Zfp42 (zinc finger protein 42) - Rat Genome Database

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Gene: Zfp42 (zinc finger protein 42) Mus musculus
Analyze
Symbol: Zfp42
Name: zinc finger protein 42
RGD ID: 1316150
MGI Page MGI
Description: Enables DNA-binding transcription activator activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Involved in positive regulation of transcription by RNA polymerase II. Acts upstream of or within cellular response to leukemia inhibitory factor; germ cell development; and in utero embryonic development. Located in cytoplasm and nucleus. Part of protein-containing complex. Is expressed in several structures, including central nervous system; early conceptus; gonad; tail; and ureter. Orthologous to human ZFP42 (ZFP42 zinc finger protein).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: MGC107378; mREX-1; reduced expression protein 1; Rex; Rex-; Rex-1; Rex1; Zfp-4; Zfp-42
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Related Pseudogenes: Zfp42-ps1  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39843,748,100 - 43,760,041 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl843,748,100 - 43,760,017 (-)EnsemblGRCm39 Ensembl
GRCm38843,295,067 - 43,307,009 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl843,295,063 - 43,306,980 (-)EnsemblGRCm38mm10GRCm38
MGSCv37844,380,421 - 44,392,363 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36844,793,888 - 44,805,777 (-)NCBIMGSCv36mm8
Celera845,980,115 - 45,992,188 (-)NCBICelera
Cytogenetic Map8A4NCBI
cM Map823.89NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Mouse brain organization revealed through direct genome-scale TF expression analysis. Gray PA, etal., Science 2004 Dec 24;306(5705):2255-7.
2. MGDs mouse GO annotations MGD data from the GO Consortium
3. Mouse MP Annotation Import Pipeline RGD automated import pipeline
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:1821852   PMID:2511439   PMID:7945330   PMID:8474450   PMID:8672127   PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11217851   PMID:11839785   PMID:11969257  
PMID:12354678   PMID:12466851   PMID:12477932   PMID:12520002   PMID:12904583   PMID:14610273   PMID:14723852   PMID:15741177   PMID:16141072   PMID:16141073   PMID:16783635   PMID:16793732  
PMID:17093407   PMID:17166701   PMID:17478514   PMID:17518637   PMID:17967808   PMID:18073198   PMID:18083014   PMID:18237746   PMID:18287559   PMID:18433507   PMID:18493325   PMID:18799693  
PMID:19618472   PMID:20059953   PMID:20211142   PMID:20439489   PMID:21056461   PMID:21057502   PMID:21085182   PMID:21115610   PMID:21233130   PMID:21267068   PMID:21530438   PMID:21641340  
PMID:21731673   PMID:21873635   PMID:22327294   PMID:22596162   PMID:22844087   PMID:22897771   PMID:22988430   PMID:23825703   PMID:23892456   PMID:23934214   PMID:23939908   PMID:24859004  
PMID:26586221   PMID:26997646   PMID:27026076   PMID:27626380   PMID:28700664   PMID:30420655   PMID:30838422   PMID:35171666   PMID:35545632   PMID:35729116   PMID:36179666   PMID:36197846  
PMID:37524711   PMID:38113263  


Genomics

Comparative Map Data
Zfp42
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39843,748,100 - 43,760,041 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl843,748,100 - 43,760,017 (-)EnsemblGRCm39 Ensembl
GRCm38843,295,067 - 43,307,009 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl843,295,063 - 43,306,980 (-)EnsemblGRCm38mm10GRCm38
MGSCv37844,380,421 - 44,392,363 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36844,793,888 - 44,805,777 (-)NCBIMGSCv36mm8
Celera845,980,115 - 45,992,188 (-)NCBICelera
Cytogenetic Map8A4NCBI
cM Map823.89NCBI
ZFP42
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh384187,995,771 - 188,005,246 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl4187,995,771 - 188,005,046 (+)EnsemblGRCh38hg38GRCh38
GRCh374188,916,925 - 188,926,200 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 364189,153,919 - 189,163,193 (+)NCBINCBI36Build 36hg18NCBI36
Celera4186,226,500 - 186,235,743 (+)NCBICelera
Cytogenetic Map4q35.2NCBI
HuRef4184,653,751 - 184,663,028 (+)NCBIHuRef
CHM1_14188,893,484 - 188,902,761 (+)NCBICHM1_1
T2T-CHM13v2.04191,341,992 - 191,352,990 (+)NCBIT2T-CHM13v2.0
Zfp42
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81655,568,903 - 55,577,883 (+)NCBIGRCr8
mRatBN7.21648,836,463 - 48,845,443 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1648,836,648 - 48,845,401 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1654,232,714 - 54,241,617 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01657,606,749 - 57,615,729 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01652,870,722 - 52,879,624 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01652,016,590 - 52,026,346 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01651,743,302 - 51,753,068 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41652,150,048 - 52,158,306 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11652,150,122 - 52,158,381 (+)NCBI
Celera1646,809,653 - 46,819,299 (+)NCBICelera
Cytogenetic Map16q12.1NCBI
Zfp42
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540321,222,138 - 21,227,341 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540321,222,129 - 21,227,341 (-)NCBIChiLan1.0ChiLan1.0
ZFP42
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v23185,718,834 - 185,735,904 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan14186,073,425 - 186,090,495 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v04180,152,673 - 180,162,899 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.14192,342,123 - 192,350,455 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl4192,349,144 - 192,350,076 (+)Ensemblpanpan1.1panPan2
ZFP42
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11643,091,607 - 43,092,521 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1643,091,607 - 43,092,371 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1643,582,074 - 43,582,988 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01645,313,708 - 45,314,622 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1645,313,708 - 45,314,472 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11643,273,694 - 43,274,608 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01643,880,184 - 43,881,098 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01643,983,748 - 43,984,662 (-)NCBIUU_Cfam_GSD_1.0
Zfp42
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494336,322,857 - 36,323,627 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049365541,786,355 - 1,787,125 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZFP42
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl177,402,071 - 7,403,247 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1177,401,729 - 7,409,027 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2178,282,671 - 8,290,195 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ZFP42
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.17133,858,632 - 133,866,138 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl7133,864,858 - 133,865,790 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037114,278,733 - 114,286,347 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Zfp42
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476918,934,076 - 18,935,002 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476918,933,990 - 18,935,008 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Zfp42
391 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:85
Count of miRNA genes:83
Interacting mature miRNAs:83
Transcripts:ENSMUST00000082120
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1558870Eae36_mexperimental allergic encephalomyelitis susceptibility 36 (mouse)Not determined81477316071498244Mouse
1301088Alcw6_malcohol withdrawal 6 (mouse)Not determined81550657249506729Mouse
1300912Daq19_mdirectional asymmetry QTL 19 (mouse)Not determined81550657249506729Mouse
1301298Pgia4_mproteoglycan induced arthritis 4 (mouse)Not determined81656937350569697Mouse
1301550Fembrs2_mfemur breaking strength 2 (mouse)Not determined81832109752321225Mouse
1301160Eae14_msusceptibility to experimental allergic encephalomyelitis 14 (mouse)Not determined81945501853455150Mouse
1300603Cd8ts2_mCD8 T cell subset 2 (mouse)Not determined81945501853455150Mouse
10043974Obq30_mobesity QTL 30 (mouse)Not determined82658332260583322Mouse
13524525Bodwtq7_mbody wweight QTL 7 (mouse)82824955647027681Mouse
1357811Orq3_movulation rate QTL 3 (mouse)Not determined83250657271740637Mouse
4140966Egq12_mearly growth QTL 12 (mouse)Not determined3250657271740637Mouse
4141437W10q14_mweight 10 weeks QTL 14 (mouse)Not determined3250657271740637Mouse
4141172W6q9_mweight 6 weeks QTL 9 (mouse)Not determined3250657271740637Mouse
4140967Bmd39_mbone mineral density 39 (mouse)Not determined832506572117965439Mouse
10043990Hbnr12_mHeligmosomoides bakeri nematode resistance 12 (mouse)Not determined83327701651290537Mouse
1301936Trigq2_mtriglyceride QTL 2 (mouse)Not determined83429039768290537Mouse
1301196Mnif1_mmacronutrient intake (mouse)Not determined83510993045305872Mouse
1558875Eae31_mexperimental allergic encephalomyelitis susceptibility 31 (mouse)Not determined835109930115563747Mouse
11041902Lmr10a_mleishmaniasis resistance 10a (mouse)83532109757797633Mouse
11049578Lmr10c_mleishmaniasis resistance 10c (mouse)83532109757797633Mouse
11049577Lmr10b_mleishmaniasis resistance 10b (mouse)83532109757797633Mouse
1301139Lmr10_mleishmaniasis resistance 10 (mouse)Not determined83532109757797633Mouse
1301013Capsq4_mcapsaicin sensitivity related QTL 4 (mouse)Not determined83663015493455280Mouse
27226754Femd6_mfemur midshaft diameter 6, 10 week (mouse)837867154110326632Mouse
12904744Carcdq1_mcardiac collagen deposition QTL 1 (mouse)84016229795416226Mouse

Markers in Region
PMC102268P2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38843,296,190 - 43,296,318UniSTSGRCm38
MGSCv37844,381,544 - 44,381,672UniSTSGRCm37
Celera845,981,226 - 45,981,354UniSTS
Cytogenetic Map8A4UniSTS
cM Map824.0UniSTS
Zfp42  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381593,678,895 - 93,679,480UniSTSGRCm38
GRCm38843,295,351 - 43,296,293UniSTSGRCm38
MGSCv37844,380,705 - 44,381,647UniSTSGRCm37
MGSCv371593,509,326 - 93,509,911UniSTSGRCm37
Celera1595,831,830 - 95,832,415UniSTS
Celera845,980,399 - 45,981,329UniSTS
Cytogenetic Map8A4UniSTS
Cytogenetic Map15E3UniSTS
cM Map824.0UniSTS
PMC299854P1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38843,295,804 - 43,296,307UniSTSGRCm38
GRCm381593,679,368 - 93,679,494UniSTSGRCm38
MGSCv371593,509,799 - 93,509,925UniSTSGRCm37
MGSCv37844,381,158 - 44,381,661UniSTSGRCm37
Celera845,980,840 - 45,981,343UniSTS
Celera1595,832,303 - 95,832,429UniSTS
Cytogenetic Map15E3UniSTS
Cytogenetic Map8A4UniSTS
cM Map824.0UniSTS
Zfp42  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map8A4UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001424813 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001424814 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001424815 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_009556 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006509316 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011242186 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB221555 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC127575 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC134432 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AH000847 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK141232 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC053399 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC064785 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC098467 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466554 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  M28382 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000082120   ⟹   ENSMUSP00000080765
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl843,748,104 - 43,760,017 (-)Ensembl
GRCm38.p6 Ensembl843,295,067 - 43,306,980 (-)Ensembl
RefSeq Acc Id: ENSMUST00000209356   ⟹   ENSMUSP00000147607
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl843,748,100 - 43,759,987 (-)Ensembl
GRCm38.p6 Ensembl843,295,063 - 43,306,950 (-)Ensembl
RefSeq Acc Id: ENSMUST00000211248   ⟹   ENSMUSP00000147606
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl843,748,100 - 43,759,973 (-)Ensembl
GRCm38.p6 Ensembl843,295,063 - 43,306,936 (-)Ensembl
RefSeq Acc Id: NM_001424813   ⟹   NP_001411742
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39843,748,100 - 43,760,041 (-)NCBI
RefSeq Acc Id: NM_001424814   ⟹   NP_001411743
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39843,748,100 - 43,760,041 (-)NCBI
RefSeq Acc Id: NM_001424815   ⟹   NP_001411744
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39843,748,100 - 43,760,041 (-)NCBI
RefSeq Acc Id: NM_009556   ⟹   NP_033582
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39843,748,100 - 43,760,041 (-)NCBI
GRCm38843,295,067 - 43,307,009 (-)NCBI
MGSCv37844,380,421 - 44,392,363 (-)RGD
Celera845,980,115 - 45,992,188 (-)RGD
cM Map8 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006509316   ⟹   XP_006509379
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39843,748,104 - 43,759,187 (-)NCBI
GRCm38843,295,067 - 43,306,151 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011242186   ⟹   XP_011240488
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39843,748,104 - 43,753,654 (-)NCBI
GRCm38843,295,067 - 43,300,617 (-)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_033582   ⟸   NM_009556
- UniProtKB: Q7TPU3 (UniProtKB/Swiss-Prot),   Q4KMN3 (UniProtKB/Swiss-Prot),   P22227 (UniProtKB/Swiss-Prot),   E9QK22 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006509379   ⟸   XM_006509316
- Peptide Label: isoform X1
- UniProtKB: Q7TPU3 (UniProtKB/Swiss-Prot),   Q4KMN3 (UniProtKB/Swiss-Prot),   P22227 (UniProtKB/Swiss-Prot),   E9QK22 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011240488   ⟸   XM_011242186
- Peptide Label: isoform X1
- UniProtKB: Q7TPU3 (UniProtKB/Swiss-Prot),   Q4KMN3 (UniProtKB/Swiss-Prot),   P22227 (UniProtKB/Swiss-Prot),   E9QK22 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000147606   ⟸   ENSMUST00000211248
RefSeq Acc Id: ENSMUSP00000147607   ⟸   ENSMUST00000209356
RefSeq Acc Id: ENSMUSP00000080765   ⟸   ENSMUST00000082120
RefSeq Acc Id: NP_001411742   ⟸   NM_001424813
- UniProtKB: Q7TPU3 (UniProtKB/Swiss-Prot),   Q4KMN3 (UniProtKB/Swiss-Prot),   P22227 (UniProtKB/Swiss-Prot),   E9QK22 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001411744   ⟸   NM_001424815
- UniProtKB: Q7TPU3 (UniProtKB/Swiss-Prot),   Q4KMN3 (UniProtKB/Swiss-Prot),   P22227 (UniProtKB/Swiss-Prot),   E9QK22 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001411743   ⟸   NM_001424814
- UniProtKB: Q7TPU3 (UniProtKB/Swiss-Prot),   Q4KMN3 (UniProtKB/Swiss-Prot),   P22227 (UniProtKB/Swiss-Prot),   E9QK22 (UniProtKB/TrEMBL)
Protein Domains
C2H2-type

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P22227-F1-model_v2 AlphaFold P22227 1-288 view protein structure

Promoters
RGD ID:8666973
Promoter ID:EPDNEW_M11517
Type:initiation region
Name:Zfp42_1
Description:Mus musculus zinc finger protein 42 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38843,306,961 - 43,307,021EPDNEW
RGD ID:6843913
Promoter ID:MM_KWN:54272
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:ES_Cell
Transcripts:NM_009556,   UC009LOB.2,   UC009LOC.2
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36844,392,151 - 44,392,651 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:99187 AgrOrtholog
Ensembl Genes ENSMUSG00000051176 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000082120 ENTREZGENE
  ENSMUST00000082120.5 UniProtKB/TrEMBL
  ENSMUST00000209356.2 UniProtKB/TrEMBL
  ENSMUST00000211248.2 UniProtKB/TrEMBL
Gene3D-CATH Classic Zinc Finger UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Znf_C2H2_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_C2H2_type UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:22702 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:99187 ENTREZGENE
NCBI Gene 22702 ENTREZGENE
PANTHER TRANSCRIPTIONAL REPRESSOR PROTEIN YY UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZINC FINGER PROTEIN 42 HOMOLOG UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam zf-C2H2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Zfp42 PhenoGen
PROSITE ZINC_FINGER_C2H2_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART ZnF_C2H2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF57667 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt E9QK22 ENTREZGENE, UniProtKB/TrEMBL
  P22227 ENTREZGENE
  Q4KMN3 ENTREZGENE
  Q7TPU3 ENTREZGENE
  ZFP42_MOUSE UniProtKB/Swiss-Prot
UniProt Secondary Q4KMN3 UniProtKB/Swiss-Prot
  Q7TPU3 UniProtKB/Swiss-Prot