Slc10a7 (solute carrier family 10 (sodium/bile acid cotransporter family), member 7) - Rat Genome Database
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Gene: Slc10a7 (solute carrier family 10 (sodium/bile acid cotransporter family), member 7) Mus musculus
Analyze
Symbol: Slc10a7
Name: solute carrier family 10 (sodium/bile acid cotransporter family), member 7
RGD ID: 1316406
MGI Page MGI
Description: Predicted to have bile acid transmembrane transporter activity. Involved in bone development and heparin biosynthetic process. Predicted to localize to Golgi apparatus; endoplasmic reticulum; and intrinsic component of plasma membrane. Is expressed in several structures, including alimentary system; hypertrophic cartilage zone; limb segment; trabecular myocardium; and vertebral cartilage condensation. Orthologous to human SLC10A7 (solute carrier family 10 member 7); INTERACTS WITH 1,2-dimethylhydrazine; 2,3,7,8-tetrachlorodibenzodioxine; aflatoxin B1.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: 2410193C02Rik; Na(+)/bile acid cotransporter 7; P7; sodium/bile acid cotransporter 7; solute carrier family 10 member 7
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39879,235,957 - 79,460,641 (+)NCBIGRCm39mm39
GRCm38878,509,323 - 78,734,012 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl878,509,346 - 78,734,003 (+)EnsemblGRCm38mm10GRCm38
MGSCv37881,033,234 - 81,257,904 (+)NCBIGRCm37mm9NCBIm37
MGSCv36881,405,647 - 81,627,710 (+)NCBImm8
Celera882,785,960 - 83,011,085 (+)NCBICelera
Cytogenetic Map8C1NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:12477932   PMID:12520002   PMID:12904583   PMID:14610273   PMID:14681479   PMID:15489334   PMID:15782199   PMID:16141072   PMID:16141073  
PMID:17628207   PMID:17967808   PMID:18799693   PMID:21267068   PMID:21873635   PMID:26273529   PMID:30082715  


Genomics

Comparative Map Data
Slc10a7
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39879,235,957 - 79,460,641 (+)NCBIGRCm39mm39
GRCm38878,509,323 - 78,734,012 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl878,509,346 - 78,734,003 (+)EnsemblGRCm38mm10GRCm38
MGSCv37881,033,234 - 81,257,904 (+)NCBIGRCm37mm9NCBIm37
MGSCv36881,405,647 - 81,627,710 (+)NCBImm8
Celera882,785,960 - 83,011,085 (+)NCBICelera
Cytogenetic Map8C1NCBI
SLC10A7
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl4146,253,975 - 146,521,964 (-)EnsemblGRCh38hg38GRCh38
GRCh384146,253,981 - 146,522,351 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh374147,175,137 - 147,443,123 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 364147,395,627 - 147,662,535 (-)NCBINCBI36hg18NCBI36
Celera4144,494,604 - 144,763,675 (-)NCBI
Cytogenetic Map4q31.22NCBI
HuRef4142,895,956 - 143,170,355 (-)NCBIHuRef
CHM1_14147,152,427 - 147,420,419 (-)NCBICHM1_1
Slc10a7
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.01932,857,984 - 33,081,359 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1932,855,343 - 33,080,998 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01943,751,269 - 43,972,967 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41931,029,928 - 31,074,346 (+)NCBIRGSC3.4rn4RGSC3.4
Celera1928,685,274 - 28,905,878 (-)NCBICelera
Cytogenetic Map19q11NCBI
Slc10a7
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554281,999,280 - 2,250,234 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554281,999,341 - 2,250,201 (-)NCBIChiLan1.0ChiLan1.0
SLC10A7
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.14150,249,964 - 150,511,066 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl4150,251,966 - 150,510,812 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v04138,592,266 - 138,857,833 (-)NCBIMhudiblu_PPA_v0panPan3
SLC10A7
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl1544,720,629 - 44,957,495 (-)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.11544,718,085 - 44,957,787 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Slc10a7
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_0049365352,792,576 - 3,038,504 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC10A7
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl882,115,056 - 82,355,655 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1882,115,057 - 82,355,660 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2887,489,210 - 87,651,904 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Sscrofa10.2887,282,708 - 87,303,582 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SLC10A7
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1792,798,344 - 93,052,737 (-)NCBI
Slc10a7
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248535,110,729 - 5,365,312 (-)NCBI

Position Markers
D8Mit103  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38878,700,043 - 78,700,145UniSTSGRCm38
MGSCv37881,223,942 - 81,224,044UniSTSGRCm37
Celera882,977,040 - 82,977,138UniSTS
Cytogenetic Map8C3UniSTS
cM Map837.0UniSTS
Whitehead Genetic838.3UniSTS
Whitehead_YAC8 UniSTS
UniSTS:235938  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38878,648,481 - 78,648,712UniSTSGRCm38
MGSCv37881,172,380 - 81,172,611UniSTSGRCm37
Celera882,925,478 - 82,925,709UniSTS
Cytogenetic Map8C3UniSTS
Slc10a7  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map8C3UniSTS
cM Map837.04UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4140967Bmd39_mbone mineral density 39 (mouse)Not determined832016544117238700Mouse
1558875Eae31_mexperimental allergic encephalomyelitis susceptibility 31 (mouse)Not determined834642776114837007Mouse
1301013Capsq4_mcapsaicin sensitivity related QTL 4 (mouse)Not determined83616300092728652Mouse
27226754Femd6_mfemur midshaft diameter 6, 10 week (mouse)837400000109600000Mouse
12904744Carcdq1_mcardiac collagen deposition QTL 1 (mouse)83970925694689598Mouse
1301717Adip4_madiposity 4 (mouse)Not determined84763703081637146Mouse
10766453Char11_mP. chabaudi malaria resistance QTL 11 (mouse)84763703081637146Mouse
1301441Skull11_mskull morphology 11 (mouse)Not determined84773713481737254Mouse
1357715Alaa3_malopecia areata 3 (mouse)Not determined84879293982793021Mouse
14746987Manh64_mmandible shape 64 (mouse)85005330684053306Mouse
14747005Mancz7_mmandible centroid size 7 (mouse)85005330684053306Mouse
14700686Civq3_mcerebral infarct volume QTL 3 (mouse)85188219185882191Mouse
1301506Aevm1_mautoimmune extremity vasculitis in MRL mice 1 (mouse)Not determined85428781788287993Mouse
1301952Im3_mimmunoregulatory 3 (mouse)Not determined85470661488706763Mouse
10412287Carg3_mCandida albicans resistance gene 3 (mouse)Not determined85554502889545028Mouse
11353828Gf7_mgonadal fat pad weight 7 (mouse)85820147992201479Mouse
10043975Obq31_mobesity QTL 31 (mouse)Not determined85840977692409776Mouse
1301688Orch6_mautoimmune orchitis resistance 6 (mouse)Not determined86078685094786976Mouse
4141285Tgq18_mtriglyceride QTL 18 (mouse)Not determined6346010797460107Mouse
4141797Skmw16_mskeletal muscle weight 16 (mouse)Not determined86393954797939696Mouse
1357787Vtbt5_mvertebral trabecular bone trait 5 (mouse)Not determined86535776899357920Mouse
10043992Hbnr11_mHeligmosomoides bakeri nematode resistance 11 (mouse)Not determined86560020799600347Mouse
10766466Char12_mP. chabaudi malaria resistance QTL 12 (mouse)86826982782600347Mouse
1301767Fcsa2_mfemoral cross-sectional area 2 (mouse)Not determined870305375104305495Mouse
4142283Imraq2_mimmune response to AAV2 QTL 2 (mouse)Not determined870305375104305495Mouse
1558780Idd22_minsulin dependent diabetes susceptibility 22 (mouse)Not determined871102903105103009Mouse
4141395Char2a_mP. chabaudi malaria resistance QTL 2a (mouse)Not determined7113678390202598Mouse
4142023W3q5_mweight 3 weeks QTL 5 (mouse)Not determined71287817123895615Mouse
1357708Orq1_movulation rate QTL 1 (mouse)Not determined871287817123895615Mouse
1301872Cd4ts3_mCD4 T cell subset 3 (mouse)Not determined871396181105396393Mouse
1300920Pitm3_mprion incubation time 3 (mouse)Not determined873202495107202598Mouse
27095912Pglq14_mpelvic girdle length QTL 14, 16 week (mouse)873400000126100000Mouse
1558890Lith18_mlithogenic gene 18 (mouse)Not determined875675517109675623Mouse
1357470Obq16_mobesity QTL 16 (mouse)Not determined875685348109685497Mouse
1301808Nhdlq1_mnon-HDL QTL 1 (mouse)Not determined875685348109685497Mouse
1301874Hdlq16_mHDL QTL 16 (mouse)Not determined875685348109685497Mouse
10412234Nhdlq14_mnon-HDL QTL 14 (mouse)Not determined875685348109685497Mouse
1301099Cbm2_mcerebellum weight 2 (mouse)Not determined878518613112518703Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:717
Count of miRNA genes:468
Interacting mature miRNAs:544
Transcripts:ENSMUST00000034111
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001009981 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001282108 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001282109 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_029736 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_104094 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006531488 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006531489 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006531491 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011248545 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017313009 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017313010 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004934897 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004934898 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004934899 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004934900 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_387783 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_387784 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_878921 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC101757 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC139107 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK010834 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK039625 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK040517 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK051650 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK079901 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK152752 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK152849 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK160402 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK165983 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK198131 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY825926 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY825927 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY825928 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC116666 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC116717 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY149953 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466525 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000034111   ⟹   ENSMUSP00000034111
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl878,509,368 - 78,734,003 (+)Ensembl
RefSeq Acc Id: ENSMUST00000209490   ⟹   ENSMUSP00000148199
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl878,509,352 - 78,734,003 (+)Ensembl
RefSeq Acc Id: ENSMUST00000209643
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl878,578,717 - 78,648,091 (+)Ensembl
RefSeq Acc Id: ENSMUST00000209992   ⟹   ENSMUSP00000147659
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl878,509,575 - 78,731,638 (+)Ensembl
RefSeq Acc Id: ENSMUST00000210132
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl878,697,174 - 78,728,576 (+)Ensembl
RefSeq Acc Id: ENSMUST00000210515   ⟹   ENSMUSP00000147826
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl878,509,575 - 78,731,638 (+)Ensembl
RefSeq Acc Id: ENSMUST00000210630   ⟹   ENSMUSP00000147396
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl878,509,392 - 78,734,002 (+)Ensembl
RefSeq Acc Id: ENSMUST00000210703
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl878,577,751 - 78,734,002 (+)Ensembl
RefSeq Acc Id: ENSMUST00000211286   ⟹   ENSMUSP00000147724
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl878,509,450 - 78,733,579 (+)Ensembl
RefSeq Acc Id: ENSMUST00000211315
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl878,588,616 - 78,688,758 (+)Ensembl
RefSeq Acc Id: ENSMUST00000211332
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl878,509,346 - 78,712,757 (+)Ensembl
RefSeq Acc Id: NM_001009981   ⟹   NP_001009981
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39879,235,957 - 79,460,641 (+)NCBI
GRCm38878,509,328 - 78,734,012 (+)NCBI
Celera882,785,953 - 83,011,092 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001282108   ⟹   NP_001269037
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39879,235,957 - 79,460,641 (+)NCBI
GRCm38878,509,328 - 78,734,012 (+)NCBI
Celera882,785,953 - 83,011,092 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001282109   ⟹   NP_001269038
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39879,235,957 - 79,460,641 (+)NCBI
GRCm38878,509,328 - 78,734,012 (+)NCBI
Celera882,785,953 - 83,011,092 (+)NCBI
Sequence:
RefSeq Acc Id: NM_029736   ⟹   NP_084012
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39879,235,957 - 79,460,641 (+)NCBI
GRCm38878,509,328 - 78,734,012 (+)NCBI
MGSCv37881,033,234 - 81,257,904 (+)RGD
Celera882,785,953 - 83,011,092 (+)NCBI
cM Map8 ENTREZGENE
Sequence:
RefSeq Acc Id: NR_104094
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39879,235,957 - 79,460,641 (+)NCBI
GRCm38878,509,328 - 78,734,012 (+)NCBI
Celera882,785,953 - 83,011,092 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006531488   ⟹   XP_006531551
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39879,236,089 - 79,460,634 (+)NCBI
GRCm38878,509,323 - 78,734,005 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006531489   ⟹   XP_006531552
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39879,235,957 - 79,330,885 (+)NCBI
GRCm38878,509,323 - 78,604,256 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006531491   ⟹   XP_006531554
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39879,235,969 - 79,376,294 (+)NCBI
GRCm38878,509,323 - 78,649,663 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011248545   ⟹   XP_011246847
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39879,236,178 - 79,423,808 (+)NCBI
GRCm38878,509,323 - 78,697,179 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017313009   ⟹   XP_017168498
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39879,235,972 - 79,330,699 (+)NCBI
GRCm38878,509,323 - 78,604,073 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017313010   ⟹   XP_017168499
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39879,236,178 - 79,257,786 (+)NCBI
GRCm38878,509,328 - 78,531,157 (+)NCBI
Sequence:
RefSeq Acc Id: XR_004934897
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39879,235,981 - 79,460,634 (+)NCBI
RefSeq Acc Id: XR_004934898
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39879,235,957 - 79,460,634 (+)NCBI
RefSeq Acc Id: XR_004934899
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39879,235,957 - 79,460,634 (+)NCBI
RefSeq Acc Id: XR_004934900
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39879,236,048 - 79,460,634 (+)NCBI
RefSeq Acc Id: XR_387783
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39879,235,957 - 79,460,634 (+)NCBI
GRCm38878,509,323 - 78,734,005 (+)NCBI
Sequence:
RefSeq Acc Id: XR_387784
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39879,235,973 - 79,460,634 (+)NCBI
GRCm38878,509,323 - 78,734,005 (+)NCBI
Sequence:
RefSeq Acc Id: XR_878921
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39879,235,981 - 79,460,634 (+)NCBI
GRCm38878,509,323 - 78,734,005 (+)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: NP_084012   ⟸   NM_029736
- Peptide Label: isoform a
- UniProtKB: Q5PT53 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001269037   ⟸   NM_001282108
- Peptide Label: isoform d
- UniProtKB: Q5PT53 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001009981   ⟸   NM_001009981
- Peptide Label: isoform c
- UniProtKB: Q5PT53 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001269038   ⟸   NM_001282109
- Peptide Label: isoform e
- Sequence:
RefSeq Acc Id: XP_006531551   ⟸   XM_006531488
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006531554   ⟸   XM_006531491
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_006531552   ⟸   XM_006531489
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_011246847   ⟸   XM_011248545
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_017168498   ⟸   XM_017313009
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_017168499   ⟸   XM_017313010
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: ENSMUSP00000034111   ⟸   ENSMUST00000034111
RefSeq Acc Id: ENSMUSP00000147724   ⟸   ENSMUST00000211286
RefSeq Acc Id: ENSMUSP00000147396   ⟸   ENSMUST00000210630
RefSeq Acc Id: ENSMUSP00000147826   ⟸   ENSMUST00000210515
RefSeq Acc Id: ENSMUSP00000147659   ⟸   ENSMUST00000209992
RefSeq Acc Id: ENSMUSP00000148199   ⟸   ENSMUST00000209490

Promoters
RGD ID:8667535
Promoter ID:EPDNEW_M11799
Type:initiation region
Name:Slc10a7_1
Description:Mus musculus solute carrier family 10 (sodium/bile acid cotransporterfamily), member 7 , transcript variant b, non-coding RNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38878,509,352 - 78,509,412EPDNEW
RGD ID:6843615
Promoter ID:MM_KWN:54933
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6
Transcripts:ENSMUST00000093415,   ENSMUST00000093416,   ENSMUST00000109899,   NM_009033,   NM_029736,   UC009MIA.1,   UC009MIB.1,   UC009MIC.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36881,031,961 - 81,033,602 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1924025 AgrOrtholog
Ensembl Genes ENSMUSG00000031684 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000034111 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000147396 UniProtKB/TrEMBL
  ENSMUSP00000147659 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000147724 UniProtKB/Swiss-Prot
  ENSMUSP00000147826 UniProtKB/TrEMBL
  ENSMUSP00000148199 ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000034111 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000209490 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000209992 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000210515 UniProtKB/TrEMBL
  ENSMUST00000210630 UniProtKB/TrEMBL
  ENSMUST00000211286 UniProtKB/Swiss-Prot
Gene3D-CATH 1.20.1530.20 UniProtKB/Swiss-Prot
InterPro Na+/solute_symporter_sf UniProtKB/Swiss-Prot
  Put_Na-Bile_cotransptr UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:76775 UniProtKB/Swiss-Prot
MGD MGI:1924025 ENTREZGENE
NCBI Gene 76775 ENTREZGENE
PANTHER PTHR18640 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam SBF_like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Slc10a7 PhenoGen
PIRSF UCP026166 UniProtKB/Swiss-Prot
UniGene Mm.334631 ENTREZGENE
UniProt A0A1B0GR66_MOUSE UniProtKB/TrEMBL
  NTCP7_MOUSE UniProtKB/Swiss-Prot
  Q5PT52_MOUSE UniProtKB/TrEMBL
  Q5PT53 ENTREZGENE
UniProt Secondary Q5PT51 UniProtKB/Swiss-Prot
  Q8BV58 UniProtKB/Swiss-Prot
  Q8BYD0 UniProtKB/Swiss-Prot
  Q9CWD6 UniProtKB/Swiss-Prot