Cbarp (calcium channel, voltage-dependent, beta subunit associated regulatory protein) - Rat Genome Database

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Gene: Cbarp (calcium channel, voltage-dependent, beta subunit associated regulatory protein) Mus musculus
Analyze
Symbol: Cbarp
Name: calcium channel, voltage-dependent, beta subunit associated regulatory protein
RGD ID: 1316226
MGI Page MGI
Description: Enables transmembrane transporter binding activity. Involved in negative regulation of calcium ion-dependent exocytosis and negative regulation of voltage-gated calcium channel activity. Located in plasma membrane and secretory granule. Colocalizes with growth cone. Is expressed in nervous system. Orthologous to human CBARP (CACN subunit beta associated regulatory protein); INTERACTS WITH 1,2-dimethylhydrazine; 2,3,7,8-tetrachlorodibenzodioxine; 3,3',5,5'-tetrabromobisphenol A.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: 9630008F14; D; Dos; downstream of Stk11 protein; MGC118572; protein Dos-like; R29144/; R29144/1
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391079,966,268 - 79,976,189 (-)NCBIGRCm39mm39
GRCm39 Ensembl1079,966,285 - 79,976,669 (-)Ensembl
GRCm381080,130,434 - 80,140,355 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1080,130,451 - 80,140,835 (-)EnsemblGRCm38mm10GRCm38
MGSCv371079,590,603 - 79,602,234 (-)NCBIGRCm37mm9NCBIm37
MGSCv361079,593,179 - 79,598,128 (-)NCBImm8
Celera1081,142,690 - 81,154,321 (-)NCBICelera
Cytogenetic Map10C1NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
1. RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10400995   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12040188   PMID:12466851   PMID:12477932   PMID:14610273   PMID:15489334  
PMID:16141072   PMID:16141073   PMID:17114649   PMID:19367708   PMID:21267068   PMID:21873635   PMID:24751537   PMID:26136667   PMID:30673609   PMID:33074244  


Genomics

Comparative Map Data
Cbarp
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391079,966,268 - 79,976,189 (-)NCBIGRCm39mm39
GRCm39 Ensembl1079,966,285 - 79,976,669 (-)Ensembl
GRCm381080,130,434 - 80,140,355 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1080,130,451 - 80,140,835 (-)EnsemblGRCm38mm10GRCm38
MGSCv371079,590,603 - 79,602,234 (-)NCBIGRCm37mm9NCBIm37
MGSCv361079,593,179 - 79,598,128 (-)NCBImm8
Celera1081,142,690 - 81,154,321 (-)NCBICelera
Cytogenetic Map10C1NCBI
CBARP
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl191,228,287 - 1,238,027 (-)EnsemblGRCh38hg38GRCh38
GRCh38191,228,287 - 1,238,512 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37191,228,286 - 1,238,004 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36191,180,947 - 1,188,990 (-)NCBINCBI36hg18NCBI36
Build 34191,180,954 - 1,188,841NCBI
Celera191,164,180 - 1,172,223 (-)NCBI
Cytogenetic Map19p13.3NCBI
HuRef191,005,343 - 1,039,838 (-)NCBIHuRef
CHM1_1191,229,860 - 1,237,926 (-)NCBICHM1_1
Cbarp
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.279,566,637 - 9,575,204 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl79,566,364 - 9,575,204 (+)Ensembl
Rnor_6.0712,433,422 - 12,441,048 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl712,433,933 - 12,441,048 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0712,603,527 - 12,611,153 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4711,079,431 - 11,087,057 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1711,079,064 - 11,086,662 (+)NCBI
Celera77,743,241 - 7,750,842 (+)NCBICelera
Cytogenetic Map7q11NCBI
Cbarp
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554956,671,726 - 6,677,205 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554956,671,719 - 6,678,338 (+)NCBIChiLan1.0ChiLan1.0
LOC100989336
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1191,212,854 - 1,220,108 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl191,212,854 - 1,220,104 (-)Ensemblpanpan1.1panPan2
CBARP
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12057,554,162 - 57,559,126 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2057,554,032 - 57,559,612 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2057,352,590 - 57,361,543 (+)NCBI
ROS_Cfam_1.02058,292,499 - 58,301,436 (+)NCBI
UMICH_Zoey_3.12057,348,311 - 57,356,988 (+)NCBI
UNSW_CanFamBas_1.02057,827,591 - 57,836,230 (+)NCBI
UU_Cfam_GSD_1.02058,030,594 - 58,039,504 (+)NCBI
LOC101976074
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118217,216,615 - 217,233,911 (+)NCBI
SpeTri2.0NW_004936588601,108 - 607,823 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CBARP
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl277,221,171 - 77,230,056 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1277,220,790 - 77,230,418 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2277,823,483 - 77,831,001 (-)NCBISscrofa10.2Sscrofa10.2susScr3
LOC103233598
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.16999,327 - 1,006,632 (-)NCBIChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660817,857,295 - 7,864,976 (+)NCBIVero_WHO_p1.0
Cbarp
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248287,435,633 - 7,444,483 (+)NCBIHetGla_female_1.0hetGla2

Position Markers
Stk11  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381080,137,642 - 80,137,771UniSTSGRCm38
MGSCv371079,600,387 - 79,600,516UniSTSGRCm37
Celera1081,152,474 - 81,152,603UniSTS
Cytogenetic Map10C1UniSTS
cM Map10 UniSTS
RH125172  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381080,130,363 - 80,130,658UniSTSGRCm38
MGSCv371079,593,108 - 79,593,403UniSTSGRCm37
Celera1081,145,195 - 81,145,490UniSTS
Cytogenetic Map10C1UniSTS
RH125759  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381080,130,437 - 80,130,573UniSTSGRCm38
MGSCv371079,593,182 - 79,593,318UniSTSGRCm37
Celera1081,145,269 - 81,145,405UniSTS
Cytogenetic Map10C1UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357740Obsty3_mobesity 3 (mouse)Not determined108359714116355075Mouse
1301386Sysbp1_msystolic blood pressure 1 (mouse)Not determined101023252187565233Mouse
1357825Kidpq2_mkidney weight percentage QTL 2 (mouse)Not determined101282830784243920Mouse
1357656Hrtq3_mheart weight QTL 3 (mouse)Not determined101282830784243920Mouse
1357864Scfpq1_msubcutaneous fat pad percentage QTL 1 (mouse)Not determined101282830784243920Mouse
1357893Lvrq4_mliver weight QTL 4 (mouse)Not determined101282830784243920Mouse
4142380W3q11_mweight 3 weeks QTL 11 (mouse)Not determined1282830784243920Mouse
4141943W6q6_mweight 6 weeks QTL 6 (mouse)Not determined1282830784243920Mouse
4141956Egq7_mearly growth QTL 7 (mouse)Not determined1282830784243920Mouse
4142272W10q5_mweight 10 weeks QTL 5 (mouse)Not determined1282830784243920Mouse
39128215Lwq17_mliver weight QTL 17 (mouse)101282830784243920Mouse
1302067Scc9_mcolon tumor susceptibility 9 (mouse)Not determined1018383585125739363Mouse
27226772Tibl13_mtibia length 13, 10 week (mouse)1019000000129800000Mouse
1558757Eae34_mexperimental allergic encephalomyelitis susceptibility 34 (mouse)Not determined1021532255114381325Mouse
26884403Cvht8_mcranial vault height 8, 16 week (mouse)102300000091200000Mouse
26884426Cvht1_mcranial vault height 1, 5 week (mouse)1024800000121200000Mouse
27095911Pglq15_mpelvic girdle length QTL 15, 16 week (mouse)1039300000129800000Mouse
27226764Tibl19_mtibia length 19, 16 week (mouse)1039300000129800000Mouse
26884411Bzwq8_mbi-zygomatic width QTL 8, 10 week (mouse)1045000000116100000Mouse
26884407Bzwq14_mbi-zygomatic width QTL 14, 16 wee (mouse)1045600000120800000Mouse
4142313Angvq1_mangiogenesis by VEGF QTL 1 (mouse)Not determined4684430782655287Mouse
1302150Bbaa18_mB.burgdorferi-associated arthritis 18 (mouse)Not determined104950223383502378Mouse
4142169Pbwg16_mpostnatal body weight growth 16 (mouse)Not determined105001240884012633Mouse
1300597Skull14_mskull morphology 14 (mouse)Not determined105001240884012633Mouse
10045641Jckm3_mjuvenile cystic kidney modifier 3 (mouse)Not determined105001240884012633Mouse
1301966Lifespan2_mlife span 2 (mouse)Not determined105001244384012618Mouse
1357737Hpcr2_mhepatocarcinogen resistance 2 (mouse)Not determined105001244384012618Mouse
1300882Ath17_matherosclerosis 17 (mouse)Not determined105125566085255809Mouse
1301502Eae17_msusceptibility to experimental allergic encephalomyelitis 17 (mouse)Not determined105125566085255809Mouse
1301380Cia8_mcollagen induced arthritis QTL 8 (mouse)Not determined105161730482655287Mouse
14746991Manh68_mmandible shape 68 (mouse)105244466786444667Mouse
1301787Bsc1_mbrain size control 1 (mouse)Not determined105868113592681262Mouse
26884450Sklq15_mskull length QTL 15, 16 week (mouse)1059500000122500000Mouse
13208560Wght9_mweight 9 (mouse)1060000000121000000Mouse
26884424Zlq9_mzygomatic length QTL 9, 16 week (mouse)1064100000116100000Mouse
1302060El3_mepilepsy 3 (mouse)Not determined106565510499655287Mouse
1300533Aem3_manti-erythrocyte autoantibody modifier 3 (mouse)Not determined106565510499655287Mouse
1301737Insq9_minsulin QTL 9 (mouse)Not determined106565510499655287Mouse
1302035Lmb4_mlupus in MRL and B6 F2 cross (mouse)Not determined106701240892422811Mouse
26884447Sklq9_mskull length QTL 9, 10 week (mouse)1067500000111900000Mouse
26884430Zlq5_mzygomatic length QTL 5, 10 week (mouse)1068000000125000000Mouse
26884405Huml2_mhumerus length 2, 5 week (mouse)1069900000132500000Mouse
11039497Ltpr5a_mLeishmania tropica response 5a (mouse)1073671039107671185Mouse
4142107Obrq12_mobesity resistance QTL 12 (mouse)Not determined7415138482655287Mouse
11353832Pcholq4_mplasma cholesterol QTL 4 (mouse)1074151384125680038Mouse
11353843Gluq1_mblood glucose QTL 1 (mouse)1074151384125680038Mouse
1300975Fembrs3_mfemur breaking strength 3 (mouse)Not determined1075502706109502905Mouse
4142137Femwf3_mfemur work to failure 3 (mouse)Not determined75502706109502905Mouse
1357632Vtbt9_mvertebral trabecular bone trait 9 (mouse)Not determined1075502706109502905Mouse
11251717Siim1_mstress induced immobility 1 (mouse)1078545406112545406Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:4264
Count of miRNA genes:771
Interacting mature miRNAs:971
Transcripts:ENSMUST00000105369, ENSMUST00000123967, ENSMUST00000127515, ENSMUST00000128465, ENSMUST00000128488, ENSMUST00000132317, ENSMUST00000132523, ENSMUST00000136260, ENSMUST00000138776, ENSMUST00000142853, ENSMUST00000146180, ENSMUST00000147778, ENSMUST00000149242, ENSMUST00000169546, ENSMUST00000170219
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001195268 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_036582 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006512965 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006512967 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006512968 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006512969 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006512970 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006512971 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006512972 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006512973 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006512974 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006512976 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006512977 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030244789 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030244790 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030244791 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC159999 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF145697 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK035824 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK137009 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC024795 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC026893 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC039779 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC052075 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC078442 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC100552 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BM947270 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY274870 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY280734 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466553 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000105369   ⟹   ENSMUSP00000101008
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1079,966,385 - 79,975,199 (-)Ensembl
GRCm38.p6 Ensembl1080,130,551 - 80,139,365 (-)Ensembl
RefSeq Acc Id: ENSMUST00000123967   ⟹   ENSMUSP00000125962
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1079,970,992 - 79,975,012 (-)Ensembl
GRCm38.p6 Ensembl1080,135,158 - 80,139,178 (-)Ensembl
RefSeq Acc Id: ENSMUST00000127515
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1079,972,708 - 79,973,428 (-)Ensembl
GRCm38.p6 Ensembl1080,136,874 - 80,137,594 (-)Ensembl
RefSeq Acc Id: ENSMUST00000128465
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1079,972,497 - 79,973,186 (-)Ensembl
GRCm38.p6 Ensembl1080,136,663 - 80,137,352 (-)Ensembl
RefSeq Acc Id: ENSMUST00000128488
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1079,972,479 - 79,973,745 (-)Ensembl
GRCm38.p6 Ensembl1080,136,645 - 80,137,911 (-)Ensembl
RefSeq Acc Id: ENSMUST00000132317
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1079,968,908 - 79,971,422 (-)Ensembl
GRCm38.p6 Ensembl1080,133,074 - 80,135,588 (-)Ensembl
RefSeq Acc Id: ENSMUST00000132523   ⟹   ENSMUSP00000128980
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1079,970,952 - 79,975,197 (-)Ensembl
GRCm38.p6 Ensembl1080,135,118 - 80,139,363 (-)Ensembl
RefSeq Acc Id: ENSMUST00000136260
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1079,972,542 - 79,973,481 (-)Ensembl
GRCm38.p6 Ensembl1080,136,708 - 80,137,647 (-)Ensembl
RefSeq Acc Id: ENSMUST00000138776
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1079,973,181 - 79,974,450 (-)Ensembl
GRCm38.p6 Ensembl1080,137,347 - 80,138,616 (-)Ensembl
RefSeq Acc Id: ENSMUST00000142853   ⟹   ENSMUSP00000115009
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1079,973,181 - 79,976,669 (-)Ensembl
GRCm38.p6 Ensembl1080,137,347 - 80,140,835 (-)Ensembl
RefSeq Acc Id: ENSMUST00000146180
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1079,968,370 - 79,970,515 (-)Ensembl
GRCm38.p6 Ensembl1080,132,536 - 80,134,681 (-)Ensembl
RefSeq Acc Id: ENSMUST00000147778   ⟹   ENSMUSP00000130389
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1079,966,385 - 79,975,199 (-)Ensembl
GRCm38.p6 Ensembl1080,130,551 - 80,139,365 (-)Ensembl
RefSeq Acc Id: ENSMUST00000149242
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1079,971,350 - 79,973,758 (-)Ensembl
GRCm38.p6 Ensembl1080,135,516 - 80,137,924 (-)Ensembl
RefSeq Acc Id: ENSMUST00000169546   ⟹   ENSMUSP00000132978
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1079,966,285 - 79,973,221 (-)Ensembl
GRCm38.p6 Ensembl1080,130,451 - 80,137,387 (-)Ensembl
RefSeq Acc Id: ENSMUST00000170219   ⟹   ENSMUSP00000131487
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1079,966,285 - 79,973,221 (-)Ensembl
GRCm38.p6 Ensembl1080,130,451 - 80,137,387 (-)Ensembl
RefSeq Acc Id: NM_001195268   ⟹   NP_001182197
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391079,966,268 - 79,973,221 (-)NCBI
GRCm381080,130,434 - 80,137,387 (-)NCBI
Celera1081,145,266 - 81,154,199 (-)ENTREZGENE
cM Map10 ENTREZGENE
Sequence:
RefSeq Acc Id: NR_036582
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391079,966,268 - 79,975,201 (-)NCBI
GRCm381080,130,434 - 80,139,367 (-)NCBI
Celera1081,145,266 - 81,154,199 (-)ENTREZGENE
cM Map10 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006512965   ⟹   XP_006513028
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391079,966,382 - 79,975,318 (-)NCBI
GRCm381080,130,548 - 80,139,484 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006512967   ⟹   XP_006513030
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391079,966,383 - 79,974,458 (-)NCBI
GRCm381080,130,549 - 80,138,653 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006512968   ⟹   XP_006513031
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391079,966,382 - 79,973,939 (-)NCBI
GRCm381080,130,548 - 80,138,106 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006512969   ⟹   XP_006513032
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391079,966,382 - 79,976,189 (-)NCBI
GRCm381080,130,548 - 80,140,355 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006512970   ⟹   XP_006513033
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391079,966,382 - 79,975,222 (-)NCBI
GRCm381080,130,549 - 80,139,388 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006512971   ⟹   XP_006513034
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391079,966,382 - 79,973,695 (-)NCBI
GRCm381080,130,549 - 80,137,861 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006512972   ⟹   XP_006513035
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391079,966,382 - 79,973,939 (-)NCBI
GRCm381080,130,549 - 80,138,106 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006512973   ⟹   XP_006513036
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391079,967,741 - 79,975,318 (-)NCBI
GRCm381080,131,907 - 80,139,484 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006512974   ⟹   XP_006513037
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391079,966,382 - 79,975,249 (-)NCBI
GRCm381080,130,549 - 80,139,415 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006512976   ⟹   XP_006513039
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391079,966,382 - 79,973,935 (-)NCBI
GRCm381080,130,548 - 80,138,101 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006512977   ⟹   XP_006513040
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391079,966,382 - 79,975,217 (-)NCBI
GRCm381080,130,549 - 80,139,383 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030244789   ⟹   XP_030100649
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391079,966,382 - 79,973,692 (-)NCBI
GRCm381080,130,549 - 80,137,857 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030244790   ⟹   XP_030100650
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391079,966,382 - 79,973,935 (-)NCBI
GRCm381080,130,549 - 80,138,101 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030244791   ⟹   XP_030100651
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391079,966,382 - 79,975,199 (-)NCBI
GRCm381080,130,549 - 80,139,365 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001182197 (Get FASTA)   NCBI Sequence Viewer  
  XP_006513028 (Get FASTA)   NCBI Sequence Viewer  
  XP_006513030 (Get FASTA)   NCBI Sequence Viewer  
  XP_006513031 (Get FASTA)   NCBI Sequence Viewer  
  XP_006513032 (Get FASTA)   NCBI Sequence Viewer  
  XP_006513033 (Get FASTA)   NCBI Sequence Viewer  
  XP_006513034 (Get FASTA)   NCBI Sequence Viewer  
  XP_006513035 (Get FASTA)   NCBI Sequence Viewer  
  XP_006513036 (Get FASTA)   NCBI Sequence Viewer  
  XP_006513037 (Get FASTA)   NCBI Sequence Viewer  
  XP_006513039 (Get FASTA)   NCBI Sequence Viewer  
  XP_006513040 (Get FASTA)   NCBI Sequence Viewer  
  XP_030100649 (Get FASTA)   NCBI Sequence Viewer  
  XP_030100650 (Get FASTA)   NCBI Sequence Viewer  
  XP_030100651 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAD55370 (Get FASTA)   NCBI Sequence Viewer  
  AAH78442 (Get FASTA)   NCBI Sequence Viewer  
  AAI00553 (Get FASTA)   NCBI Sequence Viewer  
  BAC29200 (Get FASTA)   NCBI Sequence Viewer  
  EDL31593 (Get FASTA)   NCBI Sequence Viewer  
  EDL31594 (Get FASTA)   NCBI Sequence Viewer  
  EDL31595 (Get FASTA)   NCBI Sequence Viewer  
  EDL31596 (Get FASTA)   NCBI Sequence Viewer  
  EDL31597 (Get FASTA)   NCBI Sequence Viewer  
  EDL31598 (Get FASTA)   NCBI Sequence Viewer  
  EDL31599 (Get FASTA)   NCBI Sequence Viewer  
  Q66L44 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_001182197   ⟸   NM_001195268
- UniProtKB: Q66L44 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006513032   ⟸   XM_006512969
- Peptide Label: isoform X1
- UniProtKB: Q66L44 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006513028   ⟸   XM_006512965
- Peptide Label: isoform X1
- UniProtKB: Q66L44 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006513037   ⟸   XM_006512974
- Peptide Label: isoform X6
- UniProtKB: Q66L44 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006513033   ⟸   XM_006512970
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_006513040   ⟸   XM_006512977
- Peptide Label: isoform X6
- UniProtKB: Q66L44 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006513030   ⟸   XM_006512967
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_006513035   ⟸   XM_006512972
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_006513031   ⟸   XM_006512968
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_006513039   ⟸   XM_006512976
- Peptide Label: isoform X6
- UniProtKB: Q66L44 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006513034   ⟸   XM_006512971
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_006513036   ⟸   XM_006512973
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_030100651   ⟸   XM_030244791
- Peptide Label: isoform X6
RefSeq Acc Id: XP_030100650   ⟸   XM_030244790
- Peptide Label: isoform X6
RefSeq Acc Id: XP_030100649   ⟸   XM_030244789
- Peptide Label: isoform X6
RefSeq Acc Id: ENSMUSP00000131487   ⟸   ENSMUST00000170219
RefSeq Acc Id: ENSMUSP00000101008   ⟸   ENSMUST00000105369
RefSeq Acc Id: ENSMUSP00000130389   ⟸   ENSMUST00000147778
RefSeq Acc Id: ENSMUSP00000128980   ⟸   ENSMUST00000132523
RefSeq Acc Id: ENSMUSP00000132978   ⟸   ENSMUST00000169546
RefSeq Acc Id: ENSMUSP00000125962   ⟸   ENSMUST00000123967
RefSeq Acc Id: ENSMUSP00000115009   ⟸   ENSMUST00000142853

Promoters
RGD ID:6819193
Promoter ID:MM_KWN:4829
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   BoneMarrow_4Hour,   Brain,   Kidney,   MEF_B4
Transcripts:OTTMUST00000045746
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361079,596,931 - 79,598,092 (-)MPROMDB
RGD ID:6819194
Promoter ID:MM_KWN:4830
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain,   Kidney
Transcripts:OTTMUST00000045745,   UC007GBW.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361079,598,141 - 79,598,762 (-)MPROMDB
RGD ID:6819192
Promoter ID:MM_KWN:4831
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Liver,   Lung
Transcripts:ENSMUST00000105369,   NM_015761,   OTTMUST00000045737,   OTTMUST00000045738,   OTTMUST00000045739,   OTTMUST00000045740,   OTTMUST00000045741,   OTTMUST00000045742,   OTTMUST00000045743,   OTTMUST00000045744
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361079,600,061 - 79,602,102 (-)MPROMDB
RGD ID:6819195
Promoter ID:MM_KWN:4833
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day4,   MEF_B6
Transcripts:OTTMUST00000045848
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361079,603,794 - 79,604,294 (-)MPROMDB
RGD ID:8672612
Promoter ID:EPDNEW_M14337
Type:initiation region
Name:Cbarp_2
Description:Mus musculus calcium channel, voltage-dependent, beta subunitassociated regulatory protein , transcript variant 2, non-codingRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M14338  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381080,139,166 - 80,139,226EPDNEW
RGD ID:8672614
Promoter ID:EPDNEW_M14338
Type:multiple initiation site
Name:Cbarp_1
Description:Mus musculus calcium channel, voltage-dependent, beta subunitassociated regulatory protein , transcript variant 2, non-codingRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M14337  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381080,139,353 - 80,139,413EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1354170 AgrOrtholog
Ensembl Genes ENSMUSG00000035640 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000101008 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000115009 UniProtKB/TrEMBL
  ENSMUSP00000125962 UniProtKB/TrEMBL
  ENSMUSP00000128980 UniProtKB/TrEMBL
  ENSMUSP00000130389 UniProtKB/TrEMBL
  ENSMUSP00000131487 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000132978 UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000105369 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000123967 UniProtKB/TrEMBL
  ENSMUST00000132523 UniProtKB/TrEMBL
  ENSMUST00000142853 UniProtKB/TrEMBL
  ENSMUST00000147778 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUST00000169546 UniProtKB/TrEMBL
  ENSMUST00000170219 ENTREZGENE, UniProtKB/Swiss-Prot
InterPro CBARP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:100503659 UniProtKB/Swiss-Prot
MGD MGI:1354170 ENTREZGENE
NCBI Gene 100503659 ENTREZGENE
PANTHER PTHR28597 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Cbarp PhenoGen
UniProt CBARP_MOUSE UniProtKB/Swiss-Prot
  D3YXP8_MOUSE UniProtKB/TrEMBL
  E9PW07_MOUSE UniProtKB/TrEMBL
  E9Q5J1_MOUSE UniProtKB/TrEMBL
  E9Q6U0_MOUSE UniProtKB/TrEMBL
  Q66L44 ENTREZGENE
UniProt Secondary E9QP85 UniProtKB/Swiss-Prot
  Q497H6 UniProtKB/Swiss-Prot
  Q8CBL1 UniProtKB/Swiss-Prot
  Q9QZY3 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-08-04 Cbarp  calcium channel, voltage-dependent, beta subunit associated regulatory protein  Dos  downstream of Stk11  Symbol and/or name change 5135510 APPROVED