Tmc5 (transmembrane channel-like gene family 5) - Rat Genome Database

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Gene: Tmc5 (transmembrane channel-like gene family 5) Mus musculus
Analyze
Symbol: Tmc5
Name: transmembrane channel-like gene family 5
RGD ID: 1315995
MGI Page MGI
Description: Predicted to enable mechanosensitive monoatomic ion channel activity. Predicted to act upstream of or within monoatomic ion transmembrane transport. Predicted to be located in plasma membrane. Is expressed in sensory organ and skeleton. Orthologous to human TMC5 (transmembrane channel like 5).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 4932443L08Rik; AU016085; MGC118178; transmembrane channel-like protein 5
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm397118,196,520 - 118,274,308 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl7118,196,520 - 118,274,309 (+)EnsemblGRCm39 Ensembl
GRCm387118,597,297 - 118,675,085 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl7118,597,297 - 118,675,086 (+)EnsemblGRCm38mm10GRCm38
MGSCv377125,740,811 - 125,818,599 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv367118,424,885 - 118,466,216 (+)NCBIMGSCv36mm8
Celera7118,524,641 - 118,608,852 (+)NCBICelera
Cytogenetic Map7F1- F2NCBI
cM Map763.44NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2. MGDs mouse GO annotations MGD data from the GO Consortium
3. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10349636   PMID:10725249   PMID:11042159   PMID:11076861   PMID:12477932   PMID:12812529   PMID:12819125   PMID:12906855   PMID:14610273   PMID:16141072   PMID:16141073   PMID:18799693  
PMID:21267068   PMID:21873635  


Genomics

Comparative Map Data
Tmc5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm397118,196,520 - 118,274,308 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl7118,196,520 - 118,274,309 (+)EnsemblGRCm39 Ensembl
GRCm387118,597,297 - 118,675,085 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl7118,597,297 - 118,675,086 (+)EnsemblGRCm38mm10GRCm38
MGSCv377125,740,811 - 125,818,599 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv367118,424,885 - 118,466,216 (+)NCBIMGSCv36mm8
Celera7118,524,641 - 118,608,852 (+)NCBICelera
Cytogenetic Map7F1- F2NCBI
cM Map763.44NCBI
TMC5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381619,410,539 - 19,499,113 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1619,410,496 - 19,499,113 (+)EnsemblGRCh38hg38GRCh38
GRCh371619,421,861 - 19,510,435 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361619,329,558 - 19,417,936 (+)NCBINCBI36Build 36hg18NCBI36
Build 341619,375,272 - 19,417,579NCBI
Celera1618,570,439 - 18,659,459 (+)NCBICelera
Cytogenetic Map16p12.3NCBI
HuRef1617,959,251 - 18,047,362 (+)NCBIHuRef
CHM1_11619,509,352 - 19,597,691 (+)NCBICHM1_1
T2T-CHM13v2.01619,341,776 - 19,429,985 (+)NCBIT2T-CHM13v2.0
Tmc5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81182,349,102 - 182,433,679 (+)NCBIGRCr8
mRatBN7.21172,914,915 - 172,999,478 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1172,914,457 - 172,999,474 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1181,233,837 - 181,312,043 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01188,419,941 - 188,498,142 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01181,149,959 - 181,228,411 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01188,288,738 - 188,337,310 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1188,278,469 - 188,337,308 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01195,234,862 - 195,283,331 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41176,854,487 - 176,865,156 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11176,993,732 - 177,007,689 (+)NCBI
Celera1170,724,112 - 170,766,605 (+)NCBICelera
Cytogenetic Map1q35NCBI
Tmc5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554423,110,479 - 3,186,364 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554423,106,993 - 3,186,364 (+)NCBIChiLan1.0ChiLan1.0
TMC5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21820,673,207 - 20,762,936 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11625,225,424 - 25,284,284 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01618,812,673 - 18,902,458 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11619,540,465 - 19,600,043 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1619,540,465 - 19,600,043 (+)Ensemblpanpan1.1panPan2
TMC5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1625,765,392 - 25,831,743 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl625,765,667 - 25,832,081 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha627,128,108 - 27,195,293 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0625,920,407 - 25,987,734 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl625,920,427 - 25,963,023 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1625,720,411 - 25,787,739 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0625,615,236 - 25,682,285 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0626,004,527 - 26,071,904 (-)NCBIUU_Cfam_GSD_1.0
Tmc5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344117,010,535 - 117,075,363 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365015,113,721 - 5,174,348 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365015,113,947 - 5,173,864 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TMC5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl326,210,077 - 26,279,720 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1326,211,425 - 26,287,147 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2326,928,301 - 27,069,948 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TMC5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1517,697,283 - 17,778,098 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl517,709,891 - 17,780,006 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606812,152,505 - 12,242,016 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tmc5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247822,764,730 - 2,836,098 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247822,764,748 - 2,836,234 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Tmc5
1858 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:550
Count of miRNA genes:173
Interacting mature miRNAs:186
Transcripts:ENSMUST00000057320, ENSMUST00000098088, ENSMUST00000121715, ENSMUST00000121744, ENSMUST00000155572
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
25314307Mlh1fc2_mMLH1 foci count 2 (mouse)76502999133501729Mouse
12792978Fbmd3_mfemoral bone mineral density 3, females only (mouse)77050288142367832Mouse
10412199Sst2_msusceptibility to tuberculosis 2 (mouse)Not determined718728794119485380Mouse
1301158Eae4_msusceptibility to experimental allergic encephalomyelitis 4 (mouse)Not determined719147398141919804Mouse
10043926Bw1n_mbody weight 1 in NSY (mouse)Not determined745161966118693530Mouse
13208555Lgth10_mbody length 10 (mouse)751649748125599172Mouse
27226751Femd5_mfemur midshaft diameter 5, 10 week (mouse)753249748143153737Mouse
27226778Femd11_mfemur midshaft diameter 11, 16 week (mouse)756949748134001729Mouse
26884408Bzwq13_mbi-zygomatic width QTL 13, 16 week (mouse)761749748121399223Mouse
27095916Scvln15_msacral vertebrae length 2, 16 week (mouse)761749748123699223Mouse
26884440Sklq4_mskull length QTL 4, 5 week (mouse)765249748126499172Mouse
27226715Metcl3_mmetatarsal-calcaneal length 3, 5 week (mouse)767849748119499223Mouse
26884444Sklq8_mskull length QTL 8, 10 week (mouse)767849748124199223Mouse
26884451Sklq14_mskull length QTL 14, 16 week (mouse)767849748124999172Mouse
27095907Scvln4_msacral vertebrae length 2, 5 week (mouse)769949748120499223Mouse
27095910Pglq13_mpelvic girdle length QTL 13, 16 week (mouse)773049748125699172Mouse
27095933Ulnl3_mulna length 3, 5 week (mouse)773149748143153737Mouse
27226745Metcl9_mmetatarsal-calcaneal length 9, 10 week (mouse)774849748122199223Mouse
27226781Tibl3_mtibia length 3, 5 week (mouse)774849748122199223Mouse
26884398Humsd6_mhumerus midshaft diameter 6, 16 week (mouse)778649748136901729Mouse
27095930Ulnl10_mulna length 10, 16 week (mouse)780849748126699172Mouse
27095923Pglq3_mpelvic girdle length QTL 3, 5 week (mouse)781249748124199223Mouse
27095903Scvln10_msacral vertebrae length 2, 10 week (mouse)781449748126499172Mouse
27226765Tibl18_mtibia length 18, 16 week (mouse)781849748126499172Mouse
27226763Feml20_mfemur length 20, 16 week (mouse)785049208124199223Mouse
1301647Elpt_melevated leptin (mouse)Not determined786500186120500329Mouse
1301188Heal6_mwound healing/regeneration 6 (mouse)Not determined787043932121044066Mouse
1302062Stheal6_msoft tissue heal 6 (mouse)Not determined787043932121044066Mouse
13463473Hbbcq4_mhemoglobin concentration QTL 4 (mouse)787043932121044066Mouse
1301781Capsq3_mcapsaicin sensitivity related QTL 3 (mouse)Not determined787143137119485380Mouse
27226769Tibl12_mtibia length 12, 10 week (mouse)787249208126499172Mouse
27226790Feml15_mfemur length 15, 10 week (mouse)787249208126499172Mouse
1357664Nba3_mNew Zealand Black autoimmunity 3 (mouse)Not determined791482996125483156Mouse
1301937Skull10_mskull morphology 10 (mouse)Not determined791482996125483156Mouse
1300528Ssial3_msusceptibility to sialadenitis 3 (mouse)Not determined793391848127392041Mouse
1301478Eae26_msusceptibility to experimental allergic encephalomyelitis 26 (mouse)Not determined798164922132165010Mouse
13524850Asrq7_macoustic startle response 7 (mouse)798394974132394974Mouse
10412104Tons2_mtongue size 2 (mouse)Not determined799837716133837716Mouse
11039524Tbbr3_mTrypanosoma brucei brucei response 3 (mouse)7100750722134750843Mouse
1301447Fembm3_mfemoral bone morphometry 3 (mouse)Not determined7100993261134993342Mouse
1357460Vtbt4_mvertebral trabecular bone trait 4 (mouse)Not determined7101693381135693530Mouse
1301105Cfld4_mcystic fibrosis lung disease 4 (mouse)Not determined7101693381135693530Mouse
1300721Cfbw3_mcystic fibrosis body weight 3 (mouse)Not determined7101693381135693530Mouse
4142312Nilac4_mnicotine induced locomotor activity 4 (mouse)Not determined7102485219136485380Mouse
5491192Mobq1_mmultigenic obesity QTL 1 (mouse)Not determined7105250663139250811Mouse
13524852Asrq7a_macoustic startle response 7a (mouse)7105350008139350008Mouse
4141056Lskcn2_mLSK cell number 2 (mouse)Not determined108482996118693530Mouse
14700684Civq1_mcerebral infarct volume QTL 1 (mouse)7109707335143707335Mouse
14700687Civq5_mcerebral infarct volume QTL 5 (mouse)7109707335143707335Mouse
14700688Civq6_mcerebral infarct volume QTL 6 (mouse)7109707335143707335Mouse
11059562Lmr21b_mleishmaniasis resistance 21b (mouse)7110967235144967336Mouse
10402499Lmr21_mleishmaniasis resistance 21 (mouse)Not determined7110967235144967336Mouse
1302032Alcp12_malcohol preference locus 12 (mouse)Not determined7111166122144995196Mouse
1301898Alcp14_malcohol preference locus 14 (mouse)Not determined7111166122144995196Mouse
1300670Sluc19_msusceptibility to lung cancer 19 (mouse)Not determined7111166122144995196Mouse
4142444Femwf5_mfemur work to failure 5 (mouse)Not determined112552248144995196Mouse
1300747Skts2_mskin tumor susceptibility 2 (mouse)Not determined7112922733144995196Mouse
38501072Stsl7_mSalmonella typhimurium susceptibility locus 7 (mouse)7115699235128501724Mouse
1300677Bmd9_mbone mineral density 9 (mouse)Not determined7116634089144995196Mouse
15092059Wogrme1_mweek one growth rate, maternal effect 1 (mouse)7117199227134101729Mouse
11059561Lmr21a_mleishmaniasis resistance 21a (mouse)7117750722127967336Mouse


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000057320   ⟹   ENSMUSP00000049784
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7118,232,959 - 118,274,309 (+)Ensembl
GRCm38.p6 Ensembl7118,633,736 - 118,675,086 (+)Ensembl
RefSeq Acc Id: ENSMUST00000098088   ⟹   ENSMUSP00000095694
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7118,196,520 - 118,274,308 (+)Ensembl
GRCm38.p6 Ensembl7118,597,297 - 118,675,085 (+)Ensembl
RefSeq Acc Id: ENSMUST00000121715   ⟹   ENSMUSP00000112434
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7118,196,520 - 118,274,309 (+)Ensembl
GRCm38.p6 Ensembl7118,597,297 - 118,675,086 (+)Ensembl
RefSeq Acc Id: ENSMUST00000121744   ⟹   ENSMUSP00000114137
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7118,199,393 - 118,274,301 (+)Ensembl
GRCm38.p6 Ensembl7118,600,170 - 118,675,078 (+)Ensembl
RefSeq Acc Id: ENSMUST00000155572   ⟹   ENSMUSP00000118541
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7118,221,737 - 118,222,692 (+)Ensembl
GRCm38.p6 Ensembl7118,622,514 - 118,623,469 (+)Ensembl
RefSeq Acc Id: NM_001105252   ⟹   NP_001098722
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397118,196,520 - 118,274,308 (+)NCBI
GRCm387118,597,297 - 118,675,085 (+)NCBI
MGSCv377125,740,811 - 125,818,599 (+)RGD
Celera7118,524,641 - 118,608,852 (+)RGD
cM Map7 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_028930   ⟹   NP_083206
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397118,232,959 - 118,274,308 (+)NCBI
GRCm387118,633,736 - 118,675,085 (+)NCBI
MGSCv377125,740,811 - 125,818,599 (+)RGD
Celera7118,524,641 - 118,608,852 (+)RGD
cM Map7 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006508253   ⟹   XP_006508316
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397118,198,753 - 118,274,131 (+)NCBI
GRCm387118,599,530 - 118,674,908 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011241924   ⟹   XP_011240226
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397118,196,522 - 118,274,301 (+)NCBI
GRCm387118,597,299 - 118,675,078 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030243039   ⟹   XP_030098899
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397118,222,750 - 118,274,131 (+)NCBI
GRCm387118,623,527 - 118,674,908 (+)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_083206   ⟸   NM_028930
- Peptide Label: isoform b
- UniProtKB: Q32NZ6 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001098722   ⟸   NM_001105252
- Peptide Label: isoform a
- UniProtKB: Q80VR0 (UniProtKB/Swiss-Prot),   Q7TN61 (UniProtKB/Swiss-Prot),   Q9D4F1 (UniProtKB/Swiss-Prot),   Q32NZ6 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006508316   ⟸   XM_006508253
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_011240226   ⟸   XM_011241924
- Peptide Label: isoform X1
- UniProtKB: Q80VR0 (UniProtKB/Swiss-Prot),   Q7TN61 (UniProtKB/Swiss-Prot),   Q9D4F1 (UniProtKB/Swiss-Prot),   Q32NZ6 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_030098899   ⟸   XM_030243039
- Peptide Label: isoform X3
RefSeq Acc Id: ENSMUSP00000095694   ⟸   ENSMUST00000098088
RefSeq Acc Id: ENSMUSP00000118541   ⟸   ENSMUST00000155572
RefSeq Acc Id: ENSMUSP00000049784   ⟸   ENSMUST00000057320
RefSeq Acc Id: ENSMUSP00000114137   ⟸   ENSMUST00000121744
RefSeq Acc Id: ENSMUSP00000112434   ⟸   ENSMUST00000121715

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q32NZ6-F1-model_v2 AlphaFold Q32NZ6 1-967 view protein structure

Promoters
RGD ID:8665353
Promoter ID:EPDNEW_M10708
Type:initiation region
Name:Tmc5_2
Description:Mus musculus transmembrane channel-like gene family 5 , transcriptvariant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M10709  EPDNEW_M10710  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm387118,597,331 - 118,597,391EPDNEW
RGD ID:8665355
Promoter ID:EPDNEW_M10709
Type:initiation region
Name:Tmc5_1
Description:Mus musculus transmembrane channel-like gene family 5 , transcriptvariant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M10708  EPDNEW_M10710  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm387118,600,246 - 118,600,306EPDNEW
RGD ID:8665357
Promoter ID:EPDNEW_M10710
Type:initiation region
Name:Tmc5_3
Description:Mus musculus transmembrane channel-like gene family 5 , transcriptvariant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M10708  EPDNEW_M10709  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm387118,633,760 - 118,633,820EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1921674 AgrOrtholog
Ensembl Genes ENSMUSG00000030650 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000057320 ENTREZGENE
  ENSMUST00000057320.8 UniProtKB/Swiss-Prot
  ENSMUST00000098088 ENTREZGENE
  ENSMUST00000098088.11 UniProtKB/Swiss-Prot
  ENSMUST00000121715.8 UniProtKB/Swiss-Prot
  ENSMUST00000121744.9 UniProtKB/Swiss-Prot
  ENSMUST00000155572.2 UniProtKB/TrEMBL
InterPro TMC UniProtKB/Swiss-Prot
  TMC_dom UniProtKB/Swiss-Prot
KEGG Report mmu:74424 UniProtKB/Swiss-Prot
MGD MGI:1921674 ENTREZGENE
NCBI Gene 74424 ENTREZGENE
PANTHER PTHR23302 UniProtKB/Swiss-Prot
  TRANSMEMBRANE CHANNEL-LIKE PROTEIN 5 UniProtKB/Swiss-Prot
Pfam TMC UniProtKB/Swiss-Prot
PhenoGen Tmc5 PhenoGen
UniProt D3Z0S8_MOUSE UniProtKB/TrEMBL
  Q32NZ6 ENTREZGENE
  Q7TN61 ENTREZGENE
  Q80VR0 ENTREZGENE
  Q9D4F1 ENTREZGENE
  TMC5_MOUSE UniProtKB/Swiss-Prot
UniProt Secondary Q7TN61 UniProtKB/Swiss-Prot
  Q80VR0 UniProtKB/Swiss-Prot
  Q9D4F1 UniProtKB/Swiss-Prot