H2BC5 (H2B clustered histone 5) - Rat Genome Database
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Gene: H2BC5 (H2B clustered histone 5) Homo sapiens
Analyze
Symbol: H2BC5
Name: H2B clustered histone 5
RGD ID: 1316135
HGNC Page HGNC
Description: Exhibits identical protein binding activity. Involved in antimicrobial humoral immune response mediated by antimicrobial peptide and defense response to other organism. Localizes to cytosol; extracellular space; and nucleoplasm.
Type: protein-coding
RefSeq Status: REVIEWED
Also known as: dJ221C16.6; H2B histone family, member B; H2B.1B; H2B/a; H2B/b; H2B/g; H2B/h; H2B/k; H2B/l; H2BFA; H2BFB; H2BFG; H2BFH; H2BFK; H2BFL; HIRA-interacting protein 2; HIRIP2; HIST1H2BC; HIST1H2BD; HIST1H2BE; HIST1H2BF; HIST1H2BG; HIST1H2BI; histone 1, H2bd; histone cluster 1 H2B family member d; histone cluster 1, H2bd; Histone H2B type 1-C/E/F/G/I; histone H2B type 1-D; Histone H2B.1 A; histone H2B.1 B; Histone H2B.a; histone H2B.b; Histone H2B.g; Histone H2B.h; Histone H2B.k; Histone H2B.l; MGC90432
RGD Orthologs
Mouse
Rat
Pig
Alliance Genes
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl626,158,146 - 26,171,349 (+)EnsemblGRCh38hg38GRCh38
GRCh38626,158,008 - 26,171,349 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh37626,157,419 - 26,171,577 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36626,266,328 - 26,279,556 (+)NCBINCBI36hg18NCBI36
Build 34626,266,327 - 26,279,553NCBI
Celera627,387,650 - 27,400,878 (+)NCBI
Cytogenetic Map6p22.2NCBI
HuRef626,101,321 - 26,114,581 (+)NCBIHuRef
CHM1_1626,160,553 - 26,173,776 (+)NCBICHM1_1
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-demecolcine  (EXP)
1,1,1-Trichloro-2-(o-chlorophenyl)-2-(p-chlorophenyl)ethane  (EXP)
1,2-dimethylhydrazine  (ISO)
17beta-estradiol  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2-hydroxypropanoic acid  (EXP)
2-methylcholine  (EXP)
3-isobutyl-1-methyl-7H-xanthine  (EXP)
4-\{[(5,5,8,8-tetramethyl-5,6,7,8-tetrahydronaphthalen-2-yl)carbonyl]amino\}benzoic acid  (EXP)
4-hydroxyphenyl retinamide  (ISO)
5-aza-2'-deoxycytidine  (EXP)
6-propyl-2-thiouracil  (ISO)
acetamide  (ISO)
aflatoxin B1  (EXP)
all-trans-retinoic acid  (EXP)
Aroclor 1254  (ISO)
arsenous acid  (EXP)
azathioprine  (EXP)
belinostat  (EXP)
benzene  (ISO)
benzo[a]pyrene  (EXP,ISO)
benzo[a]pyrene diol epoxide I  (EXP)
benzo[b]fluoranthene  (ISO)
berberine  (EXP)
bis(2-chloroethyl) sulfide  (EXP)
bisphenol A  (EXP,ISO)
calcitriol  (EXP)
carbon nanotube  (ISO)
chrysene  (ISO)
cisplatin  (EXP)
copper atom  (EXP)
copper(0)  (EXP)
copper(II) sulfate  (EXP)
coumestrol  (EXP)
crocidolite asbestos  (EXP)
curcumin  (EXP)
cyclosporin A  (EXP)
decabromodiphenyl ether  (EXP)
deoxynivalenol  (EXP)
dexamethasone  (EXP)
diarsenic trioxide  (EXP)
dibenz[a,h]anthracene  (ISO)
dichloroacetic acid  (ISO)
dorsomorphin  (EXP)
doxorubicin  (EXP)
Enterolactone  (EXP)
entinostat  (EXP)
ferric oxide  (ISO)
folic acid  (ISO)
formaldehyde  (EXP)
genistein  (EXP)
hydrogen peroxide  (EXP)
indometacin  (EXP)
isotretinoin  (EXP)
L-ascorbic acid  (EXP)
mercury dibromide  (EXP)
methyl methacrylate  (ISO)
methyl methanesulfonate  (EXP)
methylisothiazolinone  (EXP)
methylparaben  (EXP)
N,N,N',N'-tetrakis(2-pyridylmethyl)ethylenediamine  (EXP)
p-chloromercuribenzoic acid  (EXP)
paracetamol  (EXP)
pirinixic acid  (ISO)
progesterone  (EXP)
propionic acid  (EXP)
quercetin  (EXP)
rac-lactic acid  (EXP)
resveratrol  (EXP)
SB 431542  (EXP)
silicon dioxide  (EXP)
sodium arsenite  (EXP)
sunitinib  (EXP)
T-2 toxin  (EXP)
tert-butyl hydroperoxide  (EXP)
testosterone  (EXP)
tetraphene  (ISO)
trichostatin A  (EXP)
troglitazone  (EXP)
urethane  (EXP)
valproic acid  (EXP)
vincristine  (EXP)
zearalenone  (EXP)
zoledronic acid  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytosol  (IDA)
extracellular exosome  (HDA)
extracellular space  (IDA)
nucleoplasm  (IDA,TAS)
nucleosome  (IEA,NAS)
nucleus  (HDA,IDA)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

Additional References at PubMed
PMID:1916825   PMID:9119399   PMID:9439656   PMID:9566873   PMID:9710638   PMID:11080476   PMID:11689053   PMID:12408966   PMID:12477932   PMID:12757711   PMID:14574404   PMID:14657027  
PMID:15489334   PMID:15635413   PMID:16283522   PMID:16307923   PMID:16319397   PMID:16457587   PMID:16627869   PMID:16713563   PMID:16916647   PMID:20348541   PMID:20458337   PMID:20618440  
PMID:21081503   PMID:21630459   PMID:21873635   PMID:21907836   PMID:22174317   PMID:22623428   PMID:23254330   PMID:23463506   PMID:24457600   PMID:25662211   PMID:25963833   PMID:26318153  
PMID:26485645   PMID:27248496   PMID:27880917   PMID:27976729   PMID:28031328   PMID:28514442   PMID:29128334   PMID:29298432   PMID:29507755   PMID:29509190   PMID:29845934   PMID:30021884  
PMID:30258100   PMID:30349055   PMID:30442662   PMID:30745168   PMID:30804502   PMID:30948266   PMID:30981630   PMID:31152661   PMID:31180492   PMID:31300519   PMID:31586073   PMID:31980649  
PMID:32877691   PMID:33001583  


Genomics

Comparative Map Data
H2BC5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl626,158,146 - 26,171,349 (+)EnsemblGRCh38hg38GRCh38
GRCh38626,158,008 - 26,171,349 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh37626,157,419 - 26,171,577 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36626,266,328 - 26,279,556 (+)NCBINCBI36hg18NCBI36
Build 34626,266,327 - 26,279,553NCBI
Celera627,387,650 - 27,400,878 (+)NCBI
Cytogenetic Map6p22.2NCBI
HuRef626,101,321 - 26,114,581 (+)NCBIHuRef
CHM1_1626,160,553 - 26,173,776 (+)NCBICHM1_1
H2bc14
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391321,906,214 - 21,906,696 (+)NCBIGRCm39mm39
GRCm381321,722,044 - 21,722,526 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1321,722,044 - 21,722,567 (+)EnsemblGRCm38mm10GRCm38
MGSCv371321,813,967 - 21,814,347 (+)NCBIGRCm37mm9NCBIm37
MGSCv361321,729,563 - 21,729,943 (+)NCBImm8
Celera1321,997,566 - 21,997,946 (+)NCBICelera
Cytogenetic Map13A3.1NCBI
Hist1h2bd
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.01744,833,924 - 44,834,305 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1744,833,924 - 44,834,305 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01758,632,225 - 58,632,606 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41750,429,266 - 50,429,647 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11750,413,666 - 50,432,849 (-)NCBI
Celera1753,668,343 - 53,668,724 (+)NCBICelera
Cytogenetic Map17p11NCBI
HIST1H2BD
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl720,821,091 - 20,829,493 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1720,821,090 - 20,829,491 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2722,044,569 - 22,053,568 (-)NCBISscrofa10.2Sscrofa10.2susScr3

Position Markers
RH80280  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37626,158,782 - 26,158,901UniSTSGRCh37
Build 36626,266,761 - 26,266,880RGDNCBI36
Celera627,388,083 - 27,388,202RGD
Cytogenetic Map6p21.3UniSTS
HuRef626,101,754 - 26,101,873UniSTS
GeneMap99-GB4 RH Map6105.5UniSTS
D12S1124  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37626,157,572 - 26,157,755UniSTSGRCh37
Build 36626,265,551 - 26,265,734RGDNCBI36
Celera627,386,874 - 27,387,057RGD
Cytogenetic Map6p21.3UniSTS
HuRef626,100,545 - 26,100,728UniSTS
STS-N33927  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37626,171,396 - 26,171,531UniSTSGRCh37
Build 36626,279,375 - 26,279,510RGDNCBI36
Celera627,400,697 - 27,400,832RGD
Cytogenetic Map6p21.3UniSTS
HuRef626,114,400 - 26,114,535UniSTS
GeneMap99-GB4 RH Map6105.76UniSTS
NCBI RH Map6326.7UniSTS
RH47386  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37626,171,353 - 26,171,501UniSTSGRCh37
Build 36626,279,332 - 26,279,480RGDNCBI36
Celera627,400,654 - 27,400,802RGD
Cytogenetic Map6p21.3UniSTS
HuRef626,114,357 - 26,114,505UniSTS
GeneMap99-GB4 RH Map6105.5UniSTS
RH69154  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37626,157,290 - 26,157,418UniSTSGRCh37
Build 36626,265,269 - 26,265,397RGDNCBI36
Celera627,386,592 - 27,386,720RGD
Cytogenetic Map6p21.3UniSTS
HuRef626,100,263 - 26,100,391UniSTS
GeneMap99-GB4 RH Map6105.28UniSTS
NCBI RH Map6335.4UniSTS
D6S2372  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37626,166,168 - 26,166,341UniSTSGRCh37
GRCh375154,195,339 - 154,195,508UniSTSGRCh37
Build 365154,175,532 - 154,175,701RGDNCBI36
Celera627,395,469 - 27,395,642UniSTS
Celera5150,272,825 - 150,272,994RGD
Cytogenetic Map6p22UniSTS
Cytogenetic Map5q33.2UniSTS
Cytogenetic Map6p21.3UniSTS
HuRef626,109,141 - 26,109,314UniSTS
HuRef5149,337,636 - 149,337,805UniSTS
UniSTS:482908  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37626,199,787 - 26,200,216UniSTSGRCh37
Build 36626,307,766 - 26,308,195RGDNCBI36
Celera627,429,090 - 27,429,519RGD
HuRef626,142,791 - 26,143,220UniSTS

miRNA Target Status

Confirmed Target Of
miRNA GeneMature miRNAMethod NameResult TypeData TypeSupport TypePMID
MIR3140hsa-miR-3140-3pMirtarbaseexternal_infoCLASHFunctional MTI (Weak)23622248

Predicted Target Of
Summary Value
Count of predictions:260
Count of miRNA genes:236
Interacting mature miRNAs:238
Transcripts:ENST00000289316, ENST00000377777
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system visual system adipose tissue appendage entire extraembryonic component pharyngeal arch
High 2 3 2
Medium 1202 2287 1582 608 2350 464 2262 966 1425 355 1493 1555 160 1 363 1418 6 2
Low 3726 4866 2216 491 1968 259 6878 3233 6467 207 2075 2212 231 2329 4556
Below cutoff 2658 2769 1345 437 799 245 4516 2427 3679 121 791 1024 192 1411 3040

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000289316   ⟹   ENSP00000289316
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl626,158,146 - 26,171,349 (+)Ensembl
RefSeq Acc Id: ENST00000377777   ⟹   ENSP00000367008
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl626,158,146 - 26,158,641 (+)Ensembl
RefSeq Acc Id: NM_021063   ⟹   NP_066407
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38626,158,122 - 26,158,607 (+)NCBI
GRCh37626,157,419 - 26,171,577 (+)NCBI
Build 36626,266,328 - 26,266,850 (+)NCBI Archive
Celera627,387,650 - 27,400,878 (+)RGD
HuRef626,101,321 - 26,114,581 (+)RGD
CHM1_1626,160,553 - 26,161,039 (+)NCBI
Sequence:
RefSeq Acc Id: NM_138720   ⟹   NP_619790
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38626,158,121 - 26,171,349 (+)NCBI
GRCh37626,157,419 - 26,171,577 (+)NCBI
Build 36626,266,328 - 26,279,556 (+)NCBI Archive
Celera627,387,650 - 27,400,878 (+)RGD
HuRef626,101,321 - 26,114,581 (+)RGD
CHM1_1626,160,553 - 26,173,776 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005249039   ⟹   XP_005249096
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38626,158,008 - 26,159,202 (+)NCBI
GRCh37626,157,419 - 26,171,577 (+)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: NP_619790   ⟸   NM_138720
- UniProtKB: P58876 (UniProtKB/Swiss-Prot),   A0A024QZZ7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_066407   ⟸   NM_021063
- UniProtKB: P62807 (UniProtKB/Swiss-Prot),   P58876 (UniProtKB/Swiss-Prot),   A0A024QZZ7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005249096   ⟸   XM_005249039
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: ENSP00000367008   ⟸   ENST00000377777
RefSeq Acc Id: ENSP00000289316   ⟸   ENST00000289316
Protein Domains
Histone

Promoters
RGD ID:6872252
Promoter ID:EPDNEW_H9291
Type:initiation region
Name:HIST1H2BD_2
Description:histone cluster 1 H2B family member d
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H9287  
Experiment Methods:Single-end sequencing.; Paired-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh38626,158,125 - 26,158,185EPDNEW
RGD ID:6804305
Promoter ID:HG_KWN:52582
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   CD4+TCell_12Hour,   CD4+TCell_2Hour,   HeLa_S3,   Jurkat,   K562,   Lymphoblastoid,   NB4
Transcripts:OTTHUMT00000040088
Position:
Human AssemblyChrPosition (strand)Source
Build 36626,265,411 - 26,266,482 (+)MPROMDB

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 6p22.3-21.33(chr6:18120520-30767516)x1 copy number loss Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000052180]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000052180]|See cases [RCV000052180] Chr6:18120520..30767516 [GRCh38]
Chr6:18120751..30735293 [GRCh37]
Chr6:18228730..30843272 [NCBI36]
Chr6:6p22.3-21.33
pathogenic
GRCh38/hg38 6p25.2-21.33(chr6:3224310-30657190)x3 copy number gain See cases [RCV000138956] Chr6:3224310..30657190 [GRCh38]
Chr6:3224544..30624967 [GRCh37]
Chr6:3169543..30732946 [NCBI36]
Chr6:6p25.2-21.33
pathogenic
GRCh38/hg38 6p22.2(chr6:25991402-26280693)x3 copy number gain See cases [RCV000139521] Chr6:25991402..26280693 [GRCh38]
Chr6:25991630..26280921 [GRCh37]
Chr6:26099609..26388900 [NCBI36]
Chr6:6p22.2
likely benign
GRCh38/hg38 6p25.3-12.3(chr6:156974-46789291)x3 copy number gain See cases [RCV000143497] Chr6:156974..46789291 [GRCh38]
Chr6:156974..46757028 [GRCh37]
Chr6:101974..46864987 [NCBI36]
Chr6:6p25.3-12.3
pathogenic
GRCh37/hg19 6p22.2(chr6:26104332-26365573)x4 copy number gain Ductal breast carcinoma [RCV000207323] Chr6:26104332..26365573 [GRCh37]
Chr6:6p22.2
uncertain significance
GRCh37/hg19 6p22.2(chr6:25839165-26536884)x4 copy number gain See cases [RCV000447433] Chr6:25839165..26536884 [GRCh37]
Chr6:6p22.2
uncertain significance
GRCh37/hg19 6p25.3-q27(chr6:156975-170919482)x3 copy number gain See cases [RCV000512067] Chr6:156975..170919482 [GRCh37]
Chr6:6p25.3-q27
pathogenic
GRCh37/hg19 6p25.3-q27(chr6:156975-170919482) copy number gain See cases [RCV000510595] Chr6:156975..170919482 [GRCh37]
Chr6:6p25.3-q27
pathogenic
GRCh37/hg19 6p22.2(chr6:25851789-26319486)x3 copy number gain not provided [RCV000682656] Chr6:25851789..26319486 [GRCh37]
Chr6:6p22.2
uncertain significance
GRCh37/hg19 6p25.3-q27(chr6:108666-170980171)x3 copy number gain not provided [RCV000745403] Chr6:108666..170980171 [GRCh37]
Chr6:6p25.3-q27
pathogenic
GRCh37/hg19 6p25.3-q27(chr6:60107-171054786)x3 copy number gain not provided [RCV000745400] Chr6:60107..171054786 [GRCh37]
Chr6:6p25.3-q27
pathogenic
GRCh37/hg19 6p25.3-q27(chr6:165632-170919470)x3 copy number gain not provided [RCV000745404] Chr6:165632..170919470 [GRCh37]
Chr6:6p25.3-q27
pathogenic
GRCh37/hg19 6p22.2(chr6:26110314-26338056)x3 copy number gain not provided [RCV000745546] Chr6:26110314..26338056 [GRCh37]
Chr6:6p22.2
benign
GRCh37/hg19 6p22.2(chr6:26110961-26219744)x3 copy number gain not provided [RCV000745547] Chr6:26110961..26219744 [GRCh37]
Chr6:6p22.2
benign
GRCh37/hg19 6p22.2(chr6:26145158-26245236)x3 copy number gain not provided [RCV000745549] Chr6:26145158..26245236 [GRCh37]
Chr6:6p22.2
benign
GRCh37/hg19 6p22.2(chr6:25996066-26303969)x3 copy number gain not provided [RCV000847447] Chr6:25996066..26303969 [GRCh37]
Chr6:6p22.2
uncertain significance
GRCh37/hg19 6p22.2(chr6:25896585-26287389)x4 copy number gain not provided [RCV000845790] Chr6:25896585..26287389 [GRCh37]
Chr6:6p22.2
uncertain significance
GRCh37/hg19 6p22.2(chr6:26067079-26207758)x1 copy number loss not provided [RCV000849592] Chr6:26067079..26207758 [GRCh37]
Chr6:6p22.2
uncertain significance
GRCh37/hg19 6p22.2(chr6:26067580-26306202)x3 copy number gain not provided [RCV000849663] Chr6:26067580..26306202 [GRCh37]
Chr6:6p22.2
uncertain significance
GRCh37/hg19 6p22.2(chr6:26046566-26670193)x3 copy number gain not provided [RCV001258882] Chr6:26046566..26670193 [GRCh37]
Chr6:6p22.2
uncertain significance
GRCh37/hg19 6p22.2(chr6:26090243-26265667)x3 copy number gain not provided [RCV001258883] Chr6:26090243..26265667 [GRCh37]
Chr6:6p22.2
uncertain significance

Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:4747 AgrOrtholog
COSMIC H2BC5 COSMIC
Ensembl Genes ENSG00000158373 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
  ENSG00000180596 UniProtKB/Swiss-Prot
  ENSG00000273802 UniProtKB/Swiss-Prot
  ENSG00000274290 UniProtKB/Swiss-Prot
  ENSG00000277224 UniProtKB/Swiss-Prot
  ENSG00000278588 UniProtKB/Swiss-Prot
Ensembl Protein ENSP00000289316 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSP00000321744 UniProtKB/Swiss-Prot
  ENSP00000348924 UniProtKB/Swiss-Prot
  ENSP00000366962 UniProtKB/Swiss-Prot
  ENSP00000367008 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSP00000380180 UniProtKB/Swiss-Prot
  ENSP00000445633 UniProtKB/Swiss-Prot
  ENSP00000483237 UniProtKB/Swiss-Prot
  ENSP00000489317 UniProtKB/Swiss-Prot
Ensembl Transcript ENST00000289316 ENTREZGENE, UniProtKB/Swiss-Prot
  ENST00000314332 UniProtKB/Swiss-Prot
  ENST00000356530 UniProtKB/Swiss-Prot
  ENST00000377733 UniProtKB/Swiss-Prot
  ENST00000377777 ENTREZGENE, UniProtKB/Swiss-Prot
  ENST00000396984 UniProtKB/Swiss-Prot
  ENST00000541790 UniProtKB/Swiss-Prot
  ENST00000614097 UniProtKB/Swiss-Prot
  ENST00000634910 UniProtKB/Swiss-Prot
Gene3D-CATH 1.10.20.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
GTEx ENSG00000158373 GTEx
  ENSG00000180596 GTEx
  ENSG00000273802 GTEx
  ENSG00000274290 GTEx
  ENSG00000277224 GTEx
  ENSG00000278588 GTEx
HGNC ID HGNC:4747 ENTREZGENE
Human Proteome Map H2BC5 Human Proteome Map
InterPro Histone-fold UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Histone_H2A/H2B/H3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Histone_H2B UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report hsa:3017 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  hsa:8339 UniProtKB/Swiss-Prot
  hsa:8343 UniProtKB/Swiss-Prot
  hsa:8344 UniProtKB/Swiss-Prot
  hsa:8346 UniProtKB/Swiss-Prot
  hsa:8347 UniProtKB/Swiss-Prot
NCBI Gene 3017 ENTREZGENE
OMIM 602799 OMIM
PANTHER PTHR23428 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Histone UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PharmGKB PA29122 PharmGKB
PRINTS HISTONEH2B UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE HISTONE_H2B UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART H2B UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF47113 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniGene Hs.591797 ENTREZGENE
UniProt A0A024QZZ7 ENTREZGENE, UniProtKB/TrEMBL
  H2B1C_HUMAN UniProtKB/Swiss-Prot
  H2B1D_HUMAN UniProtKB/Swiss-Prot, ENTREZGENE
  P62807 ENTREZGENE
UniProt Secondary P02278 UniProtKB/Swiss-Prot
  Q3B872 UniProtKB/Swiss-Prot
  Q4VB69 UniProtKB/Swiss-Prot
  Q93078 UniProtKB/Swiss-Prot
  Q93080 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-07-30 H2BC5  H2B clustered histone 5  HIST1H2BD  histone cluster 1 H2B family member d  Symbol and/or name change 5135510 APPROVED
2016-08-23 HIST1H2BD  histone cluster 1 H2B family member d    histone cluster 1, H2bd  Symbol and/or name change 5135510 APPROVED
2011-09-01 HIST1H2BD  histone cluster 1, H2bd  HIST1H2BD  histone cluster 1, H2bd  Symbol and/or name change 5135510 APPROVED