Pan3 (PAN3 poly(A) specific ribonuclease subunit) - Rat Genome Database
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Gene: Pan3 (PAN3 poly(A) specific ribonuclease subunit) Mus musculus
Analyze
Symbol: Pan3
Name: PAN3 poly(A) specific ribonuclease subunit
RGD ID: 1316061
MGI Page MGI
Description: Predicted to contribute to poly(A)-specific ribonuclease activity. Involved in deadenylation-dependent decapping of nuclear-transcribed mRNA; positive regulation of cytoplasmic mRNA processing body assembly; and protein targeting. Localizes to P-body. Orthologous to human PAN3 (poly(A) specific ribonuclease subunit PAN3); PARTICIPATES IN microRNA pathway; INTERACTS WITH 1,2-dimethylhydrazine; 2,3,7,8-tetrachlorodibenzodioxine; aflatoxin B1.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: 2700050F09Rik; A430027N15Rik; AU014670; MGC102350; MGC99847; PAB-dependent poly(A)-specific ribonuclease subunit 3; PAB-dependent poly(A)-specific ribonuclease subunit PAN3; PAB1P-dependent poly(A)-nuclease; PAB1P-dependent poly(A)-specific ribonuclease; Pabp-dependent poly(A) nuclease 3; Pabp1-dependent poly A-specific ribonuclease subunit Pan3; PAN deadenylation complex subunit 3; PAN2-PAN3 deadenylation complex subunit Pan3; PAN3 polyA specific ribonuclease subunit homolog; poly(A)-nuclease deadenylation complex subunit 3
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395147,363,018 - 147,485,311 (+)NCBIGRCm39mm39
GRCm385147,426,208 - 147,548,501 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5147,430,161 - 147,548,502 (+)EnsemblGRCm38mm10GRCm38
MGSCv375148,242,156 - 148,360,077 (+)NCBIGRCm37mm9NCBIm37
MGSCv365147,741,238 - 147,858,845 (+)NCBImm8
Celera5145,424,005 - 145,541,898 (+)NCBICelera
Cytogenetic Map5G3NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (IEA)
P-body  (IBA,IDA)
PAN complex  (IBA,ISO)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

Additional References at PubMed
PMID:10349636   PMID:10725249   PMID:11042159   PMID:11076861   PMID:11544199   PMID:11812828   PMID:12477932   PMID:12520002   PMID:12904583   PMID:14610273   PMID:15489334   PMID:15747579  
PMID:16141072   PMID:16141073   PMID:17595167   PMID:18625844   PMID:18799693   PMID:21873635   PMID:31138677  


Genomics

Comparative Map Data
Pan3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395147,363,018 - 147,485,311 (+)NCBIGRCm39mm39
GRCm385147,426,208 - 147,548,501 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5147,430,161 - 147,548,502 (+)EnsemblGRCm38mm10GRCm38
MGSCv375148,242,156 - 148,360,077 (+)NCBIGRCm37mm9NCBIm37
MGSCv365147,741,238 - 147,858,845 (+)NCBImm8
Celera5145,424,005 - 145,541,898 (+)NCBICelera
Cytogenetic Map5G3NCBI
PAN3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1328,138,506 - 28,295,335 (+)EnsemblGRCh38hg38GRCh38
GRCh381328,135,021 - 28,295,335 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh371328,710,997 - 28,869,475 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361327,646,417 - 27,767,472 (+)NCBINCBI36hg18NCBI36
Celera139,787,744 - 9,944,258 (+)NCBI
Cytogenetic Map13q12.2NCBI
HuRef139,533,856 - 9,690,407 (+)NCBIHuRef
CHM1_11328,681,211 - 28,837,730 (+)NCBICHM1_1
Pan3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.0129,214,116 - 9,331,901 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl129,216,536 - 9,331,195 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01211,333,266 - 11,449,831 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4128,046,162 - 8,165,081 (-)NCBIRGSC3.4rn4RGSC3.4
Celera129,218,136 - 9,336,110 (-)NCBICelera
Cytogenetic Map12p11NCBI
Pan3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554977,500,748 - 7,647,255 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554977,500,478 - 7,646,541 (+)NCBIChiLan1.0ChiLan1.0
PAN3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11327,797,325 - 27,921,266 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1327,798,607 - 27,921,266 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0139,420,405 - 9,579,859 (+)NCBIMhudiblu_PPA_v0panPan3
PAN3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl2511,417,657 - 11,550,810 (-)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.12511,416,321 - 11,550,830 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Pan3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_00493647223,297,679 - 23,434,107 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PAN3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl115,486,889 - 5,614,454 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1115,487,019 - 5,614,458 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2115,173,907 - 5,301,062 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PAN3
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.137,249,596 - 7,405,770 (+)NCBI
ChlSab1.1 Ensembl37,249,298 - 7,405,910 (+)Ensembl
Pan3
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462477610,224,772 - 10,364,816 (-)NCBI

Position Markers
AU014670  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm385147,531,428 - 147,531,634UniSTSGRCm38
MGSCv375148,343,004 - 148,343,210UniSTSGRCm37
Celera5145,524,879 - 145,525,085UniSTS
Cytogenetic Map5G2UniSTS
Whitehead/MRC_RH51756.56UniSTS
UniSTS:235366  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm385147,479,699 - 147,479,852UniSTSGRCm38
MGSCv375148,291,275 - 148,291,428UniSTSGRCm37
Celera5145,473,192 - 145,473,345UniSTS
Cytogenetic Map5G2UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
11049557Lmr26_mleishmaniasis resistance 26 (mouse)5134002093151834684Mouse
4141081Nidd7k_mNidd7 on KK-A (mouse)Not determined119806972149423861Mouse
1302079Lbw3_mlupus NZB x NZW 3 (mouse)Not determined5124714580151834684Mouse
1301857Bglq14_mbody growth late QTL 14 (mouse)Not determined5118920110151834684Mouse
11528552Scram1_mspinal cord resistance to astrocytoma modifier 1 (mouse)5121457140151834684Mouse
12880406Jcdq2_mjoint cartilage degeneration QTL 2 (mouse)5129851021151834684Mouse
1301226Bbaa2_mB.burgdorferi-associated arthritis 2 (mouse)Not determined5115128044149128176Mouse
4141218Ath24_matherosclerosis 24 (mouse)Not determined129583274151834684Mouse
1300827Cora1_mcorrelation in cytokine production 1 (mouse)Not determined5115128044149128176Mouse
1301363Pbwg13_mpostnatal body weight growth 13 (mouse)Not determined5125147702151834684Mouse
1301986Bpq4_mblood pressure QTL 4 (mouse)Not determined5121556974151834684Mouse
13504734Ifvrq4_minfluenza virus resistance QTL 4 (mouse)5140000000153000000Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:5542
Count of miRNA genes:879
Interacting mature miRNAs:1234
Transcripts:ENSMUST00000031651, ENSMUST00000175807, ENSMUST00000176202, ENSMUST00000176357, ENSMUST00000176466, ENSMUST00000176505, ENSMUST00000176553, ENSMUST00000176596, ENSMUST00000176600, ENSMUST00000176753, ENSMUST00000176806, ENSMUST00000176817, ENSMUST00000176856, ENSMUST00000177327, ENSMUST00000177328, ENSMUST00000177465, ENSMUST00000177496
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001359433 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_028291 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006504868 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006504869 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006504870 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006504871 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006504872 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006504873 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006504877 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006504878 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017321113 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030254831 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036165529 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036165530 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004942570 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004942571 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004942572 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004942573 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004942574 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004942575 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AA260632 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC131730 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC134441 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK012409 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK028869 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK039912 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK039948 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK046685 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK153632 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC013826 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC034218 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC061486 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC082547 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC086321 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BE631004 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BI985849 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BP764219 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CB722719 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CD544145 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CF743030 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466614 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CX239467 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000031651   ⟹   ENSMUSP00000031651
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl5147,430,161 - 147,548,502 (+)Ensembl
RefSeq Acc Id: ENSMUST00000175807   ⟹   ENSMUSP00000135729
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl5147,519,687 - 147,548,496 (+)Ensembl
RefSeq Acc Id: ENSMUST00000176202
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl5147,430,896 - 147,455,336 (+)Ensembl
RefSeq Acc Id: ENSMUST00000176357
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl5147,453,258 - 147,492,524 (+)Ensembl
RefSeq Acc Id: ENSMUST00000176466   ⟹   ENSMUSP00000135673
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl5147,430,896 - 147,527,026 (+)Ensembl
RefSeq Acc Id: ENSMUST00000176505
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl5147,529,733 - 147,548,488 (+)Ensembl
RefSeq Acc Id: ENSMUST00000176553   ⟹   ENSMUSP00000134911
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl5147,539,277 - 147,548,493 (+)Ensembl
RefSeq Acc Id: ENSMUST00000176596   ⟹   ENSMUSP00000135477
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl5147,453,289 - 147,548,496 (+)Ensembl
RefSeq Acc Id: ENSMUST00000176600   ⟹   ENSMUSP00000135367
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl5147,430,453 - 147,548,496 (+)Ensembl
RefSeq Acc Id: ENSMUST00000176753   ⟹   ENSMUSP00000134989
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl5147,450,660 - 147,545,945 (+)Ensembl
RefSeq Acc Id: ENSMUST00000176806
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl5147,529,938 - 147,531,745 (+)Ensembl
RefSeq Acc Id: ENSMUST00000176817
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl5147,530,014 - 147,533,353 (+)Ensembl
RefSeq Acc Id: ENSMUST00000176856
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl5147,537,216 - 147,545,680 (+)Ensembl
RefSeq Acc Id: ENSMUST00000177327
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl5147,450,656 - 147,488,453 (+)Ensembl
RefSeq Acc Id: ENSMUST00000177328
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl5147,519,286 - 147,526,680 (+)Ensembl
RefSeq Acc Id: ENSMUST00000177465   ⟹   ENSMUSP00000134810
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl5147,450,660 - 147,545,945 (+)Ensembl
RefSeq Acc Id: ENSMUST00000177496
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl5147,536,324 - 147,543,125 (+)Ensembl
RefSeq Acc Id: ENSMUST00000200885   ⟹   ENSMUSP00000144495
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl5147,450,740 - 147,526,650 (+)Ensembl
RefSeq Acc Id: ENSMUST00000201248
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl5147,517,502 - 147,521,250 (+)Ensembl
RefSeq Acc Id: ENSMUST00000201799
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl5147,451,744 - 147,454,109 (+)Ensembl
RefSeq Acc Id: ENSMUST00000202559
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl5147,531,401 - 147,533,299 (+)Ensembl
RefSeq Acc Id: ENSMUST00000202732
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl5147,526,093 - 147,527,007 (+)Ensembl
RefSeq Acc Id: ENSMUST00000202884
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl5147,430,896 - 147,453,731 (+)Ensembl
RefSeq Acc Id: NM_001359433   ⟹   NP_001346362
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395147,366,966 - 147,485,311 (+)NCBI
GRCm385147,430,156 - 147,548,501 (+)NCBI
Sequence:
RefSeq Acc Id: NM_028291   ⟹   NP_082567
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395147,366,966 - 147,485,311 (+)NCBI
GRCm385147,430,156 - 147,548,501 (+)NCBI
MGSCv375148,242,156 - 148,360,077 (+)RGD
Celera5145,424,005 - 145,541,898 (+)RGD
cM Map5 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006504868   ⟹   XP_006504931
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395147,363,018 - 147,485,310 (+)NCBI
GRCm385147,426,208 - 147,548,500 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006504869   ⟹   XP_006504932
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395147,363,018 - 147,485,310 (+)NCBI
GRCm385147,426,208 - 147,548,500 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006504870   ⟹   XP_006504933
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395147,363,018 - 147,485,310 (+)NCBI
GRCm385147,430,580 - 147,548,500 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006504871   ⟹   XP_006504934
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395147,363,018 - 147,485,310 (+)NCBI
GRCm385147,426,208 - 147,548,500 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006504872   ⟹   XP_006504935
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395147,363,018 - 147,485,310 (+)NCBI
GRCm385147,426,208 - 147,548,500 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006504873   ⟹   XP_006504936
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395147,363,018 - 147,485,310 (+)NCBI
GRCm385147,426,208 - 147,548,500 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006504877   ⟹   XP_006504940
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395147,429,337 - 147,485,310 (+)NCBI
GRCm385147,492,520 - 147,548,500 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006504878   ⟹   XP_006504941
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395147,363,018 - 147,485,310 (+)NCBI
GRCm385147,430,896 - 147,548,500 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017321113   ⟹   XP_017176602
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395147,363,018 - 147,485,310 (+)NCBI
GRCm385147,426,208 - 147,548,500 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030254831   ⟹   XP_030110691
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395147,429,360 - 147,485,310 (+)NCBI
GRCm385147,492,549 - 147,548,500 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036165529   ⟹   XP_036021422
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395147,363,018 - 147,485,310 (+)NCBI
RefSeq Acc Id: XM_036165530   ⟹   XP_036021423
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395147,363,018 - 147,485,310 (+)NCBI
RefSeq Acc Id: XR_004942570
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395147,363,018 - 147,485,310 (+)NCBI
RefSeq Acc Id: XR_004942571
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395147,363,018 - 147,485,310 (+)NCBI
RefSeq Acc Id: XR_004942572
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395147,363,018 - 147,485,310 (+)NCBI
RefSeq Acc Id: XR_004942573
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395147,363,018 - 147,485,310 (+)NCBI
RefSeq Acc Id: XR_004942574
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395147,363,018 - 147,481,442 (+)NCBI
RefSeq Acc Id: XR_004942575
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395147,367,782 - 147,485,310 (+)NCBI
Reference Sequences
RefSeq Acc Id: NP_082567   ⟸   NM_028291
- Peptide Label: isoform 1
- UniProtKB: Q640Q5 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006504933   ⟸   XM_006504870
- Peptide Label: isoform X3
- UniProtKB: H3BKF3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006504931   ⟸   XM_006504868
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006504932   ⟸   XM_006504869
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_006504936   ⟸   XM_006504873
- Peptide Label: isoform X8
- Sequence:
RefSeq Acc Id: XP_006504934   ⟸   XM_006504871
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_006504935   ⟸   XM_006504872
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_006504941   ⟸   XM_006504878
- Peptide Label: isoform X11
- Sequence:
RefSeq Acc Id: XP_006504940   ⟸   XM_006504877
- Peptide Label: isoform X10
- Sequence:
RefSeq Acc Id: XP_017176602   ⟸   XM_017321113
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: NP_001346362   ⟸   NM_001359433
- Peptide Label: isoform 2
RefSeq Acc Id: XP_030110691   ⟸   XM_030254831
- Peptide Label: isoform X9
RefSeq Acc Id: ENSMUSP00000031651   ⟸   ENSMUST00000031651
RefSeq Acc Id: ENSMUSP00000134810   ⟸   ENSMUST00000177465
RefSeq Acc Id: ENSMUSP00000134989   ⟸   ENSMUST00000176753
RefSeq Acc Id: ENSMUSP00000135673   ⟸   ENSMUST00000176466
RefSeq Acc Id: ENSMUSP00000134911   ⟸   ENSMUST00000176553
RefSeq Acc Id: ENSMUSP00000135477   ⟸   ENSMUST00000176596
RefSeq Acc Id: ENSMUSP00000135367   ⟸   ENSMUST00000176600
RefSeq Acc Id: ENSMUSP00000135729   ⟸   ENSMUST00000175807
RefSeq Acc Id: ENSMUSP00000144495   ⟸   ENSMUST00000200885
RefSeq Acc Id: XP_036021422   ⟸   XM_036165529
- Peptide Label: isoform X7
RefSeq Acc Id: XP_036021423   ⟸   XM_036165530
- Peptide Label: isoform X9
Protein Domains
C3H1-type   Pan3_PK   Protein kinase

Promoters
RGD ID:6888816
Promoter ID:EPDNEW_M7859
Type:multiple initiation site
Name:Pan3_1
Description:Mus musculus PAN3 poly specific ribonuclease subunit , transcriptvariant 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm385147,430,582 - 147,430,642EPDNEW
RGD ID:6837997
Promoter ID:MM_KWN:44901
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000031651,   NM_028291
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv365148,241,616 - 148,242,647 (+)MPROMDB
RGD ID:6837995
Promoter ID:MM_KWN:44903
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Liver
Transcripts:ENSMUST00000110543
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv365148,313,871 - 148,314,371 (+)MPROMDB
RGD ID:6837998
Promoter ID:MM_KWN:44905
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain,   Lung
Transcripts:UC009AOG.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv365148,341,476 - 148,341,976 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1919837 AgrOrtholog
Ensembl Genes ENSMUSG00000029647 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000031651 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000134810 UniProtKB/TrEMBL
  ENSMUSP00000134911 UniProtKB/TrEMBL
  ENSMUSP00000134989 UniProtKB/TrEMBL
  ENSMUSP00000135367 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUSP00000135477 UniProtKB/TrEMBL
  ENSMUSP00000135673 UniProtKB/TrEMBL
  ENSMUSP00000135729 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUSP00000144495 UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000031651 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000175807 UniProtKB/TrEMBL
  ENSMUST00000176466 UniProtKB/TrEMBL
  ENSMUST00000176553 UniProtKB/TrEMBL
  ENSMUST00000176596 UniProtKB/TrEMBL
  ENSMUST00000176600 UniProtKB/TrEMBL
  ENSMUST00000176753 UniProtKB/TrEMBL
  ENSMUST00000177465 UniProtKB/TrEMBL
  ENSMUST00000200885 UniProtKB/TrEMBL
InterPro Kinase-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PAN3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Pan3_PK UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Prot_kinase_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_CCCH UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_CCCH_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:72587 UniProtKB/Swiss-Prot
MGD MGI:1919837 ENTREZGENE
NCBI Gene 72587 ENTREZGENE
PANTHER PTHR12272 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Pan3_PK UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Pan3 PhenoGen
PROSITE PROTEIN_KINASE_DOM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZF_C3H1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART S_TKc UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZnF_C3H1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF56112 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF90229 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0J9YV55_MOUSE UniProtKB/TrEMBL
  H3BJ17_MOUSE UniProtKB/TrEMBL
  H3BJA8_MOUSE UniProtKB/TrEMBL
  H3BJH6_MOUSE UniProtKB/TrEMBL
  H3BKF3 ENTREZGENE, UniProtKB/TrEMBL
  H3BKQ1_MOUSE UniProtKB/TrEMBL
  H3BL68_MOUSE UniProtKB/TrEMBL
  H3BLB9_MOUSE UniProtKB/TrEMBL
  PAN3_MOUSE UniProtKB/Swiss-Prot
  Q5U221_MOUSE UniProtKB/TrEMBL
  Q640Q5 ENTREZGENE
UniProt Secondary Q3U5F2 UniProtKB/Swiss-Prot
  Q8CE75 UniProtKB/Swiss-Prot
  Q9CZM6 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-02-29 Pan3  PAN3 poly(A) specific ribonuclease subunit    PAN3 polyA specific ribonuclease subunit homolog (S. cerevisiae)  Symbol and/or name change 5135510 APPROVED