Tmem169 (transmembrane protein 169)

Gene: Tmem169 (transmembrane protein 169) Mus musculus

Analyze

Symbol:

Tmem169

Name:

transmembrane protein 169

RGD ID:

1316079

MGI Page

MGI

Description:

Predicted to be located in membrane. Orthologous to human TMEM169 (transmembrane protein 169).

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

A830020B06Rik

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	TMEM169 (transmembrane protein 169)	HGNC	EggNOG, Ensembl, HGNC, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Rattus norvegicus (Norway rat):	Tmem169 (transmembrane protein 169)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Tmem169 (transmembrane protein 169)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	TMEM169 (transmembrane protein 169)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	TMEM169 (transmembrane protein 169)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Tmem169 (transmembrane protein 169)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	TMEM169 (transmembrane protein 169)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	TMEM169 (transmembrane protein 169)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Rattus norvegicus (Norway rat):	Tmem169 (transmembrane protein 169)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	TMEM169 (transmembrane protein 169)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	tmem169b (transmembrane protein 169b)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid\|ZFIN)
Danio rerio (zebrafish):	tmem169a (transmembrane protein 169a)	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid\|ZFIN)
Drosophila melanogaster (fruit fly):	CG4596	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	tmem169	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)

Latest Assembly:

GRCm39 - Mouse Genome Assembly GRCm39

Position:

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	1	72,323,554 - 72,342,263 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	1	72,323,528 - 72,342,263 (+)	Ensembl		GRCm39 Ensembl
GRCm38	1	72,284,351 - 72,303,104 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	1	72,284,369 - 72,303,104 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	1	72,330,947 - 72,349,569 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	1	72,217,581 - 72,236,203 (+)	NCBI		MGSCv36	mm8
Celera	1	72,852,729 - 72,871,243 (+)	NCBI		Celera
Cytogenetic Map	1	C3	NCBI
cM Map	1	36.48	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

genetic disease (ISO)

Neurodevelopmental Disorders (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1-naphthyl isothiocyanate (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP)

2-methylcholine (ISO)

6-propyl-2-thiouracil (ISO)

acetamide (ISO)

acrylamide (ISO)

aflatoxin B1 (ISO)

amitrole (ISO)

aristolochic acid A (ISO)

benzo[a]pyrene (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (ISO)

caffeine (ISO)

copper atom (ISO)

copper(0) (ISO)

Cuprizon (ISO)

dorsomorphin (ISO)

endosulfan (ISO)

entinostat (ISO)

ethanol (ISO)

folic acid (ISO)

furan (ISO)

gentamycin (ISO)

leflunomide (ISO)

lipopolysaccharide (ISO)

methimazole (ISO)

methylmercury chloride (ISO)

panobinostat (ISO)

paracetamol (ISO)

perfluorohexanesulfonic acid (EXP)

perfluorooctane-1-sulfonic acid (EXP)

phenylmercury acetate (ISO)

resorcinol (ISO)

S-(1,2-dichlorovinyl)-L-cysteine (ISO)

SB 431542 (ISO)

silicon dioxide (ISO)

sodium arsenite (EXP,ISO)

sulfadimethoxine (ISO)

temozolomide (ISO)

trichloroethene (ISO)

trichostatin A (ISO)

triptonide (EXP)

urethane (ISO)

valproic acid (EXP,ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

biological_process (ND)

Cellular Component

cellular_component (ND)

membrane (IEA)

Molecular Function

molecular_function (ND)

References

References - curated

#	Reference Title	Reference Citation
1.	MGDs mouse GO annotations	MGD data from the GO Consortium
2.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:10349636	PMID:11042159	PMID:11076861	PMID:11217851	PMID:12466851	PMID:12477932	PMID:15489334	PMID:16141072	PMID:16141073	PMID:21677750

Genomics

Comparative Map Data

Tmem169
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	1	72,323,554 - 72,342,263 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	1	72,323,528 - 72,342,263 (+)	Ensembl		GRCm39 Ensembl
GRCm38	1	72,284,351 - 72,303,104 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	1	72,284,369 - 72,303,104 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	1	72,330,947 - 72,349,569 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	1	72,217,581 - 72,236,203 (+)	NCBI		MGSCv36	mm8
Celera	1	72,852,729 - 72,871,243 (+)	NCBI		Celera
Cytogenetic Map	1	C3	NCBI
cM Map	1	36.48	NCBI

TMEM169
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	2	216,081,919 - 216,102,783 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	2	216,081,866 - 216,102,783 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	2	216,946,642 - 216,967,506 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	2	216,654,887 - 216,675,739 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	2	210,716,170 - 210,737,096 (+)	NCBI		Celera
Cytogenetic Map	2	q35	NCBI
HuRef	2	208,803,861 - 208,824,100 (+)	NCBI		HuRef
CHM1_1	2	216,952,568 - 216,973,483 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	2	216,567,275 - 216,588,187 (+)	NCBI		T2T-CHM13v2.0

Tmem169
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	9	81,375,854 - 81,399,970 (+)	NCBI		GRCr8
mRatBN7.2	9	73,926,553 - 73,950,679 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	9	73,926,568 - 73,950,576 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	9	82,390,679 - 82,414,722 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	9	87,519,551 - 87,543,590 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	9	85,907,110 - 85,931,190 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	9	79,630,592 - 79,654,686 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	9	79,630,604 - 79,654,688 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	9	79,403,626 - 79,427,523 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	9	71,443,776 - 71,467,777 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	9	71,324,191 - 71,348,242 (+)	NCBI		Celera
Cytogenetic Map	9	q33	NCBI

Tmem169
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955453	17,058,397 - 17,065,235 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955453	17,059,964 - 17,076,201 (-)	NCBI	ChiLan1.0	ChiLan1.0

TMEM169
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	13	118,711,350 - 118,732,280 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	2B	118,726,315 - 118,747,245 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	2B	103,343,989 - 103,364,924 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	2B	221,945,178 - 221,966,097 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	2B	221,945,227 - 221,966,097 (+)	Ensembl	panpan1.1		panPan2

TMEM169
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	37	23,067,430 - 23,087,835 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	37	23,067,972 - 23,086,088 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	37	23,893,263 - 23,915,151 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	37	23,090,600 - 23,112,882 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	37	23,090,608 - 23,112,882 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	37	22,978,073 - 22,999,868 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	37	22,929,993 - 22,952,017 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	37	22,947,488 - 22,969,610 (+)	NCBI		UU_Cfam_GSD_1.0

Tmem169
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405303	171,461,662 - 171,482,739 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936586	1,143,121 - 1,164,208 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936586	1,143,127 - 1,164,185 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

TMEM169
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	15	118,346,943 - 118,352,707 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	15	118,335,915 - 118,352,713 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	15	131,216,876 - 131,233,548 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

TMEM169
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	10	101,925,459 - 101,945,277 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	10	101,935,860 - 101,945,797 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666040	97,451,150 - 97,472,461 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Variants

Variants in Tmem169
597 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	662
Count of miRNA genes:	465
Interacting mature miRNAs:	538
Transcripts:	ENSMUST00000027380, ENSMUST00000141783
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCm39)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
13824984	Twq5_m	testis weight QTL 5 (mouse)					1	3069992	184732197	Mouse
11039528	Ccc3_m	colitis susceptibility in the Collaborative Cross 3 (mouse)					1	3680142	195051546	Mouse
1357475	w3q13_m	weight 3 weeks QTL 13 (mouse)			Not determined		1	23109591	73976915	Mouse
1357824	Estoq4_m	embryo survival total QTL 4 (mouse)			Not determined		1	34760138	73976915	Mouse
39128207	Lwq16_m	liver weight QTL 16 (mouse)					1	34760138	73976915	Mouse
1357759	W3q12_m	weight 3 weeks QTL 12 (mouse)			Not determined		1	34760138	73976915	Mouse
1357651	Lgq5_m	late growth QTL 5 (mouse)			Not determined		1	34760138	73976915	Mouse
1357506	W10q6_m	weight 10 weeks QTL 6 (mouse)			Not determined		1	34760138	73976915	Mouse
1357524	W6q14_m	weight 6 weeks QTL 14 (mouse)			Not determined		1	34760138	73976915	Mouse
1357753	Kidq2_m	kidney weight QTL 2 (mouse)			Not determined		1	34760138	150193871	Mouse
1357488	Splq3_m	spleen weight QTL 3 (mouse)			Not determined		1	34760138	150193871	Mouse
1558860	W10q7_m	weight 10 weeks QTL 7 (mouse)			Not determined		1	34760138	150193871	Mouse
1301954	Lrnx11_m	learning-contextual 11 (mouse)			Not determined		1	39132808	74516365	Mouse
1357721	Sle17_m	systematic lupus erythematosus susceptibility 17 (mouse)			Not determined		1	39132808	126445310	Mouse
1301166	Thypr2_m	thymocyte proliferative response 2 (mouse)			Not determined		1	41273124	75273271	Mouse
18182931	Metl1_m	metabolite locus 1, pyridoxate (mouse)					1	41275399	75275399	Mouse
4141032	Wbcc1_m	white blood cell count 1 (mouse)			Not determined			42259667	76259667	Mouse
1301714	Vertcling_m	vertical clinging (mouse)			Not determined		1	42938031	76938167	Mouse
1558855	Eae30_m	experimental allergic encephalomyelitis susceptibility 30 (mouse)			Not determined		1	45417773	72975057	Mouse
1301722	Cia9_m	collagen induced arthritis QTL 9 (mouse)			Not determined		1	45783900	189303617	Mouse
1301670	Ssta1_m	susceptibility to Salmonella typhimurium antigens 1 (mouse)			Not determined		1	45946755	79946882	Mouse
1301616	Yaa2_m	Y-linked autoimmune acceleration 2 (mouse)			Not determined		1	46854690	80854839	Mouse
1301225	Sle7_m	systematic lupus erythematosus susceptibility 7 (mouse)			Not determined		1	46854690	80854839	Mouse
1558905	Gct7_m	granulosa cell tumorigenesis 7 (mouse)			Not determined		1	47349894	81350013	Mouse
1558822	Vas1_m	autoimmune vasitis resistance 1 (mouse)			Not determined		1	48889006	82889210	Mouse
1301211	Bbaa11_m	B.burgdorferi-associated arthritis 11 (mouse)			Not determined		1	48889006	82889210	Mouse
1301430	Cdcs2_m	cytokine deficiency colitis susceptibility 2 (mouse)			Not determined		1	48892345	82892485	Mouse
10043965	Obq24_m	obesity QTL 24 (mouse)			Not determined		1	50890216	84890216	Mouse
4141305	Tgq9_m	triglyceride QTL 9 (mouse)			Not determined			51421605	85421605	Mouse
4142291	Aec2_m	autoimmune exocrinopathy 2 (mouse)			Not determined			52457737	182250592	Mouse
1357741	Nidd5k_m	Nidd5 on KK-A<y> (mouse)			Not determined		1	55974948	89975057	Mouse
4142467	Wbcq1_m	white blood cell quantitative locus 1 (mouse)			Not determined		1	56266214	90266360	Mouse
1357505	Vtbt1_m	vertebral trabecular bone trait 1 (mouse)			Not determined		1	56266214	90266360	Mouse
1558717	Ses1a_m	salmonella enteritidis susceptibility 1a (mouse)			Not determined		1	56726922	90727077	Mouse
1301933	Insq6_m	insulin QTL 6 (mouse)			Not determined		1	56726922	90727077	Mouse
14746998	Mancz1_m	mandible centroid size 1 (mouse)					1	57941351	91941351	Mouse
14747009	Manh49_m	mandible shape 49 (mouse)					1	57941351	91941351	Mouse
1300746	Skl1_m	skeletal size (tail length) 1 (mouse)			Not determined		1	57991977	91992080	Mouse
1357679	Egrm1_m	early growth rate, maternal effect 1 (mouse)			Not determined		1	57991977	91992080	Mouse
1301162	Skull1_m	skull morphology 1 (mouse)			Not determined		1	57991977	91992080	Mouse
1301667	Lxw5_m	lupus BXSB x NZW 5 (mouse)			Not determined		1	58549191	92549443	Mouse
1301444	Alcw5_m	alcohol withdrawal 5 (mouse)			Not determined		1	58549191	92549443	Mouse
1301748	Abbp1_m	A/J and C57BL/6 blood pressure 1 (mouse)			Not determined		1	62946755	120529678	Mouse
10412185	Hcs9_m	hepatocarcinogenesis susceptibility 9 (mouse)			Not determined		1	63854690	189303617	Mouse
1300841	Ssial1_m	susceptibility to sialadenitis 1 (mouse)			Not determined		1	63920002	153557562	Mouse
1302119	Cia15_m	collagen induced arthritis 15 (mouse)			Not determined		1	65889006	88496101	Mouse
27095918	Ulnl1_m	ulna length 1, 5 week (mouse)					1	67339159	129727737	Mouse
4141625	Emo4_m	emotionality 4 (mouse)			Not determined			68071345	86235027	Mouse
1302146	Cocrb1_m	cocaine related behavior 1 (mouse)			Not determined		1	70133533	104139557	Mouse
4141393	Mol2_m	modifier of LPS-response 2 (mouse)			Not determined			71624679	78183144	Mouse
13513915	Heal50_m	wound healing/ regeneration 50 (mouse)					1	71668880	73403586	Mouse

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001418282	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001418283	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001418284	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_175564	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC114905	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK034935	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK043681	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK084021	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK149157	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC116730	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC117087	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH466548	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSMUST00000027380 ⟹ ENSMUSP00000027380

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	1	72,323,528 - 72,342,263 (+)	Ensembl
GRCm38.p6 Ensembl	1	72,284,369 - 72,303,104 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000141783 ⟹ ENSMUSP00000114990

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	1	72,323,554 - 72,339,932 (+)	Ensembl
GRCm38.p6 Ensembl	1	72,284,395 - 72,300,773 (+)	Ensembl

RefSeq Acc Id:

NM_001418282 ⟹ NP_001405211

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	1	72,323,554 - 72,342,263 (+)	NCBI

RefSeq Acc Id:

NM_001418283 ⟹ NP_001405212

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	1	72,323,554 - 72,342,263 (+)	NCBI

RefSeq Acc Id:

NM_001418284 ⟹ NP_001405213

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	1	72,323,554 - 72,342,263 (+)	NCBI

RefSeq Acc Id:

NM_175564 ⟹ NP_780773

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	1	72,323,554 - 72,342,263 (+)	NCBI
GRCm38	1	72,284,373 - 72,302,995 (+)	NCBI
MGSCv37	1	72,330,947 - 72,349,569 (+)	RGD
Celera	1	72,852,729 - 72,871,243 (+)	RGD
cM Map	1		ENTREZGENE

Sequence:

show sequence

GCGGCGCGCTAGGCCTCCTCCCAGAGCTGGACCGCTCCTGGCGGCCGCCCGCAGCCGTCTGCAT
CCTCAGCTTCCCTCCTGGGTCCCAGTGAAGGTCGCAGGCATCCTCAGGGGCATGTCTGCATAGC
CCTTTCCCGATAGAAAAAAAACCTGTGTGATGTATGGCGCTTGAGTTTGCACAAACAAGTCAGA
CTCCTCTGTAAAGTAAGCTCAGCTAGCTCTCAGGCCTAGGATGGAAGAGTCGGCACCGGTGGAA
AGTCAGGGTCAGCTCCCAAGCCCCCACCACGGCTCACTGAGGAGGGCAGTGGCTGCTGTCCTGG
CCCTGGATGGGGAATCCACATTGGGCCGCAGGAAGAAGAGGAGGAAAGACTCCCGCCCGGAATC
CATCATCATCTACCGGTCAGATAATGAGAAGACGGATGAGGAGCCTGAAGAATCTGAAGGTGGA
GATCGGCCTAAAGAGGAAGAGGGGGAGGACTTCCTGGACTATCCTGGGGATGATGGTGTGTGGA
ACATGCCTCTGGACAGCCGCTATGTCACACTAACCGGGACCATCACACGAGGGAAGAAGAAGGG
TCAGATGGTGGATATCCATGTCACTCTGACAGAGAAGGAGCTGCAGGAGCTGACCAAACCCAAG
GAGCTGTCCAGGGAAGCAGCCCCCGAGGGAAGGAGGGCCTGCCAGGTCGGGGCGGACCAGGGGC
CACACGTGGTCCTCTGGACACTGGTCTGCCTGCCTGTGGTCTTTGTGCTCTCTTTCGTTGTGTC
TTTCTATTATGGCACCATCACCTGGTACAACATCTTTCTGGTGTACAATGAAGAGAGGACCTTC
TGGCATAAGATCTCCTGCTGTCCGTGCCTCATTCTCTTCTACCCAGTGCTCATCATGACCATGG
CCTCTTCCCTGGGGCTCTATGCCGCCGTGGCTCAGCTCTCATGGTCCTGGGCAGCGTGGTGGCG
AGCTGCCTGTGACATGGAGAAAGGCTTCTGTGGTTGGCTCTGCAGCAAGCTGGGTCTGGAGGAC
TGTTCTCCCTACAGCATTGTGGAACTGCTGGAGTCTGATAATATCTCGGGCAATCTCTCCAACA
AGGACCCCATCCAGGAGGTAGAAACCTCTACTGTCTAGACCTCTAGTGACTTCCTTCCTAGGTC
CTAGTTGTCTATAGTCATTCAATGGAATCTAGTAGTTCTTTCCTTAAACTATCTAATGCCCTCT
ACATTCCTGGGACAGCCTAGCCCACACTGGCGTAACTCATCATCTTCATTATTCCAAGATGACG
GAAAATAGAAAAGCGACTTGTGCCAAAGCCGTGCATCTGAAATACAAATGCGTCTTGACTCTTT
GCCCTATAATGACTGTTTATGTGCTACATGAAGATACATCATAAATTCCTTCAGGGGCCTGAAG
ATGTTATTGGTGCCTATGACCCAGGGGAGTGTGTGCCTAAATGTGACAGAAAGGATAAAGAGGC
TCAGGGGTGACCAGATCCGCCAAGATAATAGATGGGGATGGAGTGACACATTTAGGGAGTTAGG
CTATTAAAGACTGTGCATCACTGTATTTAGATAGAACTGCACATAACTAAAGCCACAAATATTA
GTGAGCCAAACAAGAGAGAAATATACTTCCTTTTTATGCAGATGTCAGGAGGCAGATCATCCCA
AGACCTATGAAGTTTTCTGGGGTTCACTGGATGGCAGAATGTGGCCCTTGGTGCTCCTCAGTTT
TTAAATATTGACTACAACTCTTAACTGTCATAGCAACAGAGATGGAAAGGAGAGCACACTCAGC
CTATTTAAGGAGGCTTTAAAAGCCTCCCCCCTCAATATTTATTATCTCTCATTGGCCATACTAT
AGTCACATGACCCCACAATCAAAGGATGCTGGGAAATGTAGTCTTTCATCTGGGCAATTATATT
CTTAGATGAATACTGGGGTTATGTGAATTTGAGAAAAGGGGGATAGTGGCTATTGGGTAGTCAA
GTACAAATCGATATCTTAGAACAGGTATTTAGATACATCCAGAATTCCAAATTACAAATGCAGC
TTTATTTGTTTATTTATATAATTATTTTGGCCCTAGTCTTAGATGGAGAGTTTATACATAGATC
TGAGTTACATATACTATGCATATGCCTTAGACAGTAGCATCTCGTGTACTTGGCAACTTAACCT
TTTGTCAAGTGGTTTCAGGGTTCTTTGGAAAGACCCATTAGATAGGAGCATATGGTCACACAGC
CACAGCACAATTCTTCCTGGAAAGGAAGGGGAACAGGGATTAACAGTATTTAATCTATAAAGAT
GGAGAAGAGAGAGAGATTGAGAGAGAGAGAGTAAATCTTCCAAACGCTAACCCAGCAGGGATCA
GTAGCTCAAAATTCAAACCACAGTTTGCCTGTGGTTTCACCAAACCTAGGAGCCTTATTCATTT
GCTCAGACCTTTCTAGCATGAAGCTTCTCTGACAGGGTTAGGAGTGATGTAACAGATTAATCCA
GATGAAAAGATTCTGGACTGGAGAAATAACAGCTTCATTTTTAAGAGTGTCCTGATTTCAAAAT
GCTGAGTCCCAAGAGGTCAGTGGGTTTGGGGTTTGGGTTCATAAAAGGAGCGATATTATTATTA
TTATTATCATTATTATTATCATTATTATTATTTTTGATGTGTGTGTCTCAGAAAGAAGTGCTCT
GAAGCACTCAACAAACCAGAGGGGTTGATCAAGCTCCCCCAAAACCAGCCAGGGACATTTATTT
AATGTATGGTGCTGAACTCCACTTTCAGAGAATTAAAAAAAAAATCCTGTTATTAGTTTGATC

hide sequence

Protein Sequences


Protein RefSeqs	NP_001405211	(Get FASTA)	NCBI Sequence Viewer
	NP_001405212	(Get FASTA)	NCBI Sequence Viewer
	NP_001405213	(Get FASTA)	NCBI Sequence Viewer
	NP_780773	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAI16731	(Get FASTA)	NCBI Sequence Viewer
	AAI17088	(Get FASTA)	NCBI Sequence Viewer
	BAC28886	(Get FASTA)	NCBI Sequence Viewer
	BAC31618	(Get FASTA)	NCBI Sequence Viewer
	EDL00280	(Get FASTA)	NCBI Sequence Viewer
	EDL00281	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSMUSP00000027380
	ENSMUSP00000027380.6
	ENSMUSP00000114990.2
GenBank Protein	Q8BG50	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_780773 ⟸ NM_175564

- UniProtKB:

Q8BG50 (UniProtKB/Swiss-Prot)

- Sequence:

show sequence

MEESAPVESQGQLPSPHHGSLRRAVAAVLALDGESTLGRRKKRRKDSRPESIIIYRSDNEKTDE
EPEESEGGDRPKEEEGEDFLDYPGDDGVWNMPLDSRYVTLTGTITRGKKKGQMVDIHVTLTEKE
LQELTKPKELSREAAPEGRRACQVGADQGPHVVLWTLVCLPVVFVLSFVVSFYYGTITWYNIFL
VYNEERTFWHKISCCPCLILFYPVLIMTMASSLGLYAAVAQLSWSWAAWWRAACDMEKGFCGWL
CSKLGLEDCSPYSIVELLESDNISGNLSNKDPIQEVETSTV

hide sequence

RefSeq Acc Id:

ENSMUSP00000027380 ⟸ ENSMUST00000027380

RefSeq Acc Id:

ENSMUSP00000114990 ⟸ ENSMUST00000141783

RefSeq Acc Id:	NP_001405212 ⟸ NM_001418283
- UniProtKB:	Q8BG50 (UniProtKB/Swiss-Prot)

RefSeq Acc Id:	NP_001405213 ⟸ NM_001418284
- UniProtKB:	Q8BG50 (UniProtKB/Swiss-Prot)

RefSeq Acc Id:	NP_001405211 ⟸ NM_001418282
- UniProtKB:	Q8BG50 (UniProtKB/Swiss-Prot)

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q8BG50-F1-model_v2	AlphaFold	Q8BG50	1-297	view protein structure

Promoters

RGD ID:

6874018

Promoter ID:

EPDNEW_M460

Type:

multiple initiation site

Name:

Tmem169_1

Description:

Mus musculus transmembrane protein 169 , mRNA.

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38	1	72,284,395 - 72,284,455	EPDNEW

RGD ID:

6818606

Promoter ID:

MM_KWN:1118

Type:

CpG-Island

SO ACC ID:

SO:0000170

Source:

MPROMDB

Tissues & Cell Lines:

3T3L1_Day0, 3T3L1_Day1, 3T3L1_Day2, 3T3L1_Day3, 3T3L1_Day4, 3T3L1_Day6, BoneMarrow_0Hour, Brain, ES_Cell, Kidney, Liver, Lung, MEF_B4, MEF_B6

Transcripts:

OTTMUST00000065965, OTTMUST00000065966, OTTMUST00000065967, OTTMUST00000065968, OTTMUST00000065970, UC007BKJ.1

Position:

Mouse Assembly	Chr	Position (strand)	Source
MGSCv36	1	72,330,576 - 72,331,076 (+)	MPROMDB

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	MGI:2442781	AgrOrtholog
Ensembl Genes	ENSMUSG00000026188	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript	ENSMUST00000027380	ENTREZGENE
	ENSMUST00000027380.12	UniProtKB/Swiss-Prot
	ENSMUST00000141783.2	UniProtKB/TrEMBL
InterPro	TMEM169	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	mmu:271711	UniProtKB/Swiss-Prot
MGD	MGI:2442781	ENTREZGENE
NCBI Gene	271711	ENTREZGENE
PANTHER	PTHR31777	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	TRANSMEMBRANE PROTEIN 169	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam	TMEM169	UniProtKB/Swiss-Prot
PhenoGen	Tmem169	PhenoGen
UniProt	D3YUR6_MOUSE	UniProtKB/TrEMBL
	Q8BG50	ENTREZGENE, UniProtKB/Swiss-Prot

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar