENSMUST00000167817
RefSeq Acc Id: ENSMUSP00000005256   ⟸   ENSMUST00000005256

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q62433-F1-model_v2 AlphaFold Q62433 1-394 view protein structure

Promoters
RGD ID:6826263
Promoter ID:MM_KWN:18657
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   ES_Cell,   Kidney,   Lung,   MEF_B6
Transcripts:NM_008681,   UC007WAY.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361566,800,904 - 66,801,404 (-)MPROMDB
RGD ID:8683888
Promoter ID:EPDNEW_M19975
Type:multiple initiation site
Name:Ndrg1_1
Description:Mus musculus N-myc downstream regulated gene 1 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381566,969,639 - 66,969,699EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1341799 AgrOrtholog
Ensembl Genes ENSMUSG00000005125 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000005256 ENTREZGENE
  ENSMUST00000005256.14 UniProtKB/Swiss-Prot
  ENSMUST00000163496.8 UniProtKB/TrEMBL
  ENSMUST00000164070.2 UniProtKB/TrEMBL
  ENSMUST00000164675.8 UniProtKB/TrEMBL
  ENSMUST00000166420.8 UniProtKB/TrEMBL
  ENSMUST00000167817.8 UniProtKB/TrEMBL
  ENSMUST00000168542.8 UniProtKB/TrEMBL
  ENSMUST00000168979.8 UniProtKB/TrEMBL
  ENSMUST00000170903.8 UniProtKB/TrEMBL
  ENSMUST00000171266.8 UniProtKB/TrEMBL
  ENSMUST00000172447.8 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.1820 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro AB_hydrolase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  NDRG UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:17988 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:1341799 ENTREZGENE
NCBI Gene 17988 ENTREZGENE
PANTHER PTHR11034 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR11034:SF18 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Ndr UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Ndrg1 PhenoGen
Superfamily-SCOP SSF53474 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt B7ZWC0 ENTREZGENE, UniProtKB/TrEMBL
  E9PVF3_MOUSE UniProtKB/TrEMBL
  E9PZC7_MOUSE UniProtKB/TrEMBL
  E9Q0J8_MOUSE UniProtKB/TrEMBL
  E9Q147_MOUSE UniProtKB/TrEMBL
  E9Q3F9_MOUSE UniProtKB/TrEMBL
  E9Q514_MOUSE UniProtKB/TrEMBL
  E9Q5I8_MOUSE UniProtKB/TrEMBL
  E9Q7G8_MOUSE UniProtKB/TrEMBL
  E9Q7V2_MOUSE UniProtKB/TrEMBL
  F6VLR8_MOUSE UniProtKB/TrEMBL
  NDRG1_MOUSE UniProtKB/Swiss-Prot
  P97862 ENTREZGENE
  Q3TD08 ENTREZGENE, UniProtKB/TrEMBL
  Q3TSR4 ENTREZGENE, UniProtKB/TrEMBL
  Q545R3 ENTREZGENE, UniProtKB/TrEMBL
  Q62433 ENTREZGENE
UniProt Secondary P97862 UniProtKB/Swiss-Prot