Jade1 (jade family PHD finger 1) - Rat Genome Database

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Gene: Jade1 (jade family PHD finger 1) Mus musculus
Analyze
Symbol: Jade1
Name: jade family PHD finger 1
RGD ID: 1315810
MGI Page MGI
Description: Predicted to enable transcription coactivator activity. Predicted to contribute to histone acetyltransferase activity. Predicted to be involved in several processes, including negative regulation of canonical Wnt signaling pathway; regulation of cell growth; and regulation of nucleobase-containing compound metabolic process. Predicted to act upstream of or within negative regulation of G1/S transition of mitotic cell cycle. Predicted to be located in several cellular components, including cytosol; microtubule organizing center; and nuclear speck. Predicted to be part of histone acetyltransferase complex. Is expressed in several structures, including early conceptus; embryo ectoderm; genitourinary system; head somite; and primitive streak. Orthologous to human JADE1 (jade family PHD finger 1).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: AU041499; D530048A03Rik; jade family PHD finger protein 1; Jade1 PHD finger protein; mKIAA1807; PHD finger protein 17; Phf1; Phf17; protein Jade-1
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39341,510,169 - 41,571,299 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl341,510,166 - 41,571,299 (+)EnsemblGRCm39 Ensembl
GRCm38341,555,734 - 41,616,864 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl341,555,731 - 41,616,864 (+)EnsemblGRCm38mm10GRCm38
MGSCv37341,359,656 - 41,420,786 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36341,677,744 - 41,713,406 (+)NCBIMGSCv36mm8
Celera341,278,427 - 41,339,323 (+)NCBICelera
Cytogenetic Map3BNCBI
cM Map319.88NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-schisandrin B  (ISO)
1,2-dimethylhydrazine  (EXP)
17alpha-ethynylestradiol  (EXP,ISO)
17beta-estradiol  (EXP,ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2-methoxyethanol  (ISO)
2-methylcholine  (ISO)
3,4-methylenedioxymethamphetamine  (EXP)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4,4'-diaminodiphenylmethane  (EXP)
6-propyl-2-thiouracil  (ISO)
acetamide  (ISO)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
amitrole  (ISO)
amphetamine  (ISO)
aristolochic acid A  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (ISO)
atrazine  (ISO)
benzo[a]pyrene  (EXP,ISO)
benzo[a]pyrene diol epoxide I  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
butanal  (ISO)
cadmium atom  (EXP,ISO)
cadmium dichloride  (ISO)
carbon nanotube  (EXP)
CGP 52608  (ISO)
chlorpyrifos  (EXP)
cisplatin  (ISO)
cobalt dichloride  (EXP)
copper(II) sulfate  (ISO)
crocidolite asbestos  (EXP)
cyclosporin A  (EXP,ISO)
decabromodiphenyl ether  (ISO)
dexamethasone  (ISO)
dorsomorphin  (ISO)
epoxiconazole  (EXP)
ethanol  (EXP)
flutamide  (ISO)
folic acid  (EXP)
formaldehyde  (ISO)
FR900359  (ISO)
gentamycin  (ISO)
hydrogen peroxide  (ISO)
indometacin  (ISO)
methapyrilene  (ISO)
methimazole  (ISO)
methylmercury chloride  (ISO)
microcystin-LR  (ISO)
N-methyl-4-phenylpyridinium  (ISO)
nefazodone  (ISO)
nickel atom  (ISO)
ozone  (EXP)
p-chloromercuribenzoic acid  (ISO)
paracetamol  (EXP,ISO)
parathion  (EXP)
phenobarbital  (EXP)
phenylmercury acetate  (ISO)
pirinixic acid  (EXP)
progesterone  (ISO)
resveratrol  (ISO)
rotenone  (ISO)
SB 431542  (ISO)
silicon dioxide  (EXP)
silver atom  (EXP)
silver(0)  (EXP)
sodium arsenate  (EXP)
succimer  (EXP)
sulfadimethoxine  (ISO)
testosterone  (EXP,ISO)
tetrachloromethane  (EXP,ISO)
tetraphene  (EXP)
theophylline  (ISO)
thioacetamide  (ISO)
titanium dioxide  (EXP)
trichloroethene  (ISO)
trichostatin A  (ISO)
triphenyl phosphate  (ISO)
triptonide  (EXP)
troglitazone  (EXP)
trovafloxacin  (EXP)
valproic acid  (ISO)

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2. Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Ko MS, etal., Development 2000 Apr;127(8):1737-49.
3. MGD IEA MGD IEA
4. Prediction of the coding sequences of mouse homologues of KIAA gene: III. the complete nucleotide sequences of 500 mouse KIAA-homologous cDNAs identified by screening of terminal sequences of cDNA clones randomly sampled from size-fractionated libraries. Okazaki N, etal., DNA Res 2003 Aug 31;10(4):167-80.
5. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
6. Mouse MP Annotation Import Pipeline RGD automated import pipeline
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11544199   PMID:12169691   PMID:12477932   PMID:12520002   PMID:12904583   PMID:14610273   PMID:14612400  
PMID:15142957   PMID:15489334   PMID:15618518   PMID:15741177   PMID:15782199   PMID:16141072   PMID:16141073   PMID:17967808   PMID:18287559   PMID:18799693   PMID:20059953   PMID:20211142  
PMID:20362542   PMID:20412781   PMID:21677750   PMID:21873635   PMID:23001567   PMID:24097061   PMID:24739512   PMID:26919559   PMID:32325033   PMID:35483741   PMID:38171233  


Genomics

Comparative Map Data
Jade1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39341,510,169 - 41,571,299 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl341,510,166 - 41,571,299 (+)EnsemblGRCm39 Ensembl
GRCm38341,555,734 - 41,616,864 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl341,555,731 - 41,616,864 (+)EnsemblGRCm38mm10GRCm38
MGSCv37341,359,656 - 41,420,786 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36341,677,744 - 41,713,406 (+)NCBIMGSCv36mm8
Celera341,278,427 - 41,339,323 (+)NCBICelera
Cytogenetic Map3BNCBI
cM Map319.88NCBI
JADE1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh384128,809,700 - 128,875,224 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl4128,809,700 - 128,875,224 (+)EnsemblGRCh38hg38GRCh38
GRCh374129,730,855 - 129,796,379 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 364129,950,229 - 130,015,829 (+)NCBINCBI36Build 36hg18NCBI36
Celera4127,112,780 - 127,178,419 (+)NCBICelera
Cytogenetic Map4q28.2NCBI
HuRef4125,461,152 - 125,526,511 (+)NCBIHuRef
CHM1_14129,707,281 - 129,772,873 (+)NCBICHM1_1
T2T-CHM13v2.04132,113,886 - 132,179,423 (+)NCBIT2T-CHM13v2.0
Jade1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82126,471,124 - 126,524,252 (+)NCBIGRCr8
mRatBN7.22124,543,233 - 124,596,361 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2124,543,286 - 124,596,354 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2131,113,743 - 131,166,808 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02129,226,166 - 129,279,231 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02123,855,336 - 123,908,403 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02128,461,147 - 128,514,298 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2128,461,224 - 128,514,291 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02148,061,324 - 148,114,469 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42128,499,983 - 128,553,050 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12128,444,210 - 128,502,196 (+)NCBI
Celera2119,445,989 - 119,498,978 (+)NCBICelera
Cytogenetic Map2q26NCBI
Jade1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542812,765,550 - 12,835,507 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542812,762,629 - 12,835,310 (-)NCBIChiLan1.0ChiLan1.0
JADE1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v23126,569,673 - 126,635,286 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan14126,836,180 - 126,901,814 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v04120,969,668 - 121,035,282 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.14132,271,559 - 132,336,620 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl4132,272,642 - 132,336,620 (+)Ensemblpanpan1.1panPan2
JADE1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11912,187,345 - 12,250,343 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1912,189,281 - 12,250,349 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1912,375,413 - 12,438,357 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01912,274,017 - 12,337,297 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1912,275,915 - 12,337,306 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11912,246,286 - 12,309,249 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01912,535,170 - 12,598,287 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01912,995,766 - 13,058,843 (-)NCBIUU_Cfam_GSD_1.0
Jade1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530160,861,830 - 60,914,355 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366422,157,543 - 2,207,146 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366422,154,662 - 2,207,186 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JADE1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl896,209,079 - 96,270,889 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1896,208,217 - 96,564,132 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.28102,990,692 - 103,053,784 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JADE1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1775,926,199 - 75,993,381 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl775,926,616 - 75,995,327 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603755,088,979 - 55,156,044 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Jade1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247779,666,762 - 9,723,381 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247779,664,111 - 9,726,266 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Jade1
2084 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:3312
Count of miRNA genes:478
Interacting mature miRNAs:574
Transcripts:ENSMUST00000026865, ENSMUST00000163764, ENSMUST00000168086, ENSMUST00000170711
Prediction methods:Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
26884436Zlq3_mzygomatic length QTL 3, 10 week (mouse)33265060142405761Mouse
1558925Hivan1_mHIV-associated nephropathy 1 (mouse)Not determined3758617468716946Mouse
4142399Aec1_mautoimmune exocrinopathy 1 (mouse)Not determined7586174102690034Mouse
4141116Lgaq4_mlate growth adjusted QTL 4 (mouse)Not determined1024922183184946Mouse
4141255W10q3_mweight 10 weeks QTL 3 (mouse)Not determined1024922183184946Mouse
4141563Lgq3_mlate growth QTL 3 (mouse)Not determined1024922183184946Mouse
39128206Lwq18_mliver weight QTL 18 (mouse)31024922183184946Mouse
1357584Splq6_mspleen weight QTL 6 (mouse)Not determined31024922183184946Mouse
1357440Hrtpq1_mheart weight percentage QTL 1 (mouse)Not determined31024922183184946Mouse
1301358Eae20_mexperimental allergic encephalomyelitis 20 (mouse)Not determined31163045345630591Mouse
26884427Cvht4_mcranial vault height 4, 10 week (mouse)316054164109707316Mouse
13207570Tcq12_mtotal cholesterol QTL 12 (mouse)316504164130163649Mouse
4142092Tgq13_mtriglyceride QTL 13 (mouse)Not determined1828816852288168Mouse
1301114Ssial2_msusceptibility to sialadenitis 2 (mouse)Not determined32017486254180103Mouse
26884422Cvht7_mcranial vault height 7, 16 week (mouse)328954149118893649Mouse
1302056Orgwq4_morgan weight QTL 4 (mouse)Not determined330067588147304689Mouse
1300961Bh4p_mbar holding four paws (mouse)Not determined33183785465837997Mouse
12910778Pwgrq13_mpost-weaning growth rate QTL 13 (mouse)33263576058017363Mouse
12910781Pwgrq12_mpost-weaning growth rate QTL 12 (mouse)33263576058017363Mouse
1357689Mdmsc1_mmodifier of muscularity 1 (mouse)Not determined33332720145916479Mouse
10412073Ssen2_msuseptibility to Sendai virus 2 (mouse)Not determined33353546567535615Mouse
9587784Afw13_mabdominal fat weight QTL 13 (mouse)Not determined33375204567752228Mouse
10043882Bwtq13_mbody weight QTL 13 (mouse)Not determined33375204567752228Mouse
15039332Nmrs6_mNAFLD-associated magnetic resonance shift 6 (mouse)33417074168170741Mouse
15039336Nmrs2_mNAFLD-associated magnetic resonance shift 2 (mouse)33457610368576103Mouse
18337272Bmd46_mbone mineral density 46, males (mouse)33540742169407421Mouse
14746977Manh53_mmandible shape 53 (mouse)33592528069925280Mouse
1301705Sles3_msystemic lupus erythmatosus suppressor 3 (mouse)Not determined337174862143353183Mouse
1300587Aod2_mautoimmune ovarian dysgenesis 2 (mouse)Not determined33717974268716946Mouse
11041901Lmr11b_mleishmaniasis resistance 11b (mouse)33970410273704231Mouse
11039513Ltpr3a_mLeishmania tropica response 3a (mouse)33970410273704231Mouse
1301585Cd4ts1_mCD4 T cell subset 1 (mouse)Not determined33970410273704231Mouse
10755516Amzn1_manatomical modifier of Zfp423 1 (mouse)33970410273704231Mouse
13208566Bmiq5_mbody mass index QTL 5 (mouse)340954435115793649Mouse

Markers in Region
AU041499  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38341,615,826 - 41,615,981UniSTSGRCm38
MGSCv37341,419,748 - 41,419,903UniSTSGRCm37
Celera341,338,287 - 41,338,442UniSTS
Cytogenetic Map3BUniSTS
Phf17  
Mouse AssemblyChrPosition (strand)SourceJBrowse
cM Map3 UniSTS
UniSTS:224901  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38341,614,862 - 41,615,060UniSTSGRCm38
MGSCv37341,418,784 - 41,418,982UniSTSGRCm37
Celera341,337,323 - 41,337,521UniSTS
Cytogenetic Map3BUniSTS
AW534015  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38341,614,743 - 41,614,951UniSTSGRCm38
MGSCv37341,418,665 - 41,418,873UniSTSGRCm37
Celera341,337,204 - 41,337,412UniSTS
Cytogenetic Map3BUniSTS
PMC262661P1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38341,590,510 - 41,591,128UniSTSGRCm38
MGSCv37341,394,432 - 41,395,050UniSTSGRCm37
Celera341,312,915 - 41,313,533UniSTS
Cytogenetic Map3BUniSTS
Phf17  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map3BUniSTS
cM Map3 UniSTS
Phf17  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map3BUniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001130184 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001130185 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001130186 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_172303 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006500784 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030252630 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030252631 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC161235 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK021317 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK037302 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK040146 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK049332 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK129445 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK147466 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK166147 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK193039 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK193278 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AV515494 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY357298 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC020316 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC026471 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC038026 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BN000281 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BN000282 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BN000283 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BN000284 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY060282 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY146568 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CD563805 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466530 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CJ060622 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSMUST00000026865   ⟹   ENSMUSP00000026865
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl341,510,166 - 41,571,299 (+)Ensembl
GRCm38.p6 Ensembl341,555,731 - 41,616,864 (+)Ensembl
RefSeq Acc Id: ENSMUST00000163764   ⟹   ENSMUSP00000128152
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl341,517,804 - 41,571,293 (+)Ensembl
GRCm38.p6 Ensembl341,563,369 - 41,616,858 (+)Ensembl
RefSeq Acc Id: ENSMUST00000168086   ⟹   ENSMUSP00000131441
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl341,519,289 - 41,570,547 (+)Ensembl
GRCm38.p6 Ensembl341,564,854 - 41,616,112 (+)Ensembl
RefSeq Acc Id: ENSMUST00000170711   ⟹   ENSMUSP00000127113
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl341,518,042 - 41,568,493 (+)Ensembl
GRCm38.p6 Ensembl341,563,607 - 41,614,058 (+)Ensembl
RefSeq Acc Id: ENSMUST00000191921
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl341,548,208 - 41,558,999 (+)Ensembl
GRCm38.p6 Ensembl341,593,773 - 41,604,564 (+)Ensembl
RefSeq Acc Id: ENSMUST00000191952   ⟹   ENSMUSP00000141499
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl341,519,355 - 41,561,130 (+)Ensembl
GRCm38.p6 Ensembl341,564,920 - 41,606,695 (+)Ensembl
RefSeq Acc Id: ENSMUST00000192300
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl341,556,865 - 41,559,242 (+)Ensembl
GRCm38.p6 Ensembl341,602,430 - 41,604,807 (+)Ensembl
RefSeq Acc Id: ENSMUST00000192451   ⟹   ENSMUSP00000142142
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl341,551,102 - 41,559,235 (+)Ensembl
GRCm38.p6 Ensembl341,596,667 - 41,604,800 (+)Ensembl
RefSeq Acc Id: ENSMUST00000193080
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl341,517,846 - 41,546,169 (+)Ensembl
GRCm38.p6 Ensembl341,563,411 - 41,591,734 (+)Ensembl
RefSeq Acc Id: ENSMUST00000194181   ⟹   ENSMUSP00000141670
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl341,510,176 - 41,548,216 (+)Ensembl
GRCm38.p6 Ensembl341,555,741 - 41,593,781 (+)Ensembl
RefSeq Acc Id: ENSMUST00000194348
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl341,519,333 - 41,546,167 (+)Ensembl
GRCm38.p6 Ensembl341,564,898 - 41,591,732 (+)Ensembl
RefSeq Acc Id: ENSMUST00000195200
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl341,535,291 - 41,543,438 (+)Ensembl
GRCm38.p6 Ensembl341,580,856 - 41,589,003 (+)Ensembl
RefSeq Acc Id: ENSMUST00000195322
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl341,546,108 - 41,554,606 (+)Ensembl
GRCm38.p6 Ensembl341,591,673 - 41,600,171 (+)Ensembl
RefSeq Acc Id: ENSMUST00000195846   ⟹   ENSMUSP00000141711
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl341,510,195 - 41,551,055 (+)Ensembl
GRCm38.p6 Ensembl341,555,760 - 41,596,620 (+)Ensembl
RefSeq Acc Id: NM_001130184   ⟹   NP_001123656
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39341,510,169 - 41,571,299 (+)NCBI
GRCm38341,555,734 - 41,616,864 (+)ENTREZGENE
MGSCv37341,359,656 - 41,420,786 (+)RGD
Celera341,278,427 - 41,339,323 (+)RGD
cM Map3 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001130185   ⟹   NP_001123657
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39341,518,186 - 41,571,299 (+)NCBI
GRCm38341,563,751 - 41,616,864 (+)NCBI
MGSCv37341,359,656 - 41,420,786 (+)RGD
Celera341,278,427 - 41,339,323 (+)RGD
cM Map3 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001130186   ⟹   NP_001123658
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39341,519,315 - 41,571,299 (+)NCBI
GRCm38341,564,880 - 41,616,864 (+)NCBI
MGSCv37341,359,656 - 41,420,786 (+)RGD
Celera341,278,427 - 41,339,323 (+)RGD
cM Map3 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_172303   ⟹   NP_758507
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39341,517,818 - 41,571,299 (+)NCBI
GRCm38341,563,383 - 41,616,864 (+)NCBI
MGSCv37341,359,656 - 41,420,786 (+)RGD
Celera341,278,427 - 41,339,323 (+)RGD
cM Map3 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006500784   ⟹   XP_006500847
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39341,519,310 - 41,571,293 (+)NCBI
GRCm38341,564,875 - 41,616,858 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030252630   ⟹   XP_030108490
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39341,519,051 - 41,571,293 (+)NCBI
GRCm38341,564,616 - 41,616,858 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030252631   ⟹   XP_030108491
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39341,519,298 - 41,571,293 (+)NCBI
GRCm38341,564,884 - 41,616,858 (+)NCBI
Sequence:
RefSeq Acc Id: NP_758507   ⟸   NM_172303
- UniProtKB: Q8CFM2 (UniProtKB/Swiss-Prot),   Q8C7S6 (UniProtKB/Swiss-Prot),   Q6IE84 (UniProtKB/Swiss-Prot),   Q8R362 (UniProtKB/Swiss-Prot),   Q6ZPI0 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001123656   ⟸   NM_001130184
- UniProtKB: Q8CFM2 (UniProtKB/Swiss-Prot),   Q8C7S6 (UniProtKB/Swiss-Prot),   Q6IE84 (UniProtKB/Swiss-Prot),   Q8R362 (UniProtKB/Swiss-Prot),   Q6ZPI0 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001123657   ⟸   NM_001130185
- UniProtKB: Q8CFM2 (UniProtKB/Swiss-Prot),   Q8C7S6 (UniProtKB/Swiss-Prot),   Q6IE84 (UniProtKB/Swiss-Prot),   Q8R362 (UniProtKB/Swiss-Prot),   Q6ZPI0 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001123658   ⟸   NM_001130186
- UniProtKB: Q8CFM2 (UniProtKB/Swiss-Prot),   Q8C7S6 (UniProtKB/Swiss-Prot),   Q6IE84 (UniProtKB/Swiss-Prot),   Q8R362 (UniProtKB/Swiss-Prot),   Q6ZPI0 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006500847   ⟸   XM_006500784
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_030108490   ⟸   XM_030252630
- Peptide Label: isoform X1
- UniProtKB: Q8CFM2 (UniProtKB/Swiss-Prot),   Q8C7S6 (UniProtKB/Swiss-Prot),   Q6ZPI0 (UniProtKB/Swiss-Prot),   Q6IE84 (UniProtKB/Swiss-Prot),   Q8R362 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_030108491   ⟸   XM_030252631
- Peptide Label: isoform X1
- UniProtKB: Q8CFM2 (UniProtKB/Swiss-Prot),   Q8C7S6 (UniProtKB/Swiss-Prot),   Q6ZPI0 (UniProtKB/Swiss-Prot),   Q6IE84 (UniProtKB/Swiss-Prot),   Q8R362 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: ENSMUSP00000128152   ⟸   ENSMUST00000163764
RefSeq Acc Id: ENSMUSP00000026865   ⟸   ENSMUST00000026865
RefSeq Acc Id: ENSMUSP00000141499   ⟸   ENSMUST00000191952
RefSeq Acc Id: ENSMUSP00000127113   ⟸   ENSMUST00000170711
RefSeq Acc Id: ENSMUSP00000141670   ⟸   ENSMUST00000194181
RefSeq Acc Id: ENSMUSP00000131441   ⟸   ENSMUST00000168086
RefSeq Acc Id: ENSMUSP00000142142   ⟸   ENSMUST00000192451
RefSeq Acc Id: ENSMUSP00000141711   ⟸   ENSMUST00000195846
Protein Domains
PHD-type

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q6ZPI0-F1-model_v2 AlphaFold Q6ZPI0 1-834 view protein structure

Promoters
RGD ID:6834229
Promoter ID:MM_KWN:34213
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day2,   ES_Cell,   Kidney,   Liver,   MEF_B6
Transcripts:UC008PCM.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36341,384,161 - 41,385,612 (+)MPROMDB
RGD ID:6880570
Promoter ID:EPDNEW_M3736
Type:multiple initiation site
Name:Jade1_2
Description:Mus musculus jade family PHD finger 1 , transcript variant 4,mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M3737  EPDNEW_M3738  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38341,555,732 - 41,555,792EPDNEW
RGD ID:6880572
Promoter ID:EPDNEW_M3737
Type:single initiation site
Name:Jade1_3
Description:Mus musculus jade family PHD finger 1 , transcript variant 4,mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M3736  EPDNEW_M3738  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38341,560,690 - 41,560,750EPDNEW
RGD ID:6880574
Promoter ID:EPDNEW_M3738
Type:initiation region
Name:Jade1_1
Description:Mus musculus jade family PHD finger 1 , transcript variant 4,mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M3736  EPDNEW_M3737  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38341,563,408 - 41,563,468EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1925835 AgrOrtholog
Ensembl Genes ENSMUSG00000025764 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000026865 ENTREZGENE
  ENSMUST00000026865.15 UniProtKB/Swiss-Prot
  ENSMUST00000163764 ENTREZGENE
  ENSMUST00000163764.8 UniProtKB/Swiss-Prot
  ENSMUST00000168086 ENTREZGENE
  ENSMUST00000168086.7 UniProtKB/Swiss-Prot
  ENSMUST00000170711 ENTREZGENE
  ENSMUST00000170711.8 UniProtKB/Swiss-Prot
  ENSMUST00000191952.2 UniProtKB/Swiss-Prot
  ENSMUST00000192451.2 UniProtKB/TrEMBL
  ENSMUST00000194181.6 UniProtKB/TrEMBL
  ENSMUST00000195846.6 UniProtKB/TrEMBL
Gene3D-CATH 3.30.40.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Enhancer_polycomb-like_N UniProtKB/Swiss-Prot
  EPHD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Jade-1_PHD UniProtKB/Swiss-Prot
  Zinc_finger_PHD-type_CS UniProtKB/Swiss-Prot
  Znf_FYVE_PHD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_PHD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_PHD-finger UniProtKB/Swiss-Prot
  Znf_RING/FYVE/PHD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:269424 UniProtKB/Swiss-Prot
MGD MGI:1925835 ENTREZGENE
NCBI Gene 269424 ENTREZGENE
PANTHER PHD FINGER PROTEINS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PROTEIN JADE-1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam EPL1 UniProtKB/Swiss-Prot
  PHD_2 UniProtKB/Swiss-Prot
  zf-HC5HC2H UniProtKB/TrEMBL
  zf-HC5HC2H_2 UniProtKB/Swiss-Prot
PhenoGen Jade1 PhenoGen
PROSITE EPHD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZF_PHD_1 UniProtKB/Swiss-Prot
  ZF_PHD_2 UniProtKB/Swiss-Prot
SMART PHD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF57903 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0A6YWS2_MOUSE UniProtKB/TrEMBL
  A0A0A6YWV0_MOUSE UniProtKB/TrEMBL
  A0A0A6YXU2_MOUSE UniProtKB/TrEMBL
  JADE1_MOUSE UniProtKB/Swiss-Prot
  Q6IE84 ENTREZGENE
  Q6UZ80_MOUSE UniProtKB/TrEMBL
  Q6ZPI0 ENTREZGENE
  Q8C7S6 ENTREZGENE
  Q8CFM2 ENTREZGENE
  Q8R362 ENTREZGENE
UniProt Secondary Q6IE84 UniProtKB/Swiss-Prot
  Q8C7S6 UniProtKB/Swiss-Prot
  Q8CFM2 UniProtKB/Swiss-Prot
  Q8R362 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-11-19 Jade1  jade family PHD finger 1  Phf17  PHD finger protein 17  Symbol and/or name change 5135510 APPROVED