Slc25a44 (solute carrier family 25, member 44) - Rat Genome Database

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Gene: Slc25a44 (solute carrier family 25, member 44) Mus musculus
Analyze
Symbol: Slc25a44
Name: solute carrier family 25, member 44
RGD ID: 1316323
MGI Page MGI
Description: Enables branched-chain amino acid transmembrane transporter activity. Involved in branched-chain amino acid catabolic process; branched-chain amino acid transport; and regulation of cold-induced thermogenesis. Located in mitochondrion. Is expressed in several structures, including central nervous system; metanephros; and retina. Orthologous to human SLC25A44 (solute carrier family 25 member 44).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 6720482A19; B430110G05Rik; solute carrier family 25 member 44
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39388,317,801 - 88,334,303 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl388,317,805 - 88,332,446 (-)EnsemblGRCm39 Ensembl
GRCm38388,410,494 - 88,425,141 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl388,410,498 - 88,425,139 (-)EnsemblGRCm38mm10GRCm38
MGSCv37388,214,417 - 88,229,061 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36388,496,425 - 88,511,045 (-)NCBIMGSCv36mm8
Celera388,450,135 - 88,464,782 (-)NCBICelera
Cytogenetic Map3F1NCBI
cM Map338.82NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. MGDs mouse GO annotations MGD data from the GO Consortium
2. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12477932   PMID:14610273   PMID:15226823   PMID:15489334   PMID:15782199   PMID:16141072  
PMID:16141073   PMID:18614015   PMID:19521566   PMID:21267068   PMID:21873635   PMID:23988125   PMID:25271210   PMID:31435015   PMID:33944778  


Genomics

Comparative Map Data
Slc25a44
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39388,317,801 - 88,334,303 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl388,317,805 - 88,332,446 (-)EnsemblGRCm39 Ensembl
GRCm38388,410,494 - 88,425,141 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl388,410,498 - 88,425,139 (-)EnsemblGRCm38mm10GRCm38
MGSCv37388,214,417 - 88,229,061 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36388,496,425 - 88,511,045 (-)NCBIMGSCv36mm8
Celera388,450,135 - 88,464,782 (-)NCBICelera
Cytogenetic Map3F1NCBI
cM Map338.82NCBI
SLC25A44
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381156,194,104 - 156,212,796 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1156,193,932 - 156,212,796 (+)EnsemblGRCh38hg38GRCh38
GRCh371156,163,895 - 156,182,587 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361154,430,523 - 154,449,211 (+)NCBINCBI36Build 36hg18NCBI36
Celera1129,236,709 - 129,255,567 (+)NCBICelera
Cytogenetic Map1q22NCBI
HuRef1127,525,453 - 127,544,319 (+)NCBIHuRef
CHM1_11157,559,700 - 157,578,555 (+)NCBICHM1_1
T2T-CHM13v2.01155,332,555 - 155,351,250 (+)NCBIT2T-CHM13v2.0
Slc25a44
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82176,166,136 - 176,180,965 (-)NCBIGRCr8
mRatBN7.22173,868,317 - 173,883,137 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2173,868,320 - 173,883,020 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2181,012,522 - 181,027,209 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02179,034,883 - 179,049,570 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02173,634,938 - 173,649,639 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02187,772,013 - 187,786,829 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2187,774,062 - 187,786,731 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02207,174,512 - 207,189,328 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42180,512,111 - 180,526,810 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12180,464,533 - 180,476,814 (-)NCBI
Celera2167,813,048 - 167,827,747 (-)NCBICelera
Cytogenetic Map2q34NCBI
Slc25a44
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555452,347,844 - 2,364,935 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555452,347,951 - 2,364,935 (+)NCBIChiLan1.0ChiLan1.0
SLC25A44
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2193,631,670 - 93,653,209 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1193,363,568 - 93,385,182 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01131,535,399 - 131,556,750 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11135,366,043 - 135,387,643 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1135,366,049 - 135,387,643 (+)Ensemblpanpan1.1panPan2
SLC25A44
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1741,630,868 - 41,665,894 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl741,630,098 - 41,665,791 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha741,118,651 - 41,155,784 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0741,495,306 - 41,532,574 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl741,496,715 - 41,532,560 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1741,276,605 - 41,313,724 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0741,329,782 - 41,366,873 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0741,613,895 - 41,651,236 (-)NCBIUU_Cfam_GSD_1.0
Slc25a44
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505826,405,455 - 26,424,014 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365805,435,730 - 5,454,759 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365805,435,841 - 5,454,396 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC25A44
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl493,837,009 - 93,857,158 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1493,837,004 - 93,857,154 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24102,579,411 - 102,599,563 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SLC25A44
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1207,655,836 - 7,675,356 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl207,655,834 - 7,675,190 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660386,950,036 - 6,969,703 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Slc25a44
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248851,500,255 - 1,517,481 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248851,500,837 - 1,517,481 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Slc25a44
357 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1655
Count of miRNA genes:517
Interacting mature miRNAs:586
Transcripts:ENSMUST00000057935, ENSMUST00000168755
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
26884436Zlq3_mzygomatic length QTL 3, 10 week (mouse)33265060142405761Mouse
4142399Aec1_mautoimmune exocrinopathy 1 (mouse)Not determined7586174102690034Mouse
26884427Cvht4_mcranial vault height 4, 10 week (mouse)316054164109707316Mouse
13207570Tcq12_mtotal cholesterol QTL 12 (mouse)316504164130163649Mouse
26884422Cvht7_mcranial vault height 7, 16 week (mouse)328954149118893649Mouse
1302056Orgwq4_morgan weight QTL 4 (mouse)Not determined330067588147304689Mouse
1301705Sles3_msystemic lupus erythmatosus suppressor 3 (mouse)Not determined337174862143353183Mouse
13208566Bmiq5_mbody mass index QTL 5 (mouse)340954435115793649Mouse
26884380Skwq1_mskull length QTL 1, 5 week (mouse)343954435101607316Mouse
26884378Skwq6_mskull length QTL 6, 10 week (mouse)351907421102307316Mouse
26884382Bzwq1_mbi-zygomatic width QTL 1, 5 week (mouse)352207421137205761Mouse
11039519Ltpr3_mLeishmania tropica response 3 (mouse)356704102100464137Mouse
12880419V125Dq4_mvitamin D active form serum level QTL 4 (mouse)35890730792907307Mouse
4141294Bmd24_mbone mineral density 24 (mouse)Not determined36174006195740241Mouse
1301971Cia5_mcollagen induced arthritis QTL 5 (mouse)Not determined366046658100046795Mouse
25314313Syncl1_msynaptonemal complex length 1 (mouse)367907333128393649Mouse
11251721Ewc3_methanol withdrawal and consumption 3 (mouse)369568554103568554Mouse
1301791Char4_mP. chabaudi malaria resistance QTL 4 (mouse)Not determined369625509100655290Mouse
1301422Sle11_msystematic lupus erythematosus susceptibility 11 (mouse)Not determined370208904104209042Mouse
11049572Lmr11c_mleishmaniasis resistance 11c (mouse)372139967106140094Mouse
1300982Lmr11_mleishmaniasis resistance 11 (mouse)Not determined372139967106140094Mouse
1300595Tmevd2_mTheiler's murine encephalomyelitis virus induced demyelinating disease susceptibility 2 (mouse)Not determined375463302109463549Mouse
1301392Eae3_msusceptibility to experimental allergic encephalomyelitis 3 (mouse)Not determined379548730113548837Mouse
1301947Pcfm3_mperiosteal circumference and femur length 3 (mouse)Not determined381084652115084797Mouse
1301904Iba2_minduction of brown adipocytes 2 (mouse)Not determined382147043116147184Mouse
11041900Lmr11a_mleishmaniasis resistance 11a (mouse)383463991117464137Mouse
11039510Ltpr3d_mLeishmania tropica response 3d (mouse)383463991117464137Mouse
11039511Ltpr3c_mLeishmania tropica response 3c (mouse)383463991117464137Mouse
11039507Ltpr3g_mLeishmania tropica response 3g (mouse)383463991117464137Mouse
11039508Ltpr3f_mLeishmania tropica response 3f (mouse)383463991117464137Mouse
11039509Ltpr3e_mLeishmania tropica response 3e (mouse)383463991117464137Mouse
11039512Ltpr3b_mLeishmania tropica response 3b (mouse)383463991117464137Mouse
1301272Cfsw1_mcystic fibrosis survival to weaning 1 (mouse)Not determined383882912117883044Mouse
4142099Cq3_mcholesterol QTL 3 (mouse)Not determined384888918118889067Mouse
14746984Manh54_mmandible shape 54 (mouse)385289152119289152Mouse
10043981Cia5a_mcollagen induced arthritis QTL 5a (mouse)Not determined38717045489140094Mouse
1357583Sle18_msystematic lupus erythematosus susceptibility 18 (mouse)Not determined387208904125316236Mouse
12738440Twq3_mtestis weight QTL 3 (mouse)387228015121228015Mouse

Markers in Region
UniSTS:234725  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38388,412,163 - 88,412,289UniSTSGRCm38
MGSCv37388,216,085 - 88,216,211UniSTSGRCm37
Celera388,451,804 - 88,451,930UniSTS
Cytogenetic Map3F1UniSTS
Slc25a44  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map3F1UniSTS
cM Map338.82UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001145876 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001145877 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001281795 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001357749 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_178696 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030252574 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030252575 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036163051 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC102388 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK032960 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK044648 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK046586 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK079532 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK083273 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK083470 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK134914 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK144731 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK165159 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK166011 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK166331 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK168955 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK169886 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK170066 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK180916 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK188279 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK190462 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK197940 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK205212 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK215205 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC012234 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC052771 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY249366 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY285266 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY639336 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466547 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CJ075826 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSMUST00000057935   ⟹   ENSMUSP00000057871
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl388,317,806 - 88,332,446 (-)Ensembl
GRCm38.p6 Ensembl388,410,499 - 88,425,139 (-)Ensembl
RefSeq Acc Id: ENSMUST00000168755   ⟹   ENSMUSP00000130075
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl388,317,805 - 88,332,414 (-)Ensembl
GRCm38.p6 Ensembl388,410,498 - 88,425,107 (-)Ensembl
RefSeq Acc Id: ENSMUST00000193433   ⟹   ENSMUSP00000141465
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl388,317,805 - 88,332,415 (-)Ensembl
GRCm38.p6 Ensembl388,410,498 - 88,425,108 (-)Ensembl
RefSeq Acc Id: ENSMUST00000195657   ⟹   ENSMUSP00000141780
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl388,317,806 - 88,332,419 (-)Ensembl
GRCm38.p6 Ensembl388,410,499 - 88,425,112 (-)Ensembl
RefSeq Acc Id: NM_001145876   ⟹   NP_001139348
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39388,317,801 - 88,332,448 (-)NCBI
GRCm38388,410,494 - 88,425,141 (-)NCBI
MGSCv37388,214,417 - 88,229,061 (-)RGD
Celera388,450,134 - 88,464,784 (-)NCBI
cM Map3 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001145877   ⟹   NP_001139349
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39388,317,801 - 88,332,448 (-)NCBI
GRCm38388,410,494 - 88,425,141 (-)NCBI
MGSCv37388,214,417 - 88,229,061 (-)RGD
Celera388,450,134 - 88,464,784 (-)NCBI
cM Map3 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001281795   ⟹   NP_001268724
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39388,317,801 - 88,332,448 (-)NCBI
GRCm38388,410,494 - 88,425,141 (-)NCBI
Celera388,450,134 - 88,464,784 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001357749   ⟹   NP_001344678
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39388,317,801 - 88,332,448 (-)NCBI
GRCm38388,410,494 - 88,425,141 (-)NCBI
Sequence:
RefSeq Acc Id: NM_178696   ⟹   NP_848811
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39388,317,801 - 88,332,448 (-)NCBI
GRCm38388,410,494 - 88,425,141 (-)NCBI
MGSCv37388,214,417 - 88,229,061 (-)RGD
Celera388,450,134 - 88,464,784 (-)NCBI
cM Map3 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_030252574   ⟹   XP_030108434
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39388,317,802 - 88,334,303 (-)NCBI
GRCm38388,410,495 - 88,425,115 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030252575   ⟹   XP_030108435
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39388,317,802 - 88,332,423 (-)NCBI
GRCm38388,410,495 - 88,425,107 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036163051   ⟹   XP_036018944
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39388,317,802 - 88,332,423 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001139348 (Get FASTA)   NCBI Sequence Viewer  
  NP_001139349 (Get FASTA)   NCBI Sequence Viewer  
  NP_001268724 (Get FASTA)   NCBI Sequence Viewer  
  NP_001344678 (Get FASTA)   NCBI Sequence Viewer  
  NP_848811 (Get FASTA)   NCBI Sequence Viewer  
  XP_030108434 (Get FASTA)   NCBI Sequence Viewer  
  XP_030108435 (Get FASTA)   NCBI Sequence Viewer  
  XP_036018944 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH12234 (Get FASTA)   NCBI Sequence Viewer  
  AAH52771 (Get FASTA)   NCBI Sequence Viewer  
  BAC28100 (Get FASTA)   NCBI Sequence Viewer  
  BAC32798 (Get FASTA)   NCBI Sequence Viewer  
  BAC38838 (Get FASTA)   NCBI Sequence Viewer  
  BAC38927 (Get FASTA)   NCBI Sequence Viewer  
  BAE22336 (Get FASTA)   NCBI Sequence Viewer  
  BAE38054 (Get FASTA)   NCBI Sequence Viewer  
  BAE38518 (Get FASTA)   NCBI Sequence Viewer  
  BAE38711 (Get FASTA)   NCBI Sequence Viewer  
  BAE40761 (Get FASTA)   NCBI Sequence Viewer  
  BAE41436 (Get FASTA)   NCBI Sequence Viewer  
  BAE41542 (Get FASTA)   NCBI Sequence Viewer  
  EDL15281 (Get FASTA)   NCBI Sequence Viewer  
  EDL15282 (Get FASTA)   NCBI Sequence Viewer  
  EDL15283 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000057871
  ENSMUSP00000057871.7
  ENSMUSP00000130075
  ENSMUSP00000130075.2
  ENSMUSP00000141465
  ENSMUSP00000141465.2
  ENSMUSP00000141780
  ENSMUSP00000141780.2
GenBank Protein Q8BGF9 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_848811   ⟸   NM_178696
- Peptide Label: isoform a
- UniProtKB: Q3TMC4 (UniProtKB/TrEMBL),   Q3TE12 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001139348   ⟸   NM_001145876
- Peptide Label: isoform b
- UniProtKB: Q7TSU9 (UniProtKB/Swiss-Prot),   Q8BGF9 (UniProtKB/Swiss-Prot),   Q3TE12 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001139349   ⟸   NM_001145877
- Peptide Label: isoform c
- UniProtKB: Q3TNN4 (UniProtKB/TrEMBL),   Q05DJ3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001268724   ⟸   NM_001281795
- Peptide Label: isoform b
- UniProtKB: Q7TSU9 (UniProtKB/Swiss-Prot),   Q8BGF9 (UniProtKB/Swiss-Prot),   Q3TE12 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001344678   ⟸   NM_001357749
- Peptide Label: isoform d
- UniProtKB: Q05DJ3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_030108434   ⟸   XM_030252574
- Peptide Label: isoform X2
- UniProtKB: Q05DJ3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_030108435   ⟸   XM_030252575
- Peptide Label: isoform X2
- UniProtKB: Q05DJ3 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSMUSP00000130075   ⟸   ENSMUST00000168755
RefSeq Acc Id: ENSMUSP00000141465   ⟸   ENSMUST00000193433
RefSeq Acc Id: ENSMUSP00000141780   ⟸   ENSMUST00000195657
RefSeq Acc Id: ENSMUSP00000057871   ⟸   ENSMUST00000057935
RefSeq Acc Id: XP_036018944   ⟸   XM_036163051
- Peptide Label: isoform X1
- UniProtKB: Q05DJ3 (UniProtKB/TrEMBL)

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8BGF9-F1-model_v2 AlphaFold Q8BGF9 1-314 view protein structure

Promoters
RGD ID:6834470
Promoter ID:MM_KWN:34847
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000107536,   NM_001145876,   NM_001145877,   NM_178696,   NR_027357
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36388,228,921 - 88,229,547 (-)MPROMDB
RGD ID:6881138
Promoter ID:EPDNEW_M4020
Type:multiple initiation site
Name:Slc25a44_1
Description:Mus musculus solute carrier family 25, member 44 , transcriptvariant 3, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38388,425,117 - 88,425,177EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2444391 AgrOrtholog
Ensembl Genes ENSMUSG00000050144 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000057935 ENTREZGENE
  ENSMUST00000057935.9 UniProtKB/TrEMBL
  ENSMUST00000168755 ENTREZGENE
  ENSMUST00000168755.7 UniProtKB/TrEMBL
  ENSMUST00000193433 ENTREZGENE
  ENSMUST00000193433.6 UniProtKB/Swiss-Prot
  ENSMUST00000195657 ENTREZGENE
  ENSMUST00000195657.6 UniProtKB/Swiss-Prot
Gene3D-CATH 1.50.40.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Mit_carrier UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Mitochondrial_sb/sol_carrier UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Mt_carrier_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SLC25A44 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:229517 UniProtKB/Swiss-Prot
MGD MGI:2444391 ENTREZGENE
NCBI Gene 229517 ENTREZGENE
PANTHER PTHR46314 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SOLUTE CARRIER FAMILY 25 MEMBER 44 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Mito_carr UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Slc25a44 PhenoGen
PRINTS MITOCARRIER UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE SOLCAR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF103506 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt Q05DJ3 ENTREZGENE, UniProtKB/TrEMBL
  Q3TDQ9_MOUSE UniProtKB/TrEMBL
  Q3TE12 ENTREZGENE, UniProtKB/TrEMBL
  Q3TMC4 ENTREZGENE, UniProtKB/TrEMBL
  Q3TNN4 ENTREZGENE, UniProtKB/TrEMBL
  Q7TSU9 ENTREZGENE
  Q8BGF9 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary Q7TSU9 UniProtKB/Swiss-Prot