Ska2 (spindle and kinetochore associated complex subunit 2) - Rat Genome Database

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Gene: Ska2 (spindle and kinetochore associated complex subunit 2) Mus musculus
Analyze
Symbol: Ska2
Name: spindle and kinetochore associated complex subunit 2
RGD ID: 1316065
MGI Page MGI
Description: Predicted to enable microtubule binding activity. Involved in establishment of meiotic spindle orientation and spindle assembly involved in female meiosis. Located in meiotic spindle. Is expressed in several structures, including alimentary system; brain; early conceptus; genitourinary system; and respiratory system. Orthologous to human SKA2 (spindle and kinetochore associated complex subunit 2).
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: 1110001A07Rik; C78640; Fam3; Fam33a; family with sequence similarity 33, member A; MGC151378; RP23-352L3.5; SKA complex subunit 2; spindle and kinetochore-associated protein 2
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Related Pseudogenes: Gm4463   Ska2l-ps  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391187,000,087 - 87,013,800 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1187,000,060 - 87,015,461 (+)EnsemblGRCm39 Ensembl
GRCm381187,109,261 - 87,122,974 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1187,109,234 - 87,124,635 (+)EnsemblGRCm38mm10GRCm38
MGSCv371186,922,763 - 86,936,476 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361186,925,456 - 86,939,169 (+)NCBIMGSCv36mm8
Celera1196,711,276 - 96,725,039 (+)NCBICelera
Cytogenetic Map11CNCBI
cM Map1151.91NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
centrosome  (IEA)
cytoplasm  (IEA)
kinetochore  (ISO,NAS)
meiotic spindle  (IDA)
outer kinetochore  (IBA,ISO,ISS)
SKA complex  (IEA)
spindle microtubule  (IBA,IEA,ISO)

Molecular Function
microtubule binding  (IBA,ISO,ISS)
protein binding  (ISO)

Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Mouse MP Annotation Import Pipeline RGD automated import pipeline
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10349636   PMID:10725249   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:14610273   PMID:15489334   PMID:16141072   PMID:16141073  
PMID:17967808   PMID:18583474   PMID:18799693   PMID:21267068   PMID:21633384   PMID:21677750   PMID:21873635   PMID:22336914   PMID:24194600   PMID:27626380   PMID:28700664   PMID:30550785  
PMID:32554809   PMID:37132052   PMID:38355793   PMID:38528004  


Genomics

Comparative Map Data
Ska2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391187,000,087 - 87,013,800 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1187,000,060 - 87,015,461 (+)EnsemblGRCm39 Ensembl
GRCm381187,109,261 - 87,122,974 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1187,109,234 - 87,124,635 (+)EnsemblGRCm38mm10GRCm38
MGSCv371186,922,763 - 86,936,476 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361186,925,456 - 86,939,169 (+)NCBIMGSCv36mm8
Celera1196,711,276 - 96,725,039 (+)NCBICelera
Cytogenetic Map11CNCBI
cM Map1151.91NCBI
SKA2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381759,109,857 - 59,155,186 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1759,109,857 - 59,155,260 (-)EnsemblGRCh38hg38GRCh38
GRCh371757,187,218 - 57,232,547 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361754,542,090 - 54,587,582 (-)NCBINCBI36Build 36hg18NCBI36
Build 341754,543,742 - 54,587,343NCBI
Celera1753,649,948 - 53,695,816 (-)NCBICelera
Cytogenetic Map17q22NCBI
HuRef1752,547,893 - 52,593,823 (-)NCBIHuRef
CHM1_11757,252,805 - 57,298,295 (-)NCBICHM1_1
T2T-CHM13v2.01759,977,953 - 60,023,284 (-)NCBIT2T-CHM13v2.0
Ska2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81072,418,707 - 72,436,721 (+)NCBIGRCr8
mRatBN7.21071,921,474 - 71,939,461 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1071,921,582 - 71,939,458 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1076,532,084 - 76,549,889 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01076,036,988 - 76,054,793 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01071,501,512 - 71,519,317 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01074,413,989 - 74,431,922 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1074,413,989 - 74,431,922 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01075,668,741 - 75,686,674 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41075,383,081 - 75,400,888 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11075,397,450 - 75,415,258 (+)NCBI
Celera1070,837,768 - 70,855,580 (+)NCBICelera
Cytogenetic Map10q26NCBI
Ska2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554513,839,978 - 3,862,200 (+)NCBIChiLan1.0ChiLan1.0
SKA2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21975,277,226 - 75,322,545 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11780,090,268 - 80,133,900 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01753,181,345 - 53,226,761 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11758,030,137 - 58,076,113 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1758,030,137 - 58,076,113 (-)Ensemblpanpan1.1panPan2
SKA2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1933,692,089 - 33,728,398 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl933,692,302 - 33,728,281 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha932,925,938 - 32,962,035 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0934,497,651 - 34,533,814 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl934,495,485 - 34,533,816 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1933,283,420 - 33,319,561 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0933,572,430 - 33,608,584 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0933,659,101 - 33,695,267 (-)NCBIUU_Cfam_GSD_1.0
Ska2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560232,918,501 - 32,956,260 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049364904,119,050 - 4,157,491 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SKA2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1235,396,567 - 35,433,299 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11235,396,565 - 35,433,294 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21237,074,628 - 37,111,229 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SKA2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11634,266,937 - 34,306,970 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1634,267,161 - 34,304,686 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660775,069,273 - 5,109,026 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0

Variants

.
Variants in Ska2
1 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:983
Count of miRNA genes:565
Interacting mature miRNAs:654
Transcripts:ENSMUST00000020794, ENSMUST00000131202, ENSMUST00000142263
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
27226783Tibl5_mtibia length 5, 5 week (mouse)1168190826101890826Mouse
1300628Lgth6_mbody length 6 (mouse)Not determined1166733420100733652Mouse
4141367Inf1_macute ozone induced inflammation (mouse)Not determined44630038113058009Mouse
1558812Rafar_mretinoic acid induced forelimb autopod reduction (mouse)Not determined1170691198104691366Mouse
1300766Skull16_mskull morphology 16 (mouse)Not determined1181574481115574636Mouse
1301404Sbmd4_mspinal bone mineral density 4 (mouse)Not determined1172019649106019734Mouse
4142121Tmc1m2_mTmc1 modifier 2 (mouse)Not determined1156864027114157957Mouse
27226758Femd3_mfemur midshaft diameter 3, 5 week (mouse)1180890826101890826Mouse
14747003Mancz9_mmandible centroid size 9 (mouse)1185844911119844911Mouse
1301640Lore4_mloss of righting induced by ethanol 4 (mouse)Not determined1179156009107616472Mouse
10412288Carg4_mCandida albicans resistance gene 4 (mouse)Not determined1181810267115810267Mouse
1357878Mastr_mmodifier of astrocytoma (mouse)Not determined114570858189818733Mouse
1301681Sle13_msystematic lupus erythematosus susceptibility 13 (mouse)Not determined1170691198104691366Mouse
1300784Prdt3_mprion disease incubation time 3 (mouse)Not determined1166733420100733652Mouse
4141339Nilac2_mnicotine induced locomotor activity 2 (mouse)Not determined1170691198104691366Mouse
10413882Moe1_mmodifier of epilepsy 1 (mouse)1177770978111771099Mouse
11039501Ltpr6a_mLeishmania tropica response 6a (mouse)116483033698830473Mouse
13208559Wght10_mweight 10 (mouse)11395000088890826Mouse
11039502Ltpr6b_mLeishmania tropica response 6b (mouse)116483033698830473Mouse
13208558Lgth12_mbody length 12 (mouse)11395000094890826Mouse
10045616Heal25_mwound healing/regeneration 25 (mouse)Not determined1177437183111437322Mouse
1300664Etohcta9_methanol conditioned taste aversion 9 (mouse)Not determined115775466091754758Mouse
1301310Tmevd5_mTheiler's murine encephalomyelitis virus induced demyelinating disease susceptibility 5 (mouse)Not determined1172726125106726289Mouse
1300924Ity2_mimmunity to S. typhimurium 2 (mouse)Not determined15850803087695238Mouse
11039515Ltpr6_mLeishmania tropica response 6 (mouse)116483033698830473Mouse
4142348Pstc2_mperiosteal circumference 2 (mouse)Not determined1172818615106818733Mouse
1300774Pgia7_mproteoglycan induced arthritis 7 (mouse)Not determined115339058887390737Mouse
1301414Heal10_mwound healing/regeneration 10 (mouse)Not determined1177437183111437322Mouse
15092049Wsigrme3_mweek six growth rate, maternal effect 3 (mouse)118487732496629512Mouse
1300651Pcyts3_mplasmacytoma susceptibility 3 (mouse)Not determined1170691198104691366Mouse
1301546Pcir2_mperiosteal circumference 2 (mouse)Not determined1166733420100733652Mouse
1300905Scc6_mcolon tumor susceptibility 6 (mouse)Not determined11688027789019734Mouse
1300649Crhq1_mcompensatory renal hypertrophy QTL 1 (mouse)Not determined1181574481115574636Mouse
14746970Manh71_mmandible shape 71 (mouse)1179416257113416257Mouse
15092057Lgrme3_mlate growth rate, maternal effect 3 (mouse)118487732496629512Mouse
10043865T2dm5sa_mtype 2 diabetes mellitus 5 in SMXA RI mice (mouse)Not determined1179813759104502698Mouse
39128214Lwq20_mliver weight QTL 20 (mouse)1112268637118022724Mouse
10043866Adip19_madiposity 19 (mouse)Not determined1172818615106818733Mouse
1301072Eae22_mexperimental allergic encephalomyelitis 22 (mouse)Not determined1182377698116377820Mouse
10412246Dfs2_mdental fluorosis suseptibility 2 (mouse)Not determined112180736495881231Mouse
11038695Par8_mpulmonary adenoma resistance 8 (mouse)1177063779111063918Mouse
1357766Si5lq6_mserum IGFBP-5 level QTL 6 (mouse)Not determined1166733420100733652Mouse
1301319Dautb4_mdopamine uptake transporter binding 4 (mouse)Not determined116215600596156153Mouse
1301833Tbbmd5_mtotal body bone mineral density 5 (mouse)Not determined1166733420100733652Mouse
15014785Mvlq1_mmacrovesicular liver lesion QTL 1 (mouse)1186608320120608320Mouse
4141012Femwf6_mfemur work to failure 6 (mouse)Not determined66733420100733652Mouse
15039374Adip29_madiposity 29 (mouse)1186608320120608320Mouse
1301987Pid3_mprior incubation determinant 3 (mouse)Not determined116168682088699728Mouse
27226730Tibmd1_mtibia midshaft diameter 1, 5 week (mouse)1162590826109390826Mouse
15039376Bw42_mbody weight QTL 42 (mouse)1186608320120608320Mouse
4141894Nidd6k_mNidd6 on KK-A (mouse)Not determined1912420496897826Mouse
10044004Stzid3_mstreptozotocin induced diabetes susceptibility 3 (mouse)Not determined116331940794063918Mouse
1302124Eae7_msusceptibility to experimental allergic encephalomyelitis 7 (mouse)Not determined117757387399377820Mouse

Markers in Region
RH126409  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381187,122,528 - 87,122,744UniSTSGRCm38
MGSCv371186,936,030 - 86,936,246UniSTSGRCm37
Celera1196,724,593 - 96,724,809UniSTS
Cytogenetic Map11CUniSTS
Whitehead/MRC_RH111120.2UniSTS
D10Mit157.2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map6D1UniSTS
Cytogenetic Map16B4UniSTS
Cytogenetic Map18E2UniSTS
Cytogenetic Map4C3UniSTS
Cytogenetic Map7B2UniSTS
Cytogenetic Map4D2.3UniSTS
Cytogenetic Map11E1UniSTS
Cytogenetic Map14E2.2UniSTS
Cytogenetic Map4C7UniSTS
Cytogenetic Map2H4UniSTS
Cytogenetic Map1FUniSTS
Cytogenetic Map6C3UniSTS
Cytogenetic Map11DUniSTS
Cytogenetic Map3G2UniSTS
Cytogenetic Map17A1UniSTS
Cytogenetic Map9F2UniSTS
Cytogenetic Map12F1UniSTS
Cytogenetic Map19C2UniSTS
Cytogenetic Map3BUniSTS
Cytogenetic Map8C1UniSTS
Cytogenetic Map18A2UniSTS
Cytogenetic Map3F2UniSTS
Cytogenetic Map14C3UniSTS
Cytogenetic Map8E1UniSTS
Cytogenetic Map8E2UniSTS
Cytogenetic Map5B1UniSTS
Cytogenetic Map18B1UniSTS
Cytogenetic Map9CUniSTS
Cytogenetic Map14C2UniSTS
Cytogenetic Map6A1UniSTS
Cytogenetic Map10B4UniSTS
Cytogenetic Map13D2.1UniSTS
Cytogenetic Map5E5UniSTS
Cytogenetic Map11B1.3UniSTS
Cytogenetic Map4D1UniSTS
Cytogenetic Map9A5.2UniSTS
Cytogenetic Map3F1UniSTS
Cytogenetic Map17E3UniSTS
Cytogenetic Map11B3UniSTS
Cytogenetic Map1H4UniSTS
Cytogenetic Map6A3UniSTS
Cytogenetic Map5E4-E5UniSTS
Cytogenetic Map15E1UniSTS
Cytogenetic Map13DUniSTS
Cytogenetic Map14BUniSTS
Cytogenetic Map14D1UniSTS
Cytogenetic Map7B4UniSTS
Cytogenetic Map8D3UniSTS
Cytogenetic MapXDUniSTS
Cytogenetic Map17A3.3UniSTS
Cytogenetic Map7E2UniSTS
Cytogenetic Map1H2.3UniSTS
Cytogenetic Map7A2UniSTS
Cytogenetic Map7F3UniSTS
Cytogenetic Map9F1UniSTS
Cytogenetic Map10C1UniSTS
Cytogenetic Map4E2UniSTS
Cytogenetic Map16A1UniSTS
Cytogenetic Map8B3.3UniSTS
Cytogenetic Map8D2UniSTS
Cytogenetic Map3DUniSTS
Cytogenetic Map15D2UniSTS
Cytogenetic Map17B1UniSTS
Cytogenetic Map7A3UniSTS
Cytogenetic Map15F1UniSTS
Cytogenetic Map16B2UniSTS
Cytogenetic Map7CUniSTS
Cytogenetic Map3F2.1UniSTS
Cytogenetic Map6F3UniSTS
Cytogenetic Map1C4UniSTS
Cytogenetic Map11E2UniSTS
Cytogenetic Map11B5UniSTS
Cytogenetic Map9F3UniSTS
Cytogenetic Map2BUniSTS
Cytogenetic Map13B3UniSTS
Cytogenetic Map9A4UniSTS
Cytogenetic Map5A3UniSTS
Cytogenetic Map2H1UniSTS
Cytogenetic Map16B1UniSTS
Cytogenetic Map1A5UniSTS
Cytogenetic Map11CUniSTS
Cytogenetic Map9E1UniSTS
Cytogenetic Map6G1UniSTS
Cytogenetic MapXA2UniSTS
Cytogenetic Map13B1UniSTS
Cytogenetic Map5E2UniSTS
Cytogenetic Map12C1UniSTS
Cytogenetic Map5FUniSTS
Cytogenetic Map4D3UniSTS
Cytogenetic Map10C2UniSTS
Cytogenetic Map9BUniSTS
Cytogenetic Map5G2UniSTS
Cytogenetic Map7F1UniSTS
Cytogenetic Map12C3UniSTS
Cytogenetic Map10A4UniSTS
Cytogenetic Map8A2UniSTS
Cytogenetic Map18A1UniSTS
Cytogenetic Map12A1.1UniSTS
Cytogenetic Map1C2UniSTS
Cytogenetic Map11B2UniSTS
Cytogenetic Map6E3UniSTS
Cytogenetic Map5C3.3UniSTS
Cytogenetic Map1BUniSTS
Cytogenetic Map17A3.1UniSTS
Cytogenetic Map7A1UniSTS
Cytogenetic Map2E5UniSTS
Cytogenetic Map11A1UniSTS
Cytogenetic Map4B1UniSTS
Cytogenetic Map15A2UniSTS
Cytogenetic Map8C3UniSTS
Cytogenetic Map2A3UniSTS
Cytogenetic Map5G3UniSTS
Cytogenetic Map4A3UniSTS
Cytogenetic Map2H3UniSTS
Cytogenetic Map8A1UniSTS
Cytogenetic Map8A1.1UniSTS
Cytogenetic Map16A3UniSTS
Cytogenetic Map10B1UniSTS
Cytogenetic Map19AUniSTS
Cytogenetic Map10A1UniSTS
Cytogenetic Map13D1UniSTS
Cytogenetic Map4A1UniSTS
Cytogenetic Map9A3UniSTS
Cytogenetic Map17CUniSTS
Cytogenetic Map1DUniSTS
Cytogenetic Map5E3UniSTS
Cytogenetic Map15D3UniSTS
Cytogenetic Map2H2UniSTS
Cytogenetic Map7D3UniSTS
Cytogenetic Map2A1UniSTS
Cytogenetic Map14C1UniSTS
Cytogenetic Map14E5UniSTS
Cytogenetic Map10CUniSTS
Cytogenetic Map18B2UniSTS
Cytogenetic Map2F1UniSTS
Cytogenetic Map10D3UniSTS
Cytogenetic Map17A2UniSTS
Cytogenetic Map2C3UniSTS
Cytogenetic Map1C3UniSTS
Cytogenetic Map17B2UniSTS
Cytogenetic Map5B2UniSTS
Cytogenetic Map5G1UniSTS
Cytogenetic Map4C6UniSTS
Cytogenetic Map13C3UniSTS
Cytogenetic Map2E1UniSTS
Cytogenetic Map17A3.2-A3.3UniSTS
Cytogenetic Map19C3UniSTS
Cytogenetic Map7E3UniSTS
Cytogenetic Map13C1UniSTS
Cytogenetic Map9E3.1UniSTS
Cytogenetic Map15E3UniSTS
Cytogenetic Map6B1UniSTS
Cytogenetic MapXE3UniSTS
Cytogenetic Map4C4UniSTS
Cytogenetic Map3E3UniSTS
Cytogenetic Map11A4UniSTS
Cytogenetic Map4C5UniSTS
Cytogenetic Map18B3UniSTS
Cytogenetic Map9A2UniSTS
Cytogenetic Map7E1UniSTS
Cytogenetic Map5D-E1UniSTS
Cytogenetic Map5B3UniSTS
Cytogenetic Map13A2-A3UniSTS
Cytogenetic Map5A2UniSTS
Cytogenetic Map4B3UniSTS
Cytogenetic Map1E4UniSTS
Cytogenetic Map17E4UniSTS
Cytogenetic Map1G2UniSTS
Cytogenetic Map15B3.1UniSTS
Cytogenetic Map12EUniSTS
Cytogenetic MapXA5UniSTS
Cytogenetic Map6A3.3UniSTS
Cytogenetic Map6G3UniSTS
Cytogenetic Map6F2UniSTS
Cytogenetic Map5C1UniSTS
Cytogenetic Map4D2.1UniSTS
Cytogenetic Map4A5UniSTS
Cytogenetic Map3F2.2UniSTS
Cytogenetic Map1E3-E4UniSTS
Cytogenetic Map9F1-F3UniSTS
Cytogenetic Map1C1.1UniSTS
Cytogenetic Map14D2UniSTS
Cytogenetic Map12A2UniSTS
Cytogenetic Map17A3-BUniSTS
Cytogenetic Map7F5UniSTS
Cytogenetic Map14A3UniSTS
Cytogenetic Map5G1.1UniSTS
Cytogenetic MapXF2-F4UniSTS
Cytogenetic Map7D2UniSTS
Cytogenetic Map2F3UniSTS
Cytogenetic Map10A3UniSTS
Cytogenetic MapXA7.3UniSTS
Cytogenetic Map9F1-F2UniSTS
Cytogenetic Map13A3.2UniSTS
Cytogenetic Map10A2UniSTS
Cytogenetic Map1C1UniSTS
Cytogenetic Map1A1UniSTS
Cytogenetic Map12D3UniSTS
Cytogenetic Map1A3-A5UniSTS
Cytogenetic Map2A2UniSTS
Cytogenetic Map3A1UniSTS
Cytogenetic MapXA3.3UniSTS
Cytogenetic Map16A-B1UniSTS
Cytogenetic Map1D2.3UniSTS
Cytogenetic Map6B2.3UniSTS
Cytogenetic Map2G3UniSTS
Cytogenetic MapXA2-A3.1UniSTS
Cytogenetic Map9A5.3UniSTS
Cytogenetic Map14A2-BUniSTS
Cytogenetic Map8E1-E2UniSTS
Cytogenetic Map8A3UniSTS
Cytogenetic Map1G3-H1UniSTS
Cytogenetic Map8B3-C1UniSTS
Cytogenetic Map19C1UniSTS
Cytogenetic Map8C5UniSTS
Cytogenetic Map8A4UniSTS
Cytogenetic Map15F3UniSTS
Cytogenetic Map14E4UniSTS
Cytogenetic Map4D2.2UniSTS
Cytogenetic MapXF5UniSTS
cM Map1040.0UniSTS
Whitehead Genetic1033.9UniSTS


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSMUST00000020794   ⟹   ENSMUSP00000020794
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1187,000,060 - 87,015,461 (+)Ensembl
GRCm38.p6 Ensembl1187,109,234 - 87,124,635 (+)Ensembl
Ensembl Acc Id: ENSMUST00000131202
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1187,006,695 - 87,012,933 (+)Ensembl
GRCm38.p6 Ensembl1187,115,869 - 87,122,107 (+)Ensembl
Ensembl Acc Id: ENSMUST00000142263
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1187,000,077 - 87,015,460 (+)Ensembl
GRCm38.p6 Ensembl1187,109,251 - 87,124,634 (+)Ensembl
RefSeq Acc Id: NM_025377   ⟹   NP_079653
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391187,000,087 - 87,013,800 (+)NCBI
GRCm381187,109,261 - 87,122,974 (+)ENTREZGENE
MGSCv371186,922,763 - 86,936,476 (+)RGD
Celera1196,711,276 - 96,725,039 (+)RGD
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: NP_079653   ⟸   NM_025377
- UniProtKB: B2KGY1 (UniProtKB/Swiss-Prot),   Q9CR46 (UniProtKB/Swiss-Prot)
- Sequence:
Ensembl Acc Id: ENSMUSP00000020794   ⟸   ENSMUST00000020794

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9CR46-F1-model_v2 AlphaFold Q9CR46 1-120 view protein structure

Promoters
RGD ID:6821895
Promoter ID:MM_KWN:9046
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day2,   BoneMarrow_4Hour,   Lung,   MEF_B4
Transcripts:OTTMUST00000002440,   OTTMUST00000067491
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361186,922,016 - 86,922,802 (+)MPROMDB
RGD ID:6821898
Promoter ID:MM_KWN:9048
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour
Transcripts:OTTMUST00000002441
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361186,928,876 - 86,929,376 (+)MPROMDB
RGD ID:8676038
Promoter ID:EPDNEW_M16050
Type:initiation region
Name:Ska2_1
Description:Mus musculus spindle and kinetochore associated complex subunit2 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381187,109,261 - 87,109,321EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1913390 AgrOrtholog
Ensembl Genes ENSMUSG00000020492 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000020794 ENTREZGENE
  ENSMUST00000020794.6 UniProtKB/Swiss-Prot
Gene3D-CATH 6.10.250.1380 UniProtKB/Swiss-Prot
InterPro Ska2 UniProtKB/Swiss-Prot
  Ska2_N UniProtKB/Swiss-Prot
KEGG Report mmu:66140 UniProtKB/Swiss-Prot
MGD MGI:1913390 ENTREZGENE
NCBI Gene 66140 ENTREZGENE
PANTHER PTHR32017 UniProtKB/Swiss-Prot
  SPINDLE AND KINETOCHORE-ASSOCIATED PROTEIN 2 UniProtKB/Swiss-Prot
Pfam SKA2 UniProtKB/Swiss-Prot
PhenoGen Ska2 PhenoGen
UniProt B2KGY1 ENTREZGENE
  Q8BNA9_MOUSE UniProtKB/TrEMBL
  Q9CR46 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary B2KGY1 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2012-07-31 Ska2  spindle and kinetochore associated complex subunit 2  Fam33a  family with sequence similarity 33, member A  Symbol and/or name change 5135510 APPROVED