Gcat (glycine C-acetyltransferase (2-amino-3-ketobutyrate-coenzyme A ligase)) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: Gcat (glycine C-acetyltransferase (2-amino-3-ketobutyrate-coenzyme A ligase)) Mus musculus
Analyze
Symbol: Gcat
Name: glycine C-acetyltransferase (2-amino-3-ketobutyrate-coenzyme A ligase)
RGD ID: 1316397
MGI Page MGI
Description: Predicted to enable glycine C-acetyltransferase activity and pyridoxal phosphate binding activity. Predicted to be involved in biosynthetic process and threonine catabolic process. Located in mitochondrial inner membrane. Is expressed in several structures, including alimentary system; brain; genitourinary system; integumental system; and sensory organ. Orthologous to human GCAT (glycine C-acetyltransferase).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 2-amino-3-ketobutyrate coenzyme A ligase, mitochondrial; AI526977; AKB ligase; aminoacetone synthase; glycine acetyltransferase; Kb; Kbl
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391578,915,074 - 78,926,731 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1578,915,074 - 78,922,553 (+)EnsemblGRCm39 Ensembl
GRCm39 Ensembl1578,915,101 - 78,926,731 (+)EnsemblGRCm39 Ensembl
GRCm381579,030,874 - 79,042,531 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1579,030,874 - 79,038,353 (+)EnsemblGRCm38mm10GRCm38
GRCm38.p6 Ensembl1579,030,901 - 79,042,531 (+)EnsemblGRCm38mm10GRCm38
MGSCv371578,861,304 - 78,872,961 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361578,858,175 - 78,865,609 (+)NCBIMGSCv36mm8
Celera1581,132,500 - 81,144,160 (+)NCBICelera
Cytogenetic Map15E1NCBI
cM Map1537.7NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-schisandrin B  (ISO)
1,1-dichloroethene  (EXP)
1,2-dichloroethane  (EXP)
1,2-dimethylhydrazine  (EXP)
1-naphthyl isothiocyanate  (ISO)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-diaminotoluene  (EXP)
2,4-dinitrotoluene  (ISO)
3-methylcholanthrene  (EXP)
4,4'-diaminodiphenylmethane  (ISO)
6-propyl-2-thiouracil  (ISO)
acetamide  (ISO)
acrylamide  (ISO)
aflatoxin B1  (EXP,ISO)
all-trans-retinoic acid  (ISO)
aristolochic acid A  (ISO)
avobenzone  (ISO)
belinostat  (ISO)
benzo[a]pyrene  (EXP,ISO)
bisphenol A  (EXP,ISO)
carbon nanotube  (EXP)
cisplatin  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
copper(II) sulfate  (ISO)
cyclosporin A  (ISO)
diazinon  (ISO)
dibutyl phthalate  (EXP)
doxorubicin  (EXP,ISO)
elemental selenium  (ISO)
entinostat  (ISO)
fenofibrate  (ISO)
folic acid  (EXP)
fumonisin B1  (EXP)
indole-3-methanol  (ISO)
indometacin  (ISO)
N-nitrosodimethylamine  (ISO)
nefazodone  (ISO)
nickel dichloride  (ISO)
nimesulide  (ISO)
ozone  (ISO)
paracetamol  (EXP,ISO)
perfluorooctane-1-sulfonic acid  (EXP)
pirinixic acid  (EXP)
resveratrol  (EXP,ISO)
selenium atom  (ISO)
silicon dioxide  (ISO)
silver atom  (EXP)
silver(0)  (EXP)
sodium dichromate  (ISO)
sodium fluoride  (EXP)
testosterone  (EXP)
testosterone enanthate  (ISO)
tetrachloroethene  (EXP)
tetrachloromethane  (EXP,ISO)
thapsigargin  (ISO)
thioacetamide  (ISO)
trichostatin A  (ISO)
trimellitic anhydride  (EXP)
triptonide  (EXP)
trovafloxacin  (EXP)
tunicamycin  (ISO)
valproic acid  (ISO)
vancomycin  (EXP)
vinclozolin  (ISO)
vorinostat  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2. MGDs mouse GO annotations MGD data from the GO Consortium
3. Integrated analysis of protein composition, tissue diversity, and gene regulation in mouse mitochondria. Mootha VK, etal., Cell 2003 Nov 26;115(5):629-40.
4. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
5. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
6. SMPDB Annotation Import Pipeline Pipeline to import SMPDB annotations from SMPDB into RGD
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
8. Comparative analyses of the Dominant megacolon-SOX10 genomic interval in mouse and human. Southard-Smith EM, etal., Mamm Genome 1999 Jul;10(7):744-9.
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10712613   PMID:11042159   PMID:11076861   PMID:12477932   PMID:12865426   PMID:14610273   PMID:14681479   PMID:15489334   PMID:15757516   PMID:15782199  
PMID:16141072   PMID:16141073   PMID:17688197   PMID:18614015   PMID:18799693   PMID:21267068   PMID:21677750   PMID:21873635   PMID:28378742   PMID:29323231   PMID:30550785   PMID:36114006  
PMID:36604605  


Genomics

Comparative Map Data
Gcat
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391578,915,074 - 78,926,731 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1578,915,074 - 78,922,553 (+)EnsemblGRCm39 Ensembl
GRCm39 Ensembl1578,915,101 - 78,926,731 (+)EnsemblGRCm39 Ensembl
GRCm381579,030,874 - 79,042,531 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1579,030,874 - 79,038,353 (+)EnsemblGRCm38mm10GRCm38
GRCm38.p6 Ensembl1579,030,901 - 79,042,531 (+)EnsemblGRCm38mm10GRCm38
MGSCv371578,861,304 - 78,872,961 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361578,858,175 - 78,865,609 (+)NCBIMGSCv36mm8
Celera1581,132,500 - 81,144,160 (+)NCBICelera
Cytogenetic Map15E1NCBI
cM Map1537.7NCBI
GCAT
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382237,807,934 - 37,817,183 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2237,807,905 - 37,817,176 (+)EnsemblGRCh38hg38GRCh38
GRCh372238,203,941 - 38,213,190 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362236,533,901 - 36,542,850 (+)NCBINCBI36Build 36hg18NCBI36
Build 342236,528,454 - 36,537,403NCBI
Celera2222,005,704 - 22,014,976 (+)NCBICelera
Cytogenetic Map22q13.1NCBI
HuRef2221,170,909 - 21,180,178 (+)NCBIHuRef
CHM1_12238,162,662 - 38,171,933 (+)NCBICHM1_1
T2T-CHM13v2.02238,269,561 - 38,278,815 (+)NCBIT2T-CHM13v2.0
Gcat
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87112,475,572 - 112,481,920 (+)NCBIGRCr8
mRatBN7.27110,595,126 - 110,601,474 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7110,595,091 - 110,601,473 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx7112,344,758 - 112,350,975 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07114,568,289 - 114,574,506 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07114,536,921 - 114,543,140 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.07120,263,068 - 120,269,365 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7120,263,054 - 120,269,451 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.07120,254,453 - 120,290,686 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47117,003,626 - 117,010,396 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.17117,037,855 - 117,044,625 (+)NCBI
Celera7106,929,404 - 106,935,689 (+)NCBICelera
Cytogenetic Map7q34NCBI
Gcat
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541324,184,997 - 24,192,229 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541324,184,997 - 24,192,178 (+)NCBIChiLan1.0ChiLan1.0
GCAT
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22347,666,252 - 47,675,318 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12250,354,605 - 50,363,681 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02218,722,886 - 18,731,963 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12236,554,050 - 36,563,429 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2236,554,067 - 36,563,429 (+)Ensemblpanpan1.1panPan2
GCAT
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11026,821,121 - 26,827,496 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1026,821,027 - 26,827,707 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1026,775,846 - 26,782,054 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01027,612,460 - 27,618,671 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1027,605,669 - 27,619,049 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11027,335,676 - 27,341,859 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01027,644,101 - 27,650,310 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01027,821,320 - 27,827,528 (-)NCBIUU_Cfam_GSD_1.0
Gcat
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494510,296,601 - 10,303,032 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364923,304,031 - 3,313,475 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364923,307,015 - 3,313,441 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GCAT
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl510,027,044 - 10,038,433 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1510,027,133 - 10,038,494 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.257,426,530 - 7,437,953 (-)NCBISscrofa10.2Sscrofa10.2susScr3
GCAT
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11920,508,082 - 20,516,911 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1920,508,506 - 20,516,732 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666045105,275,789 - 105,285,784 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Gcat
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475210,089,827 - 10,103,515 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475210,095,979 - 10,103,442 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Gcat
377 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:828
Count of miRNA genes:489
Interacting mature miRNAs:584
Transcripts:ENSMUST00000006544, ENSMUST00000058004, ENSMUST00000171999
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
27226734Tibmd5_mtibia midshaft diameter 5, 10 week (mouse)15612948186684201Mouse
26884442Sklq6_mskull length QTL 6, 5 week (mouse)156129481100797881Mouse
27226777Tibl8_mtibia length 8, 5 week (mouse)15692948184584201Mouse
1301433Rapop5_mradiation-induced apoptosis 5 (mouse)Not determined15927302279474762Mouse
1357526Hyplip2_mhyperlipidemia 2 (mouse)Not determined1512402203102896555Mouse
26884425Cvht2_mcranial vault height 2, 5 week (mouse)1528800146102008435Mouse
1558985Eae32_mexperimental allergic encephalomyelitis susceptibility 32 (mouse)Not determined1532578416103425899Mouse
27226729Tibmd2_mtibia midshaft diameter 2, 5 week (mouse)153800024486684201Mouse
26884402Cvht9_mcranial vault height 9, 16 week (mouse)154216339695497881Mouse
1357756Alaa4_malopecia areata 4 (mouse)Not determined154638964680389845Mouse
10755515Amzn3_manatomical modifier of Zfp423 3 (mouse)154638964680389845Mouse
1301006Hfib1_mhepatic fibrogenesis 1 (mouse)Not determined154730633481306479Mouse
1301860Gct3_mgranulosa cell tumorigenesis 3 (mouse)Not determined154740959681409691Mouse
26884397Humsd5_mhumerus midshaft diameter 5, 10 week (mouse)154836339698397881Mouse
26884399Humsd1_mhumerus midshaft diameter 1, 5 week (mouse)1548363396101708435Mouse
1301429Pcir3_mperiosteal circumference 3 (mouse)Not determined154846536282465496Mouse
4142198Hbtq_mhabituation QTL (mouse)Not determined155116070885160833Mouse
10045637Heal27_mwound healing/regeneration 29 (mouse)Not determined155141836185418511Mouse
10412067Pain2_mpain 2 (mouse)Not determined155164533985645626Mouse
1302080Szs13_mseizure susceptibility 13 (mouse)Not determined155168583285694449Mouse
1301708Cocrb14_mcocaine related behavior 14 (mouse)Not determined155180651585806651Mouse
38501067Tip3_mtuberculosis immunophenotype 3, IFN-g level (mouse)155356339689584203Mouse
13504731Cath5_mcarotid atherosclerosis 5 (mouse)155478912988789129Mouse
1302074Bmd4_mbone mineral density 4 (mouse)Not determined1556186708103425899Mouse
27095936Ulnl4_mulna length 4, 5 week (mouse)155676339687684201Mouse
1300800Ses3_msalmonella enteritidis susceptibility 3 (mouse)Not determined155711700591117153Mouse
1357407Pfat4_mpredicted fat percentage 4 (mouse)8.6Body fat amountpredicted fat percentage155711700591117153Mouse
12880420V25Dq8_mvitamin D inactive form serum level QTL 8 (mouse)156158420095584200Mouse
1301601Faq9_mfluctuating asymmetry QTL 9 (mouse)Not determined156316390397163995Mouse
1558786Msq1_mMAV-1 susceptibility QTL 1 (mouse)Not determined156338964681086436Mouse
1302197Bhr2_mbronchial hyperresponsiveness 2 (mouse)Not determined1564306334103425899Mouse
4141135Cia35_mcollagen induced arthritis 35 (mouse)Not determined156481182698811946Mouse
1301119Drb7_mdopamine receptor binding 7 (mouse)Not determined156533657899341028Mouse
1301171Brm2_mbrachyury modifier 2 (mouse)Not determined156552537699525499Mouse
4141921Pstc3_mperiosteal circumference 3 (mouse)Not determined1567270698101270847Mouse
1300627Sluc26_msusceptibility to lung cancer 26 (mouse)Not determined1570345653104073951Mouse
1300648Dbsty4_mdiabesity 4 (mouse)Not determined1570349271104073951Mouse
1300726Pitm4_mprion incubation time 4 (mouse)Not determined1570349271104073951Mouse
1302002Cocia2_mcocaine induced activation 2 (mouse)Not determined157237245979899178Mouse
14747011Mancz13_mmandible centroid size 13 (mouse)1572382669104073951Mouse
12791003Aath8_maortic arch atherosclerosis 8 (mouse)1573430144104073951Mouse
15092079Igly6_mIgG glycosylation 6, GP6 (mouse)157410054082674156Mouse
13442492Mecth2_mmechanosensation threshold 2 (mouse)157466284979387201Mouse
1301472Pain1_mpain 1 (mouse)Not determined157532084690813185Mouse
1300851Heal4_mwound healing/regeneration 4 (mouse)Not determined1577527592104073951Mouse
15092080Igly7_mIgG glycosylation 7, GP10 (mouse)157779491982674156Mouse
4142060W3q6_mweight 3 weeks QTL 6 (mouse)Not determined78601103102901704Mouse
1357894Epfpq3_mepididymal fat percentage QTL 3 (mouse)Not determined1578601103102901704Mouse
14928306Manh79_mmandible shape 79 (mouse)1578847557104073951Mouse
12880411V125Dq11_mvitamin D active form serum level QTL 11 (mouse)1578897881104073951Mouse

Markers in Region
U18295  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381579,029,477 - 79,029,639UniSTSGRCm38
MGSCv371578,859,907 - 78,860,069UniSTSGRCm37
Celera1581,131,103 - 81,131,265UniSTS
Cytogenetic Map15E1UniSTS
cM Map1546.75UniSTS
cM Map1546.6UniSTS
Whitehead/MRC_RH15674.95UniSTS
Gcat  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381579,037,299 - 79,038,212UniSTSGRCm38
MGSCv371578,867,729 - 78,868,642UniSTSGRCm37
Celera1581,138,932 - 81,139,845UniSTS
Cytogenetic Map15E1UniSTS
cM Map1546.6UniSTS
PMC117216P2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381579,036,831 - 79,037,248UniSTSGRCm38
MGSCv371578,867,261 - 78,867,678UniSTSGRCm37
Celera1581,138,464 - 81,138,881UniSTS
Cytogenetic Map15E1UniSTS
cM Map1546.6UniSTS
AI526977  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381579,038,174 - 79,038,304UniSTSGRCm38
MGSCv371578,868,604 - 78,868,734UniSTSGRCm37
Celera1581,139,807 - 81,139,937UniSTS
Cytogenetic Map15E1UniSTS
cM Map1546.6UniSTS
Whitehead/MRC_RH15675.85UniSTS
H1f0  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381579,029,452 - 79,029,692UniSTSGRCm38
MGSCv371578,859,882 - 78,860,122UniSTSGRCm37
Celera1581,131,078 - 81,131,318UniSTS
Cytogenetic Map15E1UniSTS
cM Map1546.75UniSTS


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000006544   ⟹   ENSMUSP00000006544
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1578,915,074 - 78,922,553 (+)Ensembl
GRCm38.p6 Ensembl1579,030,874 - 79,038,353 (+)Ensembl
RefSeq Acc Id: ENSMUST00000171999   ⟹   ENSMUSP00000131649
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1578,915,101 - 78,926,731 (+)Ensembl
GRCm38.p6 Ensembl1579,030,901 - 79,042,531 (+)Ensembl
RefSeq Acc Id: ENSMUST00000229276   ⟹   ENSMUSP00000155003
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1578,917,698 - 78,920,513 (+)Ensembl
GRCm38.p6 Ensembl1579,033,498 - 79,036,313 (+)Ensembl
RefSeq Acc Id: NM_001161712   ⟹   NP_001155184
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391578,915,074 - 78,926,731 (+)NCBI
GRCm381579,030,874 - 79,042,531 (+)ENTREZGENE
MGSCv371578,861,304 - 78,872,961 (+)RGD
Celera1581,132,500 - 81,144,160 (+)RGD
cM Map15 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_013847   ⟹   NP_038875
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391578,915,074 - 78,922,556 (+)NCBI
GRCm381579,030,874 - 79,038,356 (+)NCBI
MGSCv371578,861,304 - 78,872,961 (+)RGD
Celera1581,132,500 - 81,144,160 (+)RGD
cM Map15 ENTREZGENE
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_038875   ⟸   NM_013847
- Peptide Label: isoform a
- UniProtKB: O88986 (UniProtKB/Swiss-Prot),   Q9CZ08 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001155184   ⟸   NM_001161712
- Peptide Label: isoform b
- UniProtKB: E9PWY6 (UniProtKB/TrEMBL),   Q9CZ08 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000006544   ⟸   ENSMUST00000006544
RefSeq Acc Id: ENSMUSP00000131649   ⟸   ENSMUST00000171999
RefSeq Acc Id: ENSMUSP00000155003   ⟸   ENSMUST00000229276
Protein Domains
Aminotransferase class I/classII

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-O88986-F1-model_v2 AlphaFold O88986 1-416 view protein structure

Promoters
RGD ID:6826096
Promoter ID:MM_KWN:19034
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000052097,   NM_001161712,   NM_008197,   NM_013847
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361578,857,736 - 78,861,447 (+)MPROMDB
RGD ID:8684306
Promoter ID:EPDNEW_M20184
Type:initiation region
Name:Gcat_1
Description:Mus musculus glycine C-acetyltransferase (2-amino-3-ketobutyrate-coenzymeA ligase) , transcript variant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381579,030,920 - 79,030,980EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1349389 AgrOrtholog
Ensembl Genes ENSMUSG00000006378 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSMUSG00000116378 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000006544 ENTREZGENE
  ENSMUST00000006544.9 UniProtKB/Swiss-Prot
  ENSMUST00000171999 ENTREZGENE
  ENSMUST00000171999.9 UniProtKB/TrEMBL
  ENSMUST00000229276.2 UniProtKB/TrEMBL
Gene3D-CATH 3.40.640.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.90.1150.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro 2am3keto_CoA_ligase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Aminotrans_II_pyridoxalP_BS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Aminotransferase_I/II UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PyrdxlP-dep_Trfase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PyrdxlP-dep_Trfase_dom1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PyrdxlP-dep_Trfase_major UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:26912 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:1349389 ENTREZGENE
NCBI Gene 26912 ENTREZGENE
PANTHER 2-AMINO-3-KETOBUTYRATE COENZYME A LIGASE, MITOCHONDRIAL UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CLASS II AMINOTRANSFERASE/8-AMINO-7-OXONONANOATE SYNTHASE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Aminotran_1_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Gcat PhenoGen
PROSITE AA_TRANSFER_CLASS_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF53383 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A2R8VHE4_MOUSE UniProtKB/TrEMBL
  E9PWY6 ENTREZGENE, UniProtKB/TrEMBL
  KBL_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
  Q9CZ08 ENTREZGENE, UniProtKB/TrEMBL