Zeb2 (zinc finger E-box binding homeobox 2) - Rat Genome Database

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Gene: Zeb2 (zinc finger E-box binding homeobox 2) Mus musculus
Analyze
Symbol: Zeb2
Name: zinc finger E-box binding homeobox 2
RGD ID: 1316369
MGI Page MGI
Description: Enables DNA-binding transcription activator activity, RNA polymerase II-specific and R-SMAD binding activity. Involved in several processes, including melanocyte migration; positive regulation of cell differentiation; and regulation of transcription by RNA polymerase II. Acts upstream of or within several processes, including nervous system development; positive regulation of axonogenesis; and positive regulation of signal transduction. Located in nucleus. Is expressed in several structures, including alimentary system; central nervous system; genitourinary system; limb; and sensory organ. Used to study Mowat-Wilson syndrome and T-cell adult acute lymphocytic leukemia. Human ortholog(s) of this gene implicated in Hirschsprung's disease and Mowat-Wilson syndrome. Orthologous to human ZEB2 (zinc finger E-box binding homeobox 2).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 9130203F04Rik; D130016B08Rik; mKIAA0569; S; SIP1; smad-interacting protein 1; Zfhx1b; Zfx1b; Zfxh1b; zinc finger E-box-binding homeobox 2; zinc finger homeobox 1b; zinc finger homeobox protein 1b
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39244,873,523 - 45,007,378 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl244,873,644 - 45,007,407 (-)EnsemblGRCm39 Ensembl
GRCm38244,983,512 - 45,117,442 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl244,983,632 - 45,117,395 (-)EnsemblGRCm38mm10GRCm38
MGSCv37244,839,154 - 44,968,799 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36244,805,741 - 44,935,025 (-)NCBIMGSCv36mm8
Celera246,695,993 - 46,825,633 (-)NCBICelera
Cytogenetic Map2BNCBI
cM Map227.31NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-beta-thujone  (ISO)
(+)-schisandrin B  (ISO)
(-)-demecolcine  (ISO)
(R)-camphor  (ISO)
(R)-linalyl acetate  (ISO)
1,2-dichloroethane  (EXP)
1,2-dimethylhydrazine  (EXP)
1,8-cineole  (ISO)
1-naphthyl isothiocyanate  (ISO)
17beta-estradiol  (ISO)
17beta-estradiol 3-benzoate  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,2',5,5'-tetrachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3,7,8-Tetrachlorodibenzofuran  (ISO)
2-acetamidofluorene  (ISO)
2-butoxyethanol  (EXP)
3,4-methylenedioxymethamphetamine  (EXP)
3,7-dihydropurine-6-thione  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
3-Nitrobenzanthrone  (ISO)
4,4'-diaminodiphenylmethane  (EXP,ISO)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxyphenyl retinamide  (EXP)
6-propyl-2-thiouracil  (ISO)
7,12-dimethyltetraphene  (ISO)
acetamide  (ISO)
acrolein  (ISO)
acrylamide  (ISO)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
alpha-pinene  (ISO)
angiotensin II  (ISO)
antimycin A  (ISO)
antirheumatic drug  (ISO)
aristolochic acid A  (ISO)
Aroclor 1254  (ISO)
arsane  (EXP,ISO)
arsenic atom  (EXP,ISO)
arsenite(3-)  (ISO)
benzo[a]pyrene  (ISO)
bis(2-ethylhexyl) phthalate  (EXP)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
camphor  (ISO)
carbamazepine  (EXP)
chlordecone  (EXP)
chloroprene  (EXP,ISO)
cholesterol  (ISO)
choline  (EXP)
ciguatoxin CTX1B  (EXP)
cisplatin  (ISO)
Cuprizon  (ISO)
deguelin  (ISO)
deoxynivalenol  (ISO)
dexamethasone  (ISO)
diazinon  (ISO)
Dibutyl phosphate  (ISO)
dibutyl phthalate  (ISO)
dimethyl sulfoxide  (ISO)
disodium selenite  (EXP)
dorsomorphin  (ISO)
doxorubicin  (ISO)
endosulfan  (ISO)
entinostat  (EXP)
ethanol  (EXP)
flusilazole  (EXP)
folic acid  (EXP)
formaldehyde  (ISO)
FR900359  (ISO)
gentamycin  (ISO)
indole-3-methanol  (ISO)
indometacin  (ISO)
L-methionine  (EXP)
levonorgestrel  (ISO)
linalool  (ISO)
linalyl acetate  (ISO)
lithocholic acid  (EXP)
mercaptopurine  (ISO)
mercury dibromide  (ISO)
methoxychlor  (ISO)
methylmercury chloride  (ISO)
MK-2206  (EXP)
N-nitrosodimethylamine  (ISO)
nickel subsulfide  (ISO)
okadaic acid  (EXP)
oxaliplatin  (ISO)
ozone  (EXP,ISO)
p-chloromercuribenzoic acid  (ISO)
p-toluidine  (ISO)
paracetamol  (EXP,ISO)
PCB138  (ISO)
perfluorodecanoic acid  (EXP)
perfluorononanoic acid  (EXP,ISO)
perfluorooctane-1-sulfonic acid  (EXP)
perfluorooctanoic acid  (EXP)
phenobarbital  (EXP,ISO)
phenylmercury acetate  (ISO)
phorbol 13-acetate 12-myristate  (ISO)
picoxystrobin  (ISO)
potassium dichromate  (EXP)
progesterone  (EXP)
purine-6-thiol  (ISO)
pyrimidifen  (ISO)
quercetin  (ISO)
resveratrol  (ISO)
rotenone  (ISO)
sabinene  (ISO)
SB 431542  (ISO)
serpentine asbestos  (ISO)
silicon dioxide  (EXP,ISO)
silver atom  (EXP,ISO)
silver(0)  (EXP,ISO)
sodium arsenite  (ISO)
sorafenib  (EXP)
spathulenol  (ISO)
streptozocin  (EXP,ISO)
succimer  (EXP)
sulforaphane  (ISO)
sunitinib  (ISO)
testosterone  (ISO)
testosterone undecanoate  (ISO)
tetrachloromethane  (EXP)
thifluzamide  (ISO)
thioacetamide  (ISO)
thiram  (ISO)
titanium dioxide  (EXP)
topotecan  (ISO)
troglitazone  (ISO)
valproic acid  (ISO)
zinc atom  (ISO)
zinc(0)  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
astrocyte activation  (ISO)
cell proliferation in forebrain  (IMP)
central nervous system development  (IBA,IGI)
collateral sprouting  (IMP)
corpus callosum morphogenesis  (IMP)
corticospinal tract morphogenesis  (IMP)
developmental pigmentation  (IMP)
embryonic morphogenesis  (IGI)
endothelial cell migration  (ISO)
endothelial cell proliferation  (ISO)
fibroblast activation  (ISO)
hippocampus development  (IMP)
mammillary axonal complex development  (IMP)
melanocyte migration  (IMP)
myofibroblast differentiation  (ISO)
negative regulation of fibroblast migration  (ISO)
negative regulation of transcription by RNA polymerase II  (IMP,ISO)
neural crest cell migration  (IMP)
neural tube closure  (IMP)
positive regulation of axonogenesis  (IMP)
positive regulation of canonical Wnt signaling pathway  (ISO)
positive regulation of JUN kinase activity  (IMP)
positive regulation of lens fiber cell differentiation  (IMP)
positive regulation of melanin biosynthetic process  (IC)
positive regulation of melanocyte differentiation  (IMP)
positive regulation of myofibroblast contraction  (ISO)
positive regulation of transcription by RNA polymerase II  (IMP,ISO)
positive regulation of transforming growth factor beta receptor signaling pathway  (ISO)
positive regulation of Wnt signaling pathway  (IMP)
pyroptotic inflammatory response  (ISO)
regulation of blood-brain barrier permeability  (ISO)
regulation of melanosome organization  (IMP)
regulation of myofibroblast cell apoptotic process  (ISO)
regulation of transcription by RNA polymerase II  (IBA)
response to oxygen-glucose deprivation  (ISO)
somitogenesis  (IMP)
stress fiber assembly  (ISO)

Cellular Component
chromatin  (ISO)
chromosome  (IEA)
cytosol  (ISO)
nucleolus  (ISO)
nucleoplasm  (ISO,TAS)
nucleus  (IDA,ISO)
plasma membrane  (ISO)

References

References - curated
# Reference Title Reference Citation
1. The Ski-Zeb2-Meox2 pathway provides a novel mechanism for regulation of the cardiac myofibroblast phenotype. Cunnington RH, etal., J Cell Sci. 2014 Jan 1;127(Pt 1):40-9. doi: 10.1242/jcs.126722. Epub 2013 Oct 23.
2. ZEB2, interacting with MDM2, contributes to the dysfuntion of brain microvascular endothelial cells and brain injury after intracerebral hemorrhage. Guo Q, etal., Cell Cycle. 2021 Sep;20(17):1692-1707. doi: 10.1080/15384101.2021.1959702. Epub 2021 Aug 2.
3. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
4. MicroRNA-200c-3p inhibits proliferation and migration of renal artery endothelial cells by directly targeting ZEB2. Liu Y, etal., Exp Cell Res. 2020 Feb 15;387(2):111778. doi: 10.1016/j.yexcr.2019.111778. Epub 2019 Dec 25.
5. MGDs mouse GO annotations MGD data from the GO Consortium
6. Cerebral ischemia induces TRPC6 via HIF1α/ZEB2 axis in the glomerular podocytes and contributes to proteinuria. Nakuluri K, etal., Sci Rep. 2019 Nov 29;9(1):17897. doi: 10.1038/s41598-019-52872-5.
7. Prediction of the coding sequences of mouse homologues of KIAA gene: II. The complete nucleotide sequences of 400 mouse KIAA-homologous cDNAs identified by screening of terminal sequences of cDNA clones randomly sampled from size-fractionated libraries. Okazaki N, etal., DNA Res 2003 Feb 28;10(1):35-48.
8. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
9. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
10. Mouse MP Annotation Import Pipeline RGD automated import pipeline
11. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
12. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
13. Involvement of renal corpuscle microRNA expression on epithelial-to-mesenchymal transition in maternal low protein diet in adult programmed rats. Sene Lde B, etal., PLoS One. 2013 Aug 19;8(8):e71310. doi: 10.1371/journal.pone.0071310. eCollection 2013.
14. Mutations in SIP1, encoding Smad interacting protein-1, cause a form of Hirschsprung disease. Wakamatsu N, etal., Nat Genet. 2001 Apr;27(4):369-70.
15. Activation of activin/Smad2 and 3 signaling pathway and the potential involvement of endothelial‑mesenchymal transition in the valvular damage due to rheumatic heart disease. Xian S, etal., Mol Med Rep. 2021 Jan;23(1):10. doi: 10.3892/mmr.2020.11648. Epub 2020 Nov 12.
16. Zinc finger E-Box binding homeobox 2 (ZEB2)-induced astrogliosis protected neuron from pyroptosis in cerebral ischemia and reperfusion injury. Zhao Z, etal., Bioengineered. 2021 Dec;12(2):12917-12930. doi: 10.1080/21655979.2021.2012551.
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10400677   PMID:11042159   PMID:11076861   PMID:11448942   PMID:11451567   PMID:11477103   PMID:11592033   PMID:11857784   PMID:12477932   PMID:12522767  
PMID:12609600   PMID:12714599   PMID:13679026   PMID:14610273   PMID:14681479   PMID:15006694   PMID:15489854   PMID:15618518   PMID:16115198   PMID:16127714   PMID:16141072   PMID:16141073  
PMID:16157277   PMID:16162653   PMID:16458080   PMID:16516881   PMID:16598713   PMID:16901480   PMID:16919269   PMID:16957952   PMID:17131407   PMID:17360662   PMID:17478475   PMID:17585049  
PMID:17615296   PMID:17644613   PMID:18182442   PMID:18250082   PMID:18287559   PMID:18411277   PMID:18799693   PMID:18829540   PMID:19121383   PMID:19334288   PMID:19521566   PMID:19787069  
PMID:19838179   PMID:19864314   PMID:20007546   PMID:20025777   PMID:20059953   PMID:20206619   PMID:20211142   PMID:20459606   PMID:20682777   PMID:21079000   PMID:21233447   PMID:21267068  
PMID:21355089   PMID:21677750   PMID:21747944   PMID:21862221   PMID:21873635   PMID:21905163   PMID:21949878   PMID:22000016   PMID:22261924   PMID:22350174   PMID:22365546   PMID:22546691  
PMID:22561153   PMID:22594450   PMID:22833130   PMID:22992956   PMID:23312517   PMID:23312518   PMID:23386720   PMID:23861142   PMID:24161570   PMID:24243579   PMID:24573695   PMID:24769727  
PMID:24952961   PMID:25082886   PMID:25085976   PMID:25565005   PMID:25741725   PMID:25798844   PMID:25942625   PMID:26212757   PMID:26319231   PMID:26324903   PMID:26446219   PMID:26503444  
PMID:26503445   PMID:26503446   PMID:26812015   PMID:26903501   PMID:26936023   PMID:27185854   PMID:27215389   PMID:27294509   PMID:27294512   PMID:27329940   PMID:27351100   PMID:27370713  
PMID:27385012   PMID:27591083   PMID:27683414   PMID:27739137   PMID:27756750   PMID:27767083   PMID:27806288   PMID:27930303   PMID:28063956   PMID:28412966   PMID:28422173   PMID:28455101  
PMID:28569782   PMID:28671696   PMID:28819210   PMID:28884252   PMID:29031500   PMID:29055695   PMID:29059150   PMID:29196262   PMID:29200203   PMID:29251244   PMID:29326173   PMID:29449309  
PMID:29878134   PMID:29922981   PMID:30056076   PMID:30076102   PMID:30135482   PMID:30271956   PMID:30778251   PMID:30783098   PMID:31118232   PMID:31171776   PMID:31257105   PMID:31393266  
PMID:31406377   PMID:31597102   PMID:31913463   PMID:31924792   PMID:32005677   PMID:32098917   PMID:32149094   PMID:32253238   PMID:32260521   PMID:32325033   PMID:32468660   PMID:32503808  
PMID:32610135   PMID:32628253   PMID:32862581   PMID:32950463   PMID:33158935   PMID:33398012   PMID:33554859   PMID:33773107   PMID:33909875   PMID:33989778   PMID:34004142   PMID:34193422  
PMID:34321999   PMID:34356053   PMID:34550965   PMID:34709266   PMID:34724064   PMID:35121975   PMID:35306455   PMID:35364055   PMID:35377797   PMID:35652338   PMID:35732734   PMID:35997116  
PMID:36418889   PMID:36445780   PMID:36537561   PMID:36683433   PMID:36951067   PMID:36965484   PMID:36980900   PMID:37001814   PMID:37298722   PMID:37432392   PMID:37903859   PMID:37948583  
PMID:37971355   PMID:38060451   PMID:38271512   PMID:38330097   PMID:38355799   PMID:38525813   PMID:39001875   PMID:39059495   PMID:39308239  


Genomics

Comparative Map Data
Zeb2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39244,873,523 - 45,007,378 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl244,873,644 - 45,007,407 (-)EnsemblGRCm39 Ensembl
GRCm38244,983,512 - 45,117,442 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl244,983,632 - 45,117,395 (-)EnsemblGRCm38mm10GRCm38
MGSCv37244,839,154 - 44,968,799 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36244,805,741 - 44,935,025 (-)NCBIMGSCv36mm8
Celera246,695,993 - 46,825,633 (-)NCBICelera
Cytogenetic Map2BNCBI
cM Map227.31NCBI
ZEB2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382144,384,081 - 144,520,119 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2144,364,364 - 144,521,057 (-)EnsemblGRCh38hg38GRCh38
GRCh372145,141,648 - 145,277,686 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362144,862,053 - 144,994,386 (-)NCBINCBI36Build 36hg18NCBI36
Build 342144,979,316 - 145,111,648NCBI
Celera2138,854,690 - 138,990,641 (-)NCBICelera
Cytogenetic Map2q22.3NCBI
HuRef2137,133,063 - 137,270,287 (-)NCBIHuRef
CHM1_12145,147,224 - 145,283,048 (-)NCBICHM1_1
T2T-CHM13v2.02144,832,138 - 144,968,126 (-)NCBIT2T-CHM13v2.0
Zeb2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8349,624,028 - 49,754,323 (-)NCBIGRCr8
mRatBN7.2329,214,581 - 29,344,890 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl329,218,301 - 29,345,157 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx332,612,891 - 32,735,232 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0341,197,919 - 41,320,278 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0339,016,630 - 39,138,985 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0329,857,289 - 29,985,932 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl329,862,473 - 29,996,865 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0335,058,725 - 35,186,767 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4325,513,009 - 25,654,964 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1325,409,380 - 25,556,869 (-)NCBI
Celera327,525,557 - 27,647,939 (-)NCBICelera
Cytogenetic Map3q12NCBI
Zeb2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544010,756,014 - 10,795,491 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495544010,755,658 - 10,881,044 (-)NCBIChiLan1.0ChiLan1.0
ZEB2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21330,393,494 - 30,525,791 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B30,408,606 - 30,544,307 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B15,325,094 - 15,460,908 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B148,460,904 - 148,596,500 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B148,460,904 - 148,596,500 (-)Ensemblpanpan1.1panPan2
ZEB2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11946,419,812 - 46,541,888 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1946,423,998 - 46,542,122 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1946,620,546 - 46,746,041 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01947,879,894 - 48,018,072 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1947,884,370 - 48,018,038 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11946,537,396 - 46,674,974 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01946,668,918 - 46,806,835 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01948,064,344 - 48,202,432 (-)NCBIUU_Cfam_GSD_1.0
Zeb2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303109,245,435 - 109,376,990 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493646932,240,835 - 32,371,267 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493646932,240,730 - 32,372,413 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZEB2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl157,499,026 - 7,632,655 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1157,498,879 - 7,631,347 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2157,946,943 - 8,069,149 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ZEB2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11029,732,934 - 29,864,157 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1029,729,305 - 29,864,205 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666040169,693,241 - 169,827,578 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Zeb2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473244,101,613 - 44,139,997 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473244,097,348 - 44,226,701 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Zeb2
5872 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:5196
Count of miRNA genes:937
Interacting mature miRNAs:1322
Transcripts:ENSMUST00000028229, ENSMUST00000068415, ENSMUST00000076836, ENSMUST00000123037, ENSMUST00000124942, ENSMUST00000126743, ENSMUST00000127520, ENSMUST00000131635, ENSMUST00000145529, ENSMUST00000152232, ENSMUST00000153561, ENSMUST00000176438, ENSMUST00000176732, ENSMUST00000177302
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
8552707Cia23_mcollagen induced arthritis QTL 23 (mouse)Not determined21212953766556453Mouse
12904005Cfq2_mconditioned fear QTL 2 (mouse)22702264256396228Mouse
14746979Manh51_mmandible shape 51 (mouse)22896112962961129Mouse
39128209Lwq14_mliver weight QTL 14 (mouse)220897778118894840Mouse
1558738W6q1_mweight 6 weeks QTL 1 (mouse)Not determined220897778118894840Mouse
11038703Ltpr1_mLeishmania tropica response 1 (mouse)23997166573971811Mouse
1301402Ap2q_malcohol preference 2 QTL (mouse)Not determined24352061277520756Mouse
4142133Pbwg1.6_mpostnatal body weight growth 1.6 (mouse)Not determined3579732469797406Mouse
4141236Hbnr5_mHeligmosomoides bakeri nematode resistance 5 (mouse)Not determined31214567105143570Mouse
26884438Sklq12_mskull length QTL 12, 16 week (mouse)22459001254890012Mouse
1302174Dssc2_mdextran sodium sulfate induced colitis QTL2 (mouse)Not determined224224632148700377Mouse
4142130Pgis2_mproteoglycan induced spondylitis 2 (mouse)Not determined22530805156971811Mouse
1559001Eae33_mexperimental allergic encephalomyelitis susceptibility 33 (mouse)Not determined23599167971609412Mouse
4142447Pbwg1.7_mpostnatal body weight growth 1.7 (mouse)Not determined3579732469797406Mouse
1301376Etohc1_methanol consumption 1 (mouse)Not determined22112972555129871Mouse
1558915W3q1_mweight 3 weeks QTL 1 (mouse)Not determined220897778118894840Mouse
14746997Mancz2_mmandible centroid size 2 (mouse)22896112962961129Mouse
12792980Fbmd1_mfemoral bone mineral density 1, females only (mouse)22503449245034492Mouse
1301769Orgwq2_morgan weight QTL 2 (mouse)Not determined2388712693421651Mouse
1301641Sbmd2_mspinal bone mineral density 2 (mouse)Not determined21421456748214713Mouse
1357454Kidq1_mkidney weight QTL 1 (mouse)Not determined220897778118894840Mouse
10449151Hdl8_mhigh density lipoprotein (HDL) level 8 (mouse)23812972567072607Mouse
1558966W10q9_mweight 10 weeks QTL 9 (mouse)Not determined220897778118894840Mouse
4141854T2dm2sa_mtype 2 diabetes mellitus 2 in SMXA RI mice (mouse)Not determined229307947148374934Mouse
10449150Pvldlc1_mplasma VLDL-cholesterol 1 (mouse)23812972567072607Mouse
13463470Tubisq1_mtubulointerstitial injury severity, QTL 1 (mouse)22368914557689269Mouse
1558899Egq1_mearly growth QTL 1 (mouse)Not determined220897778118894840Mouse
1357681Hrtq1_mheart weight QTL 1 (mouse)Not determined220897778118894840Mouse
10449145Lanq1_mlanosterol level QTL 1 (mouse)23812972567072607Mouse
1301109Dntcs2_mdental caries susceptibility 2 (mouse)Not determined240885493114910165Mouse
1300788Cia2_mcollagen induced arthritis QTL 2 (mouse)Not determined24352061277520756Mouse
1357436Splq1_mspleen weight QTL 1 (mouse)Not determined220897778118894840Mouse
10755532Lymph5_mlymphocyte differential 5 (mouse)24419901778199017Mouse
1300671Cia4_mcollagen induced arthritis QTL 4 (mouse)Not determined24352061277520756Mouse
1357881Estoq1_membryo survival total QTL 1 (mouse)Not determined220897778118894840Mouse
13464253Ifvrq1_minfluenza virus resistance QTL 1 (mouse)23303449252034492Mouse
1301411Pitm1_mprion incubation time 1 (mouse)Not determined24352061277520756Mouse
1300577Capsq1_mcapsaicin sensitivity related QTL 1 (mouse)Not determined22760206084013384Mouse
4141069Pbwg1.5_mpostnatal body weight growth 1.5 (mouse)Not determined4352061277520756Mouse
4141708Pbwg1.2_mpostnatal body weight growth 1.2 (mouse)Not determined2112972555129871Mouse
1301480Pbwg1_mpostnatal body weight growth 1 (mouse)Not determined24182071975820843Mouse
4141186Pbwg1.8_mpostnatal body weight growth 1.8 (mouse)Not determined3579732469797406Mouse

Markers in Region
RH142396  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38244,983,845 - 44,984,036UniSTSGRCm38
MGSCv37244,839,365 - 44,839,556UniSTSGRCm37
Celera246,696,204 - 46,696,395UniSTS
Cytogenetic Map2C1UniSTS
RH141197  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38245,105,393 - 45,105,561UniSTSGRCm38
MGSCv37244,960,913 - 44,961,081UniSTSGRCm37
Celera246,818,099 - 46,818,267UniSTS
Cytogenetic Map2C1UniSTS
SHGC-35092  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38245,070,757 - 45,070,904UniSTSGRCm38
MGSCv37244,926,277 - 44,926,424UniSTSGRCm37
Celera246,783,239 - 46,783,386UniSTS
Cytogenetic Map2C1UniSTS
Zeb2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map2C1UniSTS
Zeb2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map2C1UniSTS
cM Map2 UniSTS
Zeb2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map2C1UniSTS
cM Map2 UniSTS
RH98161  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38245,031,930 - 45,032,202UniSTSGRCm38
MGSCv37244,887,450 - 44,887,722UniSTSGRCm37
Celera246,744,355 - 46,744,620UniSTS
Cytogenetic Map2C1UniSTS
STS-F02845  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38245,075,918 - 45,077,175UniSTSGRCm38
MGSCv37244,931,438 - 44,932,695UniSTSGRCm37
Celera246,788,429 - 46,789,679UniSTS
Cytogenetic Map2C1UniSTS
Zeb2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map2C1UniSTS


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001289521 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001355288 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001355289 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001355290 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001355291 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_015753 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_149354 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AF033116 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ535778 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ535779 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ535780 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ535781 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ535782 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ535783 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ536044 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK012377 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK031541 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK032970 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK033626 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK042553 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK043069 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK044197 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK046644 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK051204 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK051436 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK052619 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK122312 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK135557 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK141157 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK141542 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK157561 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK158309 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK158356 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL929120 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL935127 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC050145 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC060699 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CB245498 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466519 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CJ130482 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000028229   ⟹   ENSMUSP00000028229
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl244,877,135 - 45,000,527 (-)Ensembl
GRCm38.p6 Ensembl244,987,123 - 45,110,515 (-)Ensembl
Ensembl Acc Id: ENSMUST00000068415   ⟹   ENSMUSP00000069685
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl244,877,135 - 45,003,291 (-)Ensembl
GRCm38.p6 Ensembl244,987,123 - 45,113,279 (-)Ensembl
Ensembl Acc Id: ENSMUST00000076836   ⟹   ENSMUSP00000076111
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl244,878,454 - 45,002,902 (-)Ensembl
GRCm38.p6 Ensembl244,988,442 - 45,112,890 (-)Ensembl
Ensembl Acc Id: ENSMUST00000123037
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl244,996,497 - 45,003,013 (-)Ensembl
GRCm38.p6 Ensembl245,106,485 - 45,113,001 (-)Ensembl
Ensembl Acc Id: ENSMUST00000124942
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl244,994,050 - 45,003,228 (-)Ensembl
GRCm38.p6 Ensembl245,104,038 - 45,113,216 (-)Ensembl
Ensembl Acc Id: ENSMUST00000126743
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl245,000,101 - 45,003,520 (-)Ensembl
GRCm38.p6 Ensembl245,110,089 - 45,113,508 (-)Ensembl
Ensembl Acc Id: ENSMUST00000127520   ⟹   ENSMUSP00000120130
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl244,913,001 - 45,003,296 (-)Ensembl
GRCm38.p6 Ensembl245,022,989 - 45,113,284 (-)Ensembl
Ensembl Acc Id: ENSMUST00000131635
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl244,898,610 - 45,001,088 (-)Ensembl
GRCm38.p6 Ensembl245,008,598 - 45,111,076 (-)Ensembl
Ensembl Acc Id: ENSMUST00000145529
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl244,910,909 - 45,003,257 (-)Ensembl
GRCm38.p6 Ensembl245,020,897 - 45,113,245 (-)Ensembl
Ensembl Acc Id: ENSMUST00000152232
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl244,994,050 - 45,000,499 (-)Ensembl
GRCm38.p6 Ensembl245,104,038 - 45,110,487 (-)Ensembl
Ensembl Acc Id: ENSMUST00000153561   ⟹   ENSMUSP00000135491
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl244,985,595 - 45,000,745 (-)Ensembl
GRCm38.p6 Ensembl245,095,583 - 45,110,733 (-)Ensembl
Ensembl Acc Id: ENSMUST00000176438   ⟹   ENSMUSP00000134849
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl244,873,644 - 45,007,407 (-)Ensembl
GRCm38.p6 Ensembl244,983,632 - 45,117,395 (-)Ensembl
Ensembl Acc Id: ENSMUST00000176732   ⟹   ENSMUSP00000135393
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl244,877,133 - 45,002,997 (-)Ensembl
GRCm38.p6 Ensembl244,987,121 - 45,112,985 (-)Ensembl
Ensembl Acc Id: ENSMUST00000177302   ⟹   ENSMUSP00000134747
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl244,878,413 - 45,000,300 (-)Ensembl
GRCm38.p6 Ensembl244,988,401 - 45,110,288 (-)Ensembl
Ensembl Acc Id: ENSMUST00000200844   ⟹   ENSMUSP00000144421
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl244,878,346 - 45,003,014 (-)Ensembl
GRCm38.p6 Ensembl244,988,334 - 45,113,002 (-)Ensembl
Ensembl Acc Id: ENSMUST00000201211   ⟹   ENSMUSP00000144406
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl244,891,794 - 45,000,256 (-)Ensembl
GRCm38.p6 Ensembl245,001,782 - 45,110,244 (-)Ensembl
Ensembl Acc Id: ENSMUST00000201298
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl244,995,277 - 45,000,088 (-)Ensembl
GRCm38.p6 Ensembl245,105,265 - 45,110,076 (-)Ensembl
Ensembl Acc Id: ENSMUST00000201413
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl244,892,693 - 44,944,253 (-)Ensembl
GRCm38.p6 Ensembl245,002,681 - 45,054,241 (-)Ensembl
Ensembl Acc Id: ENSMUST00000201490   ⟹   ENSMUSP00000143976
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl244,913,072 - 45,000,766 (-)Ensembl
GRCm38.p6 Ensembl245,023,060 - 45,110,754 (-)Ensembl
Ensembl Acc Id: ENSMUST00000201623   ⟹   ENSMUSP00000144075
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl244,891,703 - 45,001,186 (-)Ensembl
GRCm38.p6 Ensembl245,001,691 - 45,111,174 (-)Ensembl
Ensembl Acc Id: ENSMUST00000201804   ⟹   ENSMUSP00000144637
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl244,886,817 - 45,000,464 (-)Ensembl
GRCm38.p6 Ensembl244,996,805 - 45,110,452 (-)Ensembl
Ensembl Acc Id: ENSMUST00000201969   ⟹   ENSMUSP00000144141
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl244,892,695 - 45,001,168 (-)Ensembl
GRCm38.p6 Ensembl245,002,683 - 45,111,156 (-)Ensembl
Ensembl Acc Id: ENSMUST00000201982
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl244,994,050 - 45,003,260 (-)Ensembl
GRCm38.p6 Ensembl245,104,038 - 45,113,248 (-)Ensembl
Ensembl Acc Id: ENSMUST00000202187   ⟹   ENSMUSP00000144552
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl244,912,916 - 45,000,639 (-)Ensembl
GRCm38.p6 Ensembl245,022,904 - 45,110,627 (-)Ensembl
Ensembl Acc Id: ENSMUST00000202345
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl244,996,138 - 45,000,496 (-)Ensembl
GRCm38.p6 Ensembl245,106,126 - 45,110,484 (-)Ensembl
Ensembl Acc Id: ENSMUST00000202371
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl244,910,834 - 45,003,101 (-)Ensembl
GRCm38.p6 Ensembl245,020,822 - 45,113,089 (-)Ensembl
Ensembl Acc Id: ENSMUST00000202432   ⟹   ENSMUSP00000144197
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl244,891,728 - 44,912,927 (-)Ensembl
GRCm38.p6 Ensembl245,001,716 - 45,022,915 (-)Ensembl
Ensembl Acc Id: ENSMUST00000202935   ⟹   ENSMUSP00000143841
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl244,907,471 - 45,003,280 (-)Ensembl
GRCm38.p6 Ensembl245,017,459 - 45,113,268 (-)Ensembl
Ensembl Acc Id: ENSMUST00000209076
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl244,891,796 - 44,913,682 (-)Ensembl
GRCm38.p6 Ensembl245,001,784 - 45,023,670 (-)Ensembl
Ensembl Acc Id: ENSMUST00000238346
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl245,006,453 - 45,007,407 (-)Ensembl
GRCm38.p6 Ensembl245,116,441 - 45,117,395 (-)Ensembl
RefSeq Acc Id: NM_001289521   ⟹   NP_001276450
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39244,873,523 - 45,000,372 (-)NCBI
GRCm38244,983,512 - 45,110,277 (-)NCBI
Celera246,695,871 - 46,825,633 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001355288   ⟹   NP_001342217
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39244,873,523 - 45,007,378 (-)NCBI
GRCm38244,983,512 - 45,117,442 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001355289   ⟹   NP_001342218
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39244,873,523 - 45,003,275 (-)NCBI
GRCm38244,983,512 - 45,113,253 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001355290   ⟹   NP_001342219
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39244,873,523 - 45,003,275 (-)NCBI
GRCm38244,983,512 - 45,113,252 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001355291   ⟹   NP_001342220
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39244,873,523 - 45,000,372 (-)NCBI
GRCm38244,983,512 - 45,110,377 (-)NCBI
Sequence:
RefSeq Acc Id: NM_015753   ⟹   NP_056568
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39244,873,523 - 45,003,014 (-)NCBI
GRCm38244,983,512 - 45,113,279 (-)NCBI
MGSCv37244,839,154 - 44,968,799 (-)RGD
Celera246,695,871 - 46,825,633 (-)NCBI
cM Map2 ENTREZGENE
Sequence:
RefSeq Acc Id: NR_149354
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39244,985,595 - 45,000,745 (-)NCBI
GRCm38245,095,583 - 45,110,733 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001276450 (Get FASTA)   NCBI Sequence Viewer  
  NP_001342217 (Get FASTA)   NCBI Sequence Viewer  
  NP_001342218 (Get FASTA)   NCBI Sequence Viewer  
  NP_001342219 (Get FASTA)   NCBI Sequence Viewer  
  NP_001342220 (Get FASTA)   NCBI Sequence Viewer  
  NP_056568 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAD56590 (Get FASTA)   NCBI Sequence Viewer  
  AAH60699 (Get FASTA)   NCBI Sequence Viewer  
  BAC27441 (Get FASTA)   NCBI Sequence Viewer  
  BAC28104 (Get FASTA)   NCBI Sequence Viewer  
  BAC65594 (Get FASTA)   NCBI Sequence Viewer  
  BAE22581 (Get FASTA)   NCBI Sequence Viewer  
  BAE24572 (Get FASTA)   NCBI Sequence Viewer  
  BAE24726 (Get FASTA)   NCBI Sequence Viewer  
  EDL26863 (Get FASTA)   NCBI Sequence Viewer  
  EDL26864 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000028229
  ENSMUSP00000028229.8
  ENSMUSP00000069685
  ENSMUSP00000069685.5
  ENSMUSP00000076111.7
  ENSMUSP00000120130.3
  ENSMUSP00000134747
  ENSMUSP00000134747.2
  ENSMUSP00000134849
  ENSMUSP00000134849.2
  ENSMUSP00000135393.4
  ENSMUSP00000135491.2
  ENSMUSP00000143841.2
  ENSMUSP00000143976.2
  ENSMUSP00000144075.2
  ENSMUSP00000144141.2
  ENSMUSP00000144197.2
  ENSMUSP00000144406.2
  ENSMUSP00000144421.2
  ENSMUSP00000144552.2
  ENSMUSP00000144637.2
GenBank Protein Q9R0G7 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_056568   ⟸   NM_015753
- UniProtKB: Q9R0G7 (UniProtKB/Swiss-Prot),   Q6P9M5 (UniProtKB/Swiss-Prot),   H9H9S3 (UniProtKB/TrEMBL),   Q3URW5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001276450   ⟸   NM_001289521
- UniProtKB: Q9R0G7 (UniProtKB/Swiss-Prot),   Q6P9M5 (UniProtKB/Swiss-Prot),   H9H9S3 (UniProtKB/TrEMBL),   Q3URW5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001342217   ⟸   NM_001355288
- UniProtKB: Q9R0G7 (UniProtKB/Swiss-Prot),   Q6P9M5 (UniProtKB/Swiss-Prot),   H9H9S3 (UniProtKB/TrEMBL),   Q3URW5 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001342218   ⟸   NM_001355289
- UniProtKB: Q9R0G7 (UniProtKB/Swiss-Prot),   Q6P9M5 (UniProtKB/Swiss-Prot),   H9H9S3 (UniProtKB/TrEMBL),   Q3URW5 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001342219   ⟸   NM_001355290
- UniProtKB: Q9R0G7 (UniProtKB/Swiss-Prot),   Q6P9M5 (UniProtKB/Swiss-Prot),   H9H9S3 (UniProtKB/TrEMBL),   Q3URW5 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001342220   ⟸   NM_001355291
- UniProtKB: Q9R0G7 (UniProtKB/Swiss-Prot),   Q6P9M5 (UniProtKB/Swiss-Prot),   H9H9S3 (UniProtKB/TrEMBL),   Q3URW5 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSMUSP00000144197   ⟸   ENSMUST00000202432
Ensembl Acc Id: ENSMUSP00000144552   ⟸   ENSMUST00000202187
Ensembl Acc Id: ENSMUSP00000134747   ⟸   ENSMUST00000177302
Ensembl Acc Id: ENSMUSP00000143841   ⟸   ENSMUST00000202935
Ensembl Acc Id: ENSMUSP00000120130   ⟸   ENSMUST00000127520
Ensembl Acc Id: ENSMUSP00000069685   ⟸   ENSMUST00000068415
Ensembl Acc Id: ENSMUSP00000028229   ⟸   ENSMUST00000028229
Ensembl Acc Id: ENSMUSP00000076111   ⟸   ENSMUST00000076836
Ensembl Acc Id: ENSMUSP00000135491   ⟸   ENSMUST00000153561
Ensembl Acc Id: ENSMUSP00000135393   ⟸   ENSMUST00000176732
Ensembl Acc Id: ENSMUSP00000144406   ⟸   ENSMUST00000201211
Ensembl Acc Id: ENSMUSP00000144141   ⟸   ENSMUST00000201969
Ensembl Acc Id: ENSMUSP00000134849   ⟸   ENSMUST00000176438
Ensembl Acc Id: ENSMUSP00000144637   ⟸   ENSMUST00000201804
Ensembl Acc Id: ENSMUSP00000143976   ⟸   ENSMUST00000201490
Ensembl Acc Id: ENSMUSP00000144075   ⟸   ENSMUST00000201623
Ensembl Acc Id: ENSMUSP00000144421   ⟸   ENSMUST00000200844
Protein Domains
C2H2-type

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9R0G7-F1-model_v2 AlphaFold Q9R0G7 1-1215 view protein structure

Promoters
RGD ID:6833119
Promoter ID:MM_KWN:29105
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   Kidney,   Lung,   MEF_B4,   MEF_B6
Transcripts:OTTMUST00000029415,   OTTMUST00000029416,   OTTMUST00000029417,   OTTMUST00000029419,   OTTMUST00000029433,   UC008JPC.1,   UC008JPD.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36244,964,681 - 44,966,822 (-)MPROMDB
RGD ID:6833122
Promoter ID:MM_KWN:29107
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Kidney,   Lung,   MEF_B6
Transcripts:NM_015753,   OTTMUST00000029412,   OTTMUST00000029418,   UC008JPF.1,   UC008JPG.1,   UC008JPI.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36244,968,371 - 44,969,637 (-)MPROMDB
RGD ID:6831822
Promoter ID:MM_KWN:29108
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Kidney,   Lung,   MEF_B4,   Spleen
Transcripts:ENSMUST00000076836,   UC008JPJ.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36244,972,421 - 44,973,257 (-)MPROMDB
RGD ID:6877248
Promoter ID:EPDNEW_M2075
Type:single initiation site
Name:Zeb2_2
Description:Mus musculus zinc finger E-box binding homeobox 2 , transcriptvariant 4, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M2076  EPDNEW_M2079  EPDNEW_M2080  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38245,103,549 - 45,103,609EPDNEW
RGD ID:6877250
Promoter ID:EPDNEW_M2076
Type:multiple initiation site
Name:Zeb2_3
Description:Mus musculus zinc finger E-box binding homeobox 2 , transcriptvariant 4, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M2075  EPDNEW_M2079  EPDNEW_M2080  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38245,110,348 - 45,110,408EPDNEW
RGD ID:6877256
Promoter ID:EPDNEW_M2079
Type:initiation region
Name:Zeb2_1
Description:Mus musculus zinc finger E-box binding homeobox 2 , transcriptvariant 4, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M2075  EPDNEW_M2076  EPDNEW_M2080  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38245,113,002 - 45,113,062EPDNEW
RGD ID:6877258
Promoter ID:EPDNEW_M2080
Type:initiation region
Name:Zeb2_4
Description:Mus musculus zinc finger E-box binding homeobox 2 , transcriptvariant 4, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M2075  EPDNEW_M2076  EPDNEW_M2079  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38245,117,366 - 45,117,426EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1344407 AgrOrtholog
Ensembl Genes ENSMUSG00000026872 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000028229 ENTREZGENE
  ENSMUST00000028229.13 UniProtKB/TrEMBL
  ENSMUST00000068415 ENTREZGENE
  ENSMUST00000068415.11 UniProtKB/Swiss-Prot
  ENSMUST00000076836.13 UniProtKB/TrEMBL
  ENSMUST00000127520.8 UniProtKB/TrEMBL
  ENSMUST00000153561 ENTREZGENE
  ENSMUST00000153561.6 UniProtKB/TrEMBL
  ENSMUST00000176438 ENTREZGENE
  ENSMUST00000176438.9 UniProtKB/Swiss-Prot
  ENSMUST00000176732.8 UniProtKB/TrEMBL
  ENSMUST00000177302 ENTREZGENE
  ENSMUST00000177302.8 UniProtKB/Swiss-Prot
  ENSMUST00000200844.4 UniProtKB/TrEMBL
  ENSMUST00000201211.4 UniProtKB/TrEMBL
  ENSMUST00000201490.2 UniProtKB/TrEMBL
  ENSMUST00000201623.4 UniProtKB/TrEMBL
  ENSMUST00000201804.4 UniProtKB/TrEMBL
  ENSMUST00000201969.4 UniProtKB/TrEMBL
  ENSMUST00000202187.4 UniProtKB/TrEMBL
  ENSMUST00000202432.4 UniProtKB/TrEMBL
  ENSMUST00000202935.4 UniProtKB/TrEMBL
Gene3D-CATH Classic Zinc Finger UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Homeodomain-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Di19_Zn_binding_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Homeobox-like_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Homeobox_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_C2H2_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_C2H2_type UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZnF_E-box_Homeobox UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:24136 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:1344407 ENTREZGENE
NCBI Gene 24136 ENTREZGENE
PANTHER HISTONE H4 TRANSCRIPTION FACTOR-RELATED UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZINC FINGER E-BOX-BINDING HOMEOBOX 2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam zf-C2H2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  zf-Di19 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Zeb2 PhenoGen
PROSITE ZINC_FINGER_C2H2_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART HOX UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZnF_C2H2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF46689 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF57667 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0J9YTT5_MOUSE UniProtKB/TrEMBL
  A0A0J9YU28_MOUSE UniProtKB/TrEMBL
  A0A0J9YU94_MOUSE UniProtKB/TrEMBL
  A0A0J9YUE5_MOUSE UniProtKB/TrEMBL
  A0A0J9YUI4_MOUSE UniProtKB/TrEMBL
  A0A0J9YUY9_MOUSE UniProtKB/TrEMBL
  A0A0J9YV01_MOUSE UniProtKB/TrEMBL
  A0A0J9YV93_MOUSE UniProtKB/TrEMBL
  A0A0J9YVF6_MOUSE UniProtKB/TrEMBL
  A0A0M3HEP2_MOUSE UniProtKB/TrEMBL
  F6X889_MOUSE UniProtKB/TrEMBL
  H3BKH5_MOUSE UniProtKB/TrEMBL
  H3BKR1_MOUSE UniProtKB/TrEMBL
  H9H9S3 ENTREZGENE, UniProtKB/TrEMBL
  Q3URG2_MOUSE UniProtKB/TrEMBL
  Q3URW5 ENTREZGENE, UniProtKB/TrEMBL
  Q6P9M5 ENTREZGENE
  Q80TX6_MOUSE UniProtKB/TrEMBL
  Q8BSG9_MOUSE UniProtKB/TrEMBL
  Q8CD37_MOUSE UniProtKB/TrEMBL
  Q9R0G7 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary Q6P9M5 UniProtKB/Swiss-Prot