Rhot1 (ras homolog family member T1) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Rhot1 (ras homolog family member T1) Mus musculus
Analyze
Symbol: Rhot1
Name: ras homolog family member T1
RGD ID: 1315970
MGI Page MGI
Description: Predicted to have GTP binding activity and GTPase activity. Predicted to be involved in several processes, including establishment of mitochondrion localization, microtubule-mediated; mitochondrial outer membrane permeabilization; and regulation of organelle transport along microtubule. Localizes to mitochondrion. Is expressed in brain. Used to study motor neuron disease. Orthologous to human RHOT1 (ras homolog family member T1); PARTICIPATES IN mitochondria transport pathway; INTERACTS WITH 1,2-dimethylhydrazine; 2,3',4,4',5-Pentachlorobiphenyl; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: 2210403N23Rik; AA415293; AF244542; AI834919; Arh; Arht1; C430039G08Rik; FLJ11040; Mi; MIRO-1; Miro1; mitochondrial Rho GTPase 1; ras homolog gene family, member T1
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391180,099,844 - 80,158,733 (+)NCBIGRCm39mm39
GRCm39 Ensembl1180,099,845 - 80,158,733 (+)Ensembl
GRCm381180,208,610 - 80,267,907 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1180,209,019 - 80,267,907 (+)EnsemblGRCm38mm10GRCm38
MGSCv371180,022,557 - 80,081,409 (+)NCBIGRCm37mm9NCBIm37
MGSCv361180,025,279 - 80,083,681 (+)NCBImm8
Celera1189,845,510 - 89,904,362 (+)NCBICelera
Cytogenetic Map11B5NCBI
cM Map1147.62NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Molecular Pathway Annotations     Click to see Annotation Detail View
References

Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:12477932   PMID:12520002   PMID:12696059   PMID:14610273   PMID:15489334   PMID:15782199   PMID:16141072  
PMID:16141073   PMID:18614015   PMID:18799693   PMID:21267068   PMID:21677750   PMID:21873635   PMID:22569362   PMID:24431222   PMID:24457600   PMID:25136135   PMID:26074815   PMID:26631479  
PMID:27705781   PMID:28185240   PMID:28378742   PMID:28615318   PMID:29311115   PMID:29364559   PMID:29599132   PMID:29686046   PMID:29694881   PMID:30856164   PMID:31068376   PMID:31562315  
PMID:32325033   PMID:33155636  


Genomics

Comparative Map Data
Rhot1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391180,099,844 - 80,158,733 (+)NCBIGRCm39mm39
GRCm39 Ensembl1180,099,845 - 80,158,733 (+)Ensembl
GRCm381180,208,610 - 80,267,907 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1180,209,019 - 80,267,907 (+)EnsemblGRCm38mm10GRCm38
MGSCv371180,022,557 - 80,081,409 (+)NCBIGRCm37mm9NCBIm37
MGSCv361180,025,279 - 80,083,681 (+)NCBImm8
Celera1189,845,510 - 89,904,362 (+)NCBICelera
Cytogenetic Map11B5NCBI
cM Map1147.62NCBI
RHOT1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1732,142,454 - 32,253,374 (+)EnsemblGRCh38hg38GRCh38
GRCh381732,142,502 - 32,253,374 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh371730,469,521 - 30,552,746 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361727,493,586 - 27,576,859 (+)NCBINCBI36hg18NCBI36
Build 341727,493,761 - 27,560,869NCBI
Celera1727,380,006 - 27,463,684 (+)NCBI
Cytogenetic Map17q11.2NCBI
HuRef1726,657,489 - 26,740,675 (+)NCBIHuRef
CHM1_11730,531,938 - 30,615,276 (+)NCBICHM1_1
Rhot1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21065,198,700 - 65,262,807 (+)NCBI
Rnor_6.0 Ensembl1067,532,030 - 67,640,555 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01067,559,277 - 67,640,622 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01067,216,636 - 67,297,347 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41068,423,410 - 68,488,313 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11068,437,002 - 68,502,001 (+)NCBI
Celera1064,160,374 - 64,223,357 (+)NCBICelera
Cytogenetic Map10q25-q26NCBI
Rhot1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554817,149,241 - 7,199,296 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554817,149,836 - 7,199,296 (+)NCBIChiLan1.0ChiLan1.0
RHOT1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11724,837,093 - 24,917,304 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1724,837,093 - 24,917,310 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01724,523,047 - 24,633,559 (-)NCBIMhudiblu_PPA_v0panPan3
RHOT1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1940,715,713 - 40,779,551 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl940,715,941 - 40,779,400 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha939,874,695 - 39,938,319 (-)NCBI
ROS_Cfam_1.0941,532,523 - 41,596,217 (-)NCBI
UMICH_Zoey_3.1940,318,018 - 40,381,819 (-)NCBI
UNSW_CanFamBas_1.0940,612,413 - 40,676,074 (-)NCBI
UU_Cfam_GSD_1.0940,687,227 - 40,750,891 (-)NCBI
Rhot1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560239,780,322 - 39,847,949 (-)NCBI
SpeTri2.0NW_0049365382,658,225 - 2,725,889 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RHOT1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1242,711,231 - 42,783,421 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11242,711,231 - 42,783,471 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21244,443,398 - 44,515,571 (+)NCBISscrofa10.2Sscrofa10.2susScr3
RHOT1
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11625,720,640 - 25,798,954 (+)NCBI
ChlSab1.1 Ensembl1625,750,224 - 25,799,286 (+)Ensembl
Rhot1
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624875242,550 - 311,871 (+)NCBI

Position Markers
14.MMHAP56FRE8.seq  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381180,225,113 - 80,225,297UniSTSGRCm38
MGSCv371180,038,615 - 80,038,799UniSTSGRCm37
Celera1189,861,568 - 89,861,752UniSTS
Cytogenetic Map11B5UniSTS
cM Map1147.26UniSTS
Whitehead_YAC11 UniSTS
RH124268  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381180,266,505 - 80,266,618UniSTSGRCm38
MGSCv371180,080,007 - 80,080,120UniSTSGRCm37
Celera1189,902,960 - 89,903,073UniSTS
Cytogenetic Map11B5UniSTS
cM Map1147.26UniSTS
UniSTS:236666  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381180,237,372 - 80,237,586UniSTSGRCm38
MGSCv371180,050,874 - 80,051,088UniSTSGRCm37
Celera1189,873,827 - 89,874,041UniSTS
Cytogenetic Map11B5UniSTS
cM Map1147.26UniSTS
AI834919  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381180,267,059 - 80,267,178UniSTSGRCm38
MGSCv371180,080,561 - 80,080,680UniSTSGRCm37
Celera1189,903,514 - 89,903,633UniSTS
Cytogenetic Map11B5UniSTS
cM Map1147.26UniSTS
Whitehead/MRC_RH111023.24UniSTS
D11Bhm114  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381180,254,476 - 80,254,566UniSTSGRCm38
MGSCv371180,067,978 - 80,068,068UniSTSGRCm37
Celera1189,890,931 - 89,891,021UniSTS
Cytogenetic Map11B5UniSTS
cM Map1146.26UniSTS
D11Bhm115  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381180,254,440 - 80,254,526UniSTSGRCm38
MGSCv371180,067,942 - 80,068,028UniSTSGRCm37
Celera1189,890,895 - 89,890,981UniSTS
Cytogenetic Map11B5UniSTS
cM Map1146.28UniSTS
D11Bhm116  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381180,255,074 - 80,255,144UniSTSGRCm38
MGSCv371180,068,576 - 80,068,646UniSTSGRCm37
Celera1189,891,529 - 89,891,599UniSTS
Cytogenetic Map11B5UniSTS
cM Map1146.3UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
13208559Wght10_mweight 10 (mouse)11400000089000000Mouse
13208558Lgth12_mbody length 12 (mouse)11400000095000000Mouse
1300905Scc6_mcolon tumor susceptibility 6 (mouse)Not determined11693027789128908Mouse
1357859Lvrq7_mliver weight QTL 7 (mouse)Not determined1112318637118131898Mouse
39128214Lwq20_mliver weight QTL 20 (mouse)1112318637118131898Mouse
4141894Nidd6k_mNidd6 on KK-A (mouse)Not determined1917420497007000Mouse
10412246Dfs2_mdental fluorosis suseptibility 2 (mouse)Not determined112185736495990405Mouse
13208569Bmiq10_mbody mass index QTL 10 (mouse)113600000085000000Mouse
1301328Mol4_mmodifier of LPS-response 4 (mouse)Not determined113639175083590530Mouse
4141367Inf1_macute ozone induced inflammation (mouse)Not determined44739211113167183Mouse
1357878Mastr_mmodifier of astrocytoma (mouse)Not determined114581775489927907Mouse
1300765Bbaa4_mB.burgdorferi-associated arthritis 4 (mouse)Not determined114629434180294436Mouse
1301988Bmd11_mbone mineral density 11 (mouse)Not determined114642858180428696Mouse
1301830Ssta4_msusceptibility to Salmonella typhimurium antigens 4 (mouse)Not determined115018736584187585Mouse
13524840Ppiq9a_mprepulse inhibition QTL 9a (mouse)115260355986603559Mouse
1300774Pgia7_mproteoglycan induced arthritis 7 (mouse)Not determined115349976287499911Mouse
4141830Pregq1_mpregnancy QTL 1 (mouse)Not determined115423592683842826Mouse
4142121Tmc1m2_mTmc1 modifier 2 (mouse)Not determined1156973201114267131Mouse
1300664Etohcta9_methanol conditioned taste aversion 9 (mouse)Not determined115786383491863932Mouse
1300924Ity2_mimmunity to S. typhimurium 2 (mouse)Not determined15861720487804412Mouse
4141982Skts-fp2_mskin tumor susceptibility in FVB and PWK 2 (mouse)Not determined5882844085175703Mouse
1301987Pid3_mprior incubation determinant 3 (mouse)Not determined116179599488808902Mouse
1301319Dautb4_mdopamine uptake transporter binding 4 (mouse)Not determined116226517996265327Mouse
27226730Tibmd1_mtibia midshaft diameter 1, 5 week (mouse)1162700000109500000Mouse
1301999Lmr15_mleishmaniasis resistance 15 (mouse)Not determined116342858181939647Mouse
10044004Stzid3_mstreptozotocin induced diabetes susceptibility 3 (mouse)Not determined116342858194173092Mouse
11039501Ltpr6a_mLeishmania tropica response 6a (mouse)116493951098939647Mouse
11039502Ltpr6b_mLeishmania tropica response 6b (mouse)116493951098939647Mouse
11039515Ltpr6_mLeishmania tropica response 6 (mouse)116493951098939647Mouse
1301546Pcir2_mperiosteal circumference 2 (mouse)Not determined1166842594100842826Mouse
1357766Si5lq6_mserum IGFBP-5 level QTL 6 (mouse)Not determined1166842594100842826Mouse
4141012Femwf6_mfemur work to failure 6 (mouse)Not determined66842594100842826Mouse
1301833Tbbmd5_mtotal body bone mineral density 5 (mouse)Not determined1166842594100842826Mouse
1300784Prdt3_mprion disease incubation time 3 (mouse)Not determined1166842594100842826Mouse
1300628Lgth6_mbody length 6 (mouse)Not determined1166842594100842826Mouse
27226783Tibl5_mtibia length 5, 5 week (mouse)1168300000102000000Mouse
1300651Pcyts3_mplasmacytoma susceptibility 3 (mouse)Not determined1170800372104800540Mouse
1301681Sle13_msystematic lupus erythematosus susceptibility 13 (mouse)Not determined1170800372104800540Mouse
1558812Rafar_mretinoic acid induced forelimb autopod reduction (mouse)Not determined1170800372104800540Mouse
4141339Nilac2_mnicotine induced locomotor activity 2 (mouse)Not determined1170800372104800540Mouse
1301404Sbmd4_mspinal bone mineral density 4 (mouse)Not determined1172128823106128908Mouse
1301078Alcp2_malcohol preference locus 2 (mouse)Not determined117231897084840636Mouse
1301310Tmevd5_mTheiler's murine encephalomyelitis virus induced demyelinating disease susceptibility 5 (mouse)Not determined1172835299106835463Mouse
4142348Pstc2_mperiosteal circumference 2 (mouse)Not determined1172927789106927907Mouse
10043866Adip19_madiposity 19 (mouse)Not determined1172927789106927907Mouse
12903994Opfaq3_mopen field activity QTL 3 (mouse)117384671582178599Mouse
11038695Par8_mpulmonary adenoma resistance 8 (mouse)1177172953111173092Mouse
1301414Heal10_mwound healing/regeneration 10 (mouse)Not determined1177546357111546496Mouse
10045616Heal25_mwound healing/regeneration 25 (mouse)Not determined1177546357111546496Mouse
4141365Ltxs3_mlethal factor toxin susceptibility 3 (mouse)Not determined117768304780855532Mouse
1302124Eae7_msusceptibility to experimental allergic encephalomyelitis 7 (mouse)Not determined117768304799486994Mouse
10413882Moe1_mmodifier of epilepsy 1 (mouse)1177880152111880273Mouse
1301640Lore4_mloss of righting induced by ethanol 4 (mouse)Not determined1179265183107725646Mouse
14746970Manh71_mmandible shape 71 (mouse)1179525431113525431Mouse
10043865T2dm5sa_mtype 2 diabetes mellitus 5 in SMXA RI mice (mouse)Not determined1179922933104611872Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:2566
Count of miRNA genes:625
Interacting mature miRNAs:756
Transcripts:ENSMUST00000017831, ENSMUST00000055056, ENSMUST00000077451, ENSMUST00000092857, ENSMUST00000134148, ENSMUST00000134894, ENSMUST00000135947, ENSMUST00000151518, ENSMUST00000154362
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001163354 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001163355 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001362868 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001362869 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001362870 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_021536 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006533886 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011249167 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_003949484 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_879726 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AF244542 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK019059 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK021245 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK028597 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK031139 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK032096 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK041119 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK043323 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK053263 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK054472 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK078955 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK090071 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK138830 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK141621 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK147749 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK147801 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK167502 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK169811 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK191854 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK194099 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL591426 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY974596 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC006918 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC025021 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC044301 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC046785 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC052882 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC055823 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC058350 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466556 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000017831   ⟹   ENSMUSP00000017831
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1180,209,119 - 80,266,767 (+)Ensembl
RefSeq Acc Id: ENSMUST00000055056   ⟹   ENSMUSP00000057669
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1180,209,055 - 80,267,907 (+)Ensembl
RefSeq Acc Id: ENSMUST00000077451   ⟹   ENSMUSP00000076664
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1180,209,019 - 80,266,812 (+)Ensembl
RefSeq Acc Id: ENSMUST00000092857   ⟹   ENSMUSP00000090533
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1180,209,084 - 80,267,486 (+)Ensembl
RefSeq Acc Id: ENSMUST00000134148
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1180,209,147 - 80,246,403 (+)Ensembl
RefSeq Acc Id: ENSMUST00000134894   ⟹   ENSMUSP00000117941
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1180,242,611 - 80,266,744 (+)Ensembl
RefSeq Acc Id: ENSMUST00000135947
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1180,249,674 - 80,266,738 (+)Ensembl
RefSeq Acc Id: ENSMUST00000151518
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1180,252,497 - 80,254,828 (+)Ensembl
RefSeq Acc Id: ENSMUST00000154362
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1180,209,113 - 80,252,037 (+)Ensembl
RefSeq Acc Id: ENSMUST00000236882
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1180,264,051 - 80,266,751 (+)Ensembl
RefSeq Acc Id: ENSMUST00000237515   ⟹   ENSMUSP00000158504
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1180,254,701 - 80,266,041 (+)Ensembl
RefSeq Acc Id: NM_001163354   ⟹   NP_001156826
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391180,099,877 - 80,158,733 (+)NCBI
GRCm381180,209,051 - 80,267,907 (+)NCBI
MGSCv371180,022,557 - 80,081,409 (+)RGD
Celera1189,845,510 - 89,904,362 (+)RGD
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001163355   ⟹   NP_001156827
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391180,099,877 - 80,158,733 (+)NCBI
GRCm381180,209,051 - 80,267,907 (+)NCBI
MGSCv371180,022,557 - 80,081,409 (+)RGD
Celera1189,845,510 - 89,904,362 (+)RGD
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001362868   ⟹   NP_001349797
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391180,099,877 - 80,158,733 (+)NCBI
GRCm381180,209,051 - 80,267,907 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001362869   ⟹   NP_001349798
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391180,099,877 - 80,158,733 (+)NCBI
GRCm381180,209,051 - 80,267,907 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001362870   ⟹   NP_001349799
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391180,099,877 - 80,158,733 (+)NCBI
GRCm381180,209,051 - 80,267,907 (+)NCBI
Sequence:
RefSeq Acc Id: NM_021536   ⟹   NP_067511
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391180,099,877 - 80,158,733 (+)NCBI
GRCm381180,209,051 - 80,267,907 (+)NCBI
MGSCv371180,022,557 - 80,081,409 (+)RGD
Celera1189,845,510 - 89,904,362 (+)RGD
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006533886   ⟹   XP_006533949
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391180,099,844 - 80,158,320 (+)NCBI
GRCm381180,208,610 - 80,267,494 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011249167   ⟹   XP_011247469
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391180,099,844 - 80,158,320 (+)NCBI
GRCm381180,208,610 - 80,267,494 (+)NCBI
Sequence:
RefSeq Acc Id: XR_003949484
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391180,099,844 - 80,158,320 (+)NCBI
GRCm381180,208,610 - 80,267,494 (+)NCBI
Sequence:
RefSeq Acc Id: XR_879726
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391180,099,844 - 80,158,320 (+)NCBI
GRCm381180,208,610 - 80,265,821 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001156826 (Get FASTA)   NCBI Sequence Viewer  
  NP_001156827 (Get FASTA)   NCBI Sequence Viewer  
  NP_001349797 (Get FASTA)   NCBI Sequence Viewer  
  NP_001349798 (Get FASTA)   NCBI Sequence Viewer  
  NP_001349799 (Get FASTA)   NCBI Sequence Viewer  
  NP_067511 (Get FASTA)   NCBI Sequence Viewer  
  XP_006533949 (Get FASTA)   NCBI Sequence Viewer  
  XP_011247469 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAF64187 (Get FASTA)   NCBI Sequence Viewer  
  AAH06918 (Get FASTA)   NCBI Sequence Viewer  
  AAH46785 (Get FASTA)   NCBI Sequence Viewer  
  AAH52882 (Get FASTA)   NCBI Sequence Viewer  
  AAH58350 (Get FASTA)   NCBI Sequence Viewer  
  BAB31529 (Get FASTA)   NCBI Sequence Viewer  
  BAC26025 (Get FASTA)   NCBI Sequence Viewer  
  BAC27274 (Get FASTA)   NCBI Sequence Viewer  
  BAC30828 (Get FASTA)   NCBI Sequence Viewer  
  BAC35792 (Get FASTA)   NCBI Sequence Viewer  
  BAC37478 (Get FASTA)   NCBI Sequence Viewer  
  BAE23792 (Get FASTA)   NCBI Sequence Viewer  
  BAE24771 (Get FASTA)   NCBI Sequence Viewer  
  BAE28113 (Get FASTA)   NCBI Sequence Viewer  
  BAE28148 (Get FASTA)   NCBI Sequence Viewer  
  BAE39578 (Get FASTA)   NCBI Sequence Viewer  
  EDL15630 (Get FASTA)   NCBI Sequence Viewer  
  EDL15631 (Get FASTA)   NCBI Sequence Viewer  
  EDL15632 (Get FASTA)   NCBI Sequence Viewer  
  Q8BG51 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_067511   ⟸   NM_021536
- Peptide Label: isoform 1
- UniProtKB: Q8BG51 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001156826   ⟸   NM_001163354
- Peptide Label: isoform 2
- UniProtKB: Q8BG51 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001156827   ⟸   NM_001163355
- Peptide Label: isoform 3
- UniProtKB: Q8BG51 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006533949   ⟸   XM_006533886
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_011247469   ⟸   XM_011249167
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: NP_001349797   ⟸   NM_001362868
- Peptide Label: isoform 4
RefSeq Acc Id: NP_001349799   ⟸   NM_001362870
- Peptide Label: isoform 6
RefSeq Acc Id: NP_001349798   ⟸   NM_001362869
- Peptide Label: isoform 5
RefSeq Acc Id: ENSMUSP00000158504   ⟸   ENSMUST00000237515
RefSeq Acc Id: ENSMUSP00000090533   ⟸   ENSMUST00000092857
RefSeq Acc Id: ENSMUSP00000017831   ⟸   ENSMUST00000017831
RefSeq Acc Id: ENSMUSP00000117941   ⟸   ENSMUST00000134894
RefSeq Acc Id: ENSMUSP00000057669   ⟸   ENSMUST00000055056
RefSeq Acc Id: ENSMUSP00000076664   ⟸   ENSMUST00000077451
Protein Domains
EF-hand   Miro

Promoters
RGD ID:6821737
Promoter ID:MM_KWN:8799
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4
Transcripts:NM_001163354,   NM_001163355,   NM_021536,   OTTMUST00000000643,   OTTMUST00000000648,   OTTMUST00000000649,   UC007KLR.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361180,022,449 - 80,022,949 (+)MPROMDB
RGD ID:8675792
Promoter ID:EPDNEW_M15927
Type:initiation region
Name:Rhot1_1
Description:Mus musculus ras homolog family member T1 , transcript variant3, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381180,209,113 - 80,209,173EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1926078 AgrOrtholog
Ensembl Genes ENSMUSG00000017686 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000017831 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000057669 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000076664 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000090533 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000117941 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUSP00000158504 UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000017831 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000055056 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000077451 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000092857 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000134894 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUST00000237515 UniProtKB/TrEMBL
InterPro EF-hand-dom_pair UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  EF_Hand_1_Ca_BS UniProtKB/Swiss-Prot
  EF_hand_assoc_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  EF_hand_assoc_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  EF_hand_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Miro UniProtKB/Swiss-Prot
  Miro-1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  MIRO_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Small_GTP-bd_dom UniProtKB/Swiss-Prot
  Small_GTPase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:59040 UniProtKB/Swiss-Prot
MGD MGI:1926078 ENTREZGENE
NCBI Gene 59040 ENTREZGENE
PANTHER PTHR24072:SF124 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam EF_assoc_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  EF_assoc_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ras UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Rhot1 PhenoGen
PIRSF Mt_Rho_GTPase UniProtKB/Swiss-Prot
PROSITE EF_HAND_1 UniProtKB/Swiss-Prot
  EF_HAND_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  MIRO UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF47473 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF52540 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
TIGRFAMs small_GTP UniProtKB/Swiss-Prot
UniProt A0A494BBK2_MOUSE UniProtKB/TrEMBL
  F7ASU3_MOUSE UniProtKB/TrEMBL
  MIRO1_MOUSE UniProtKB/Swiss-Prot
  Q7TPW0_MOUSE UniProtKB/TrEMBL
  Q8BG51 ENTREZGENE
UniProt Secondary Q3TJB7 UniProtKB/Swiss-Prot
  Q3UGU4 UniProtKB/Swiss-Prot
  Q5SYC3 UniProtKB/Swiss-Prot
  Q5SYC6 UniProtKB/Swiss-Prot
  Q8BLW3 UniProtKB/Swiss-Prot
  Q8BMH1 UniProtKB/Swiss-Prot
  Q922N0 UniProtKB/Swiss-Prot
  Q9D2R1 UniProtKB/Swiss-Prot
  Q9JKB9 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-02-29 Rhot1  ras homolog family member T1    ras homolog gene family, member T1  Symbol and/or name change 5135510 APPROVED